Wall clock time and date at job start Tue Mar 31 2020 14:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47086 * 118.71170 * 3 2 1 5 5 C 1.36940 * 120.00005 * 263.94367 * 4 3 2 6 6 H 1.08001 * 120.00180 * 201.07064 * 5 4 3 7 7 C 1.38813 * 119.99466 * 21.07619 * 5 4 3 8 8 N 1.31613 * 120.00287 * 15.30250 * 7 5 4 9 9 Si 1.86797 * 119.99582 * 195.30055 * 7 5 4 10 10 H 1.48500 * 109.47281 * 60.00307 * 9 7 5 11 11 H 1.48508 * 109.47343 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47549 * 300.00071 * 9 7 5 13 13 C 1.46503 * 120.00120 * 83.95339 * 4 3 2 14 14 C 1.50698 * 109.46824 * 269.99675 * 13 4 3 15 15 O 1.21296 * 120.00001 * 359.97438 * 14 13 4 16 16 N 1.34776 * 119.99974 * 180.02562 * 14 13 4 17 17 C 1.40113 * 120.00161 * 184.47185 * 16 14 13 18 18 C 1.38848 * 120.01213 * 325.96905 * 17 16 14 19 19 C 1.38089 * 119.98301 * 180.02562 * 18 17 16 20 20 C 1.38721 * 120.01332 * 0.02562 * 19 18 17 21 21 O 1.35966 * 119.98254 * 179.97438 * 20 19 18 22 22 C 1.42900 * 117.00103 * 179.97438 * 21 20 19 23 23 F 1.39892 * 109.47674 * 300.00190 * 22 21 20 24 24 F 1.39905 * 109.46782 * 60.00416 * 22 21 20 25 25 C 1.38719 * 120.03369 * 0.23308 * 20 19 18 26 26 C 1.38095 * 120.01297 * 359.49478 * 25 20 19 27 27 H 4.40636 * 5.51589 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.47161 * 358.70606 * 3 2 1 29 29 H 1.09006 * 109.47041 * 238.71067 * 3 2 1 30 30 H 0.97005 * 120.00128 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47046 * 149.99714 * 13 4 3 32 32 H 1.08994 * 109.47380 * 29.99798 * 13 4 3 33 33 H 0.96999 * 119.99829 * 4.47106 * 16 14 13 34 34 H 1.07993 * 120.00793 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.99171 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47193 * 179.97438 * 22 21 20 37 37 H 1.07999 * 119.99587 * 179.72076 * 25 20 19 38 38 H 1.07995 * 120.00697 * 180.22934 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6644 -1.2113 5 6 3.4805 -0.0797 -2.3075 6 1 4.1406 0.3350 -3.0549 7 6 2.9831 -1.3669 -2.4579 8 7 1.9614 -1.7668 -1.7310 9 14 3.7641 -2.5315 -3.6921 10 1 5.1927 -2.7374 -3.3430 11 1 3.0535 -3.8352 -3.6608 12 1 3.6664 -1.9478 -5.0540 13 6 3.2515 2.1242 -1.2500 14 6 1.9597 2.7190 -1.7483 15 8 1.0322 1.9948 -2.0427 16 7 1.8352 4.0557 -1.8679 17 6 0.6055 4.6142 -2.2411 18 6 -0.2248 3.9379 -3.1248 19 6 -1.4363 4.4891 -3.4926 20 6 -1.8235 5.7185 -2.9798 21 8 -3.0163 6.2610 -3.3427 22 6 -3.3516 7.5292 -2.7759 23 9 -3.3971 7.4197 -1.3820 24 9 -2.3839 8.4724 -3.1383 25 6 -0.9920 6.3972 -2.1010 26 6 0.2173 5.8445 -1.7279 27 1 -1.0502 -0.0002 0.0000 28 1 3.0098 -1.0266 0.0232 29 1 3.0091 0.5346 0.8782 30 1 1.6141 -2.6664 -1.8359 31 1 4.0636 2.4057 -1.9205 32 1 3.4612 2.4985 -0.2481 33 1 2.5968 4.6310 -1.6956 34 1 0.0771 2.9814 -3.5251 35 1 -2.0821 3.9634 -4.1804 36 1 -4.3256 7.8473 -3.1478 37 1 -1.2921 7.3564 -1.7056 38 1 0.8628 6.3713 -1.0409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281529302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:40 Heat of formation + Delta-G solvation = -73.482826 kcal Electronic energy + Delta-G solvation = -26921.704737 eV Core-core repulsion = 22595.651417 eV Total energy + Delta-G solvation = -4326.053320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.28591 -48.28251 -41.46845 -40.34104 -38.46803 -37.31544 -35.21785 -33.41211 -33.04748 -32.09563 -30.53579 -28.59161 -27.81139 -26.81848 -24.31736 -24.11986 -22.91600 -21.27136 -20.02785 -19.35682 -19.08223 -18.85636 -18.71739 -18.25850 -17.48685 -17.07130 -16.83388 -16.27898 -15.64637 -15.59975 -15.57211 -15.08470 -14.98371 -14.95651 -14.87224 -14.61747 -14.52400 -14.15094 -14.02635 -13.92952 -13.36263 -13.14669 -13.12889 -12.89343 -12.66751 -12.45126 -12.25691 -12.10932 -11.96924 -11.02216 -10.87245 -10.67462 -10.47642 -10.18912 -10.04934 -8.90179 -8.79957 -7.77283 -5.27285 0.22154 0.26189 1.49556 1.50005 1.56844 1.65353 1.94576 2.25429 2.45455 2.57356 2.59795 2.71600 2.72563 3.37909 3.52521 3.72759 3.79371 3.80070 3.83862 4.07251 4.19229 4.26989 4.37133 4.54533 4.66311 4.77040 4.80088 4.92809 4.97438 5.12680 5.34184 5.35578 5.45814 5.65726 5.73218 5.75242 6.10373 6.29408 6.71541 7.11623 7.52460 7.54459 7.83839 8.23115 9.22018 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.002878 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.355122 B = 9726.652162 C = 9798.902679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.105 4.105 3 C 0.270 3.730 4 N -0.572 5.572 5 C -0.270 4.270 6 H 0.080 0.920 7 C -0.044 4.044 8 N -0.909 5.909 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.303 1.303 12 H -0.286 1.286 13 C 0.126 3.874 14 C 0.462 3.538 15 O -0.529 6.529 16 N -0.670 5.670 17 C 0.124 3.876 18 C -0.111 4.111 19 C -0.127 4.127 20 C 0.074 3.926 21 O -0.330 6.330 22 C 0.405 3.595 23 F -0.211 7.211 24 F -0.208 7.208 25 C -0.172 4.172 26 C -0.108 4.108 27 H 0.198 0.802 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.243 0.757 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.424 0.576 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.235 0.765 37 H 0.149 0.851 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 21.953 0.800 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.107 4.107 3 C 0.145 3.855 4 N -0.289 5.289 5 C -0.400 4.400 6 H 0.098 0.902 7 C -0.241 4.241 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.229 1.229 12 H -0.212 1.212 13 C -0.005 4.005 14 C 0.248 3.752 15 O -0.402 6.402 16 N -0.320 5.320 17 C 0.029 3.971 18 C -0.132 4.132 19 C -0.146 4.146 20 C 0.030 3.970 21 O -0.248 6.248 22 C 0.316 3.684 23 F -0.193 7.193 24 F -0.190 7.190 25 C -0.191 4.191 26 C -0.128 4.128 27 H 0.215 0.785 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.263 0.737 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.251 0.749 37 H 0.166 0.834 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.488 21.102 0.526 21.810 hybrid contribution -0.092 -0.729 -0.732 1.037 sum -5.580 20.373 -0.206 21.125 Atomic orbital electron populations 1.24533 0.96085 1.06365 1.06025 1.24462 0.95876 0.95213 0.95195 1.17912 0.82315 0.97966 0.87319 1.44213 1.72761 1.00125 1.11804 1.19466 1.22120 0.96013 1.02392 0.90194 1.25747 0.96687 1.00994 1.00644 1.70268 1.23862 1.17394 1.43773 0.85403 0.78324 0.77924 0.78976 1.19430 1.22936 1.21247 1.21402 0.92328 0.84040 1.02693 1.23828 0.93159 0.81130 0.77091 1.90756 1.41914 1.60518 1.47034 1.43918 1.11216 1.07821 1.69045 1.18032 0.88936 0.94402 0.95777 1.21109 0.94814 1.00181 0.97085 1.20397 0.97213 0.94122 1.02854 1.18824 0.85884 0.94179 0.98084 1.86604 1.35422 1.35430 1.67383 1.24267 0.93639 0.75695 0.74775 1.93075 1.96965 1.95471 1.33746 1.93072 1.68596 1.66116 1.91210 1.21478 0.95672 1.01688 1.00284 1.20979 0.96833 0.94884 1.00123 0.78485 0.90839 0.90973 0.94771 0.87634 0.87056 0.73691 0.86564 0.84537 0.74944 0.83372 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.94 18.77 74.32 1.39 -14.55 16 2 C -0.10 -5.41 9.89 31.12 0.31 -5.10 16 3 C 0.27 12.71 5.44 84.57 0.46 13.17 16 4 N -0.57 -26.66 2.09 -716.92 -1.50 -28.15 16 5 C -0.27 -14.15 9.67 84.03 0.81 -13.34 16 6 H 0.08 4.00 7.86 -2.91 -0.02 3.97 16 7 C -0.04 -2.42 4.99 84.86 0.42 -2.00 16 8 N -0.91 -53.80 9.25 21.65 0.20 -53.60 16 9 Si 0.96 45.02 29.58 68.60 2.03 47.05 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.13 4.39 6.18 85.63 0.53 4.91 16 14 C 0.46 17.71 7.65 87.66 0.67 18.38 16 15 O -0.53 -26.58 11.79 -3.08 -0.04 -26.61 16 16 N -0.67 -19.09 5.35 -303.39 -1.62 -20.71 16 17 C 0.12 3.80 6.32 38.11 0.24 4.05 16 18 C -0.11 -3.98 8.70 22.38 0.19 -3.78 16 19 C -0.13 -3.96 9.98 22.35 0.22 -3.74 16 20 C 0.07 2.01 6.48 22.50 0.15 2.16 16 21 O -0.33 -7.26 10.43 -93.17 -0.97 -8.23 16 22 C 0.41 5.61 5.98 113.37 0.68 6.29 16 23 F -0.21 -3.77 15.60 44.97 0.70 -3.07 16 24 F -0.21 -3.44 15.56 44.97 0.70 -2.74 16 25 C -0.17 -4.23 8.25 22.35 0.18 -4.05 16 26 C -0.11 -2.63 9.96 22.38 0.22 -2.40 16 27 H 0.20 9.03 7.80 -4.41 -0.03 9.00 16 28 H 0.07 3.83 6.50 -2.39 -0.02 3.81 16 29 H 0.07 2.77 7.98 -2.38 -0.02 2.75 16 30 H 0.24 14.39 8.31 -92.70 -0.77 13.62 16 31 H 0.11 3.14 8.03 -2.38 -0.02 3.12 16 32 H 0.11 3.00 7.95 -2.39 -0.02 2.98 16 33 H 0.42 8.00 8.82 -92.71 -0.82 7.19 16 34 H 0.12 5.02 6.14 -2.91 -0.02 5.00 16 35 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.23 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.15 3.10 5.09 -2.91 -0.01 3.09 16 38 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -78.20 337.97 6.29 -71.90 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.30 Total: 24.17 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 6.49 Total: 0.00 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -2.92 Total: -102.47 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.01 Total: -34.84 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 1.40 Total: -5.81 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.20 6.29 -71.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281529302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.580 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds