Wall clock time and date at job start Tue Mar 31 2020 14:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47462 * 21.91840 * 3 2 1 5 5 C 1.36943 * 119.99653 * 263.77598 * 4 3 2 6 6 H 1.07997 * 119.99909 * 201.79556 * 5 4 3 7 7 C 1.38812 * 119.99984 * 21.79313 * 5 4 3 8 8 N 1.31616 * 120.00004 * 11.26433 * 7 5 4 9 9 Si 1.86800 * 119.99829 * 191.26213 * 7 5 4 10 10 H 1.48503 * 109.47247 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47172 * 120.00087 * 9 7 5 12 12 H 1.48495 * 109.47315 * 240.00012 * 9 7 5 13 13 C 1.46492 * 120.00284 * 83.77281 * 4 3 2 14 14 C 1.50696 * 109.47439 * 90.00384 * 13 4 3 15 15 O 1.21295 * 119.99922 * 359.97438 * 14 13 4 16 16 N 1.34780 * 120.00538 * 180.02562 * 14 13 4 17 17 C 1.40118 * 120.00070 * 185.15700 * 16 14 13 18 18 C 1.38719 * 120.09200 * 18.96762 * 17 16 14 19 19 C 1.38195 * 119.98583 * 180.02562 * 18 17 16 20 20 C 1.38276 * 120.16470 * 359.97438 * 19 18 17 21 21 C 1.38244 * 120.18023 * 0.02562 * 20 19 18 22 22 C 1.38548 * 120.01135 * 0.02562 * 21 20 19 23 23 O 1.35971 * 120.08312 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99928 * 359.95179 * 23 22 21 25 25 F 1.39895 * 109.47243 * 300.00141 * 24 23 22 26 26 F 1.39904 * 109.46731 * 60.00210 * 24 23 22 27 27 H 4.40634 * 5.51462 * 180.02562 * 4 1 2 28 28 H 1.08993 * 109.47191 * 261.91079 * 3 2 1 29 29 H 1.09007 * 109.46951 * 141.91596 * 3 2 1 30 30 H 0.97003 * 120.00184 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47658 * 329.99980 * 13 4 3 32 32 H 1.09002 * 109.47406 * 210.00381 * 13 4 3 33 33 H 0.96998 * 119.99873 * 5.15500 * 16 14 13 34 34 H 1.08008 * 120.01001 * 359.97438 * 18 17 16 35 35 H 1.08006 * 119.91975 * 179.97438 * 19 18 17 36 36 H 1.08007 * 119.90995 * 179.74185 * 20 19 18 37 37 H 1.07996 * 119.99515 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47442 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2805 -0.5156 5 6 3.4848 -2.2795 0.3533 6 1 4.1548 -3.0636 0.0329 7 6 2.9784 -2.2842 1.6457 8 7 1.9990 -1.4677 1.9717 9 14 3.6870 -3.4495 2.9222 10 1 4.7716 -4.2566 2.3077 11 1 4.2365 -2.6654 4.0574 12 1 2.6167 -4.3525 3.4164 13 6 3.2495 -1.4929 -1.9605 14 6 4.6201 -1.0709 -2.4232 15 8 5.4223 -0.6350 -1.6246 16 7 4.9544 -1.1768 -3.7246 17 6 6.2616 -0.8872 -4.1380 18 6 7.2970 -0.8778 -3.2149 19 6 8.5853 -0.5914 -3.6249 20 6 8.8459 -0.3143 -4.9543 21 6 7.8192 -0.3217 -5.8800 22 6 6.5247 -0.6069 -5.4768 23 8 5.5138 -0.6151 -6.3862 24 6 5.8578 -0.3196 -7.7413 25 9 6.4166 0.9610 -7.8120 26 9 6.7859 -1.2595 -8.2024 27 1 -1.0498 -0.0003 -0.0003 28 1 3.0092 0.1454 1.0174 29 1 3.0089 0.8098 -0.6339 30 1 1.6453 -1.4707 2.8750 31 1 2.4936 -0.9004 -2.4760 32 1 3.0992 -2.5488 -2.1856 33 1 4.2902 -1.4535 -4.3750 34 1 7.0963 -1.0935 -2.1758 35 1 9.3906 -0.5840 -2.9052 36 1 9.8536 -0.0869 -5.2695 37 1 8.0262 -0.1052 -6.9176 38 1 4.9619 -0.3602 -8.3608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281546488.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:43 Heat of formation + Delta-G solvation = -51.425428 kcal Electronic energy + Delta-G solvation = -26940.566549 eV Core-core repulsion = 22615.469710 eV Total energy + Delta-G solvation = -4325.096840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.61179 -47.60257 -40.59910 -39.01388 -37.30810 -35.80470 -34.35461 -31.56644 -31.43600 -30.34203 -29.67550 -27.12118 -26.29073 -25.92893 -23.31826 -22.49011 -21.69350 -19.94873 -19.21675 -18.53356 -18.17366 -17.51520 -17.22084 -16.74318 -16.35592 -15.79842 -15.24954 -15.09761 -14.77423 -14.62930 -14.40420 -14.15293 -13.92209 -13.81689 -13.56648 -13.44304 -13.26994 -13.02966 -12.74162 -12.47550 -12.12331 -11.73046 -11.46333 -11.37924 -11.35292 -10.97995 -10.76935 -10.35139 -10.24104 -10.06490 -9.32679 -8.95650 -8.85464 -8.62949 -8.39464 -7.76971 -7.04080 -5.80505 -3.30700 1.29436 1.35389 2.31844 3.13619 3.18584 3.29219 3.38568 3.44380 3.46785 3.83071 4.02242 4.14813 4.37047 4.37753 4.51342 4.77476 4.85052 5.06548 5.29656 5.38920 5.45747 5.50097 5.64457 5.82587 5.88460 5.99382 6.04965 6.18145 6.25627 6.49061 6.64250 6.67058 6.73311 7.17643 7.30059 7.43710 7.69264 7.74697 8.23293 8.66484 9.06096 9.17265 9.68046 10.12633 11.22290 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.003156 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.562137 B = 8870.236153 C = 9800.527468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.090 4.090 3 C 0.270 3.730 4 N -0.561 5.561 5 C -0.260 4.260 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.894 5.894 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.290 1.290 13 C 0.134 3.866 14 C 0.477 3.523 15 O -0.498 6.498 16 N -0.676 5.676 17 C 0.158 3.842 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.169 4.169 22 C 0.055 3.945 23 O -0.323 6.323 24 C 0.414 3.586 25 F -0.200 7.200 26 F -0.201 7.201 27 H 0.190 0.810 28 H 0.105 0.895 29 H 0.033 0.967 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.410 0.590 34 H 0.169 0.831 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 2.335 -19.616 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.093 4.093 3 C 0.145 3.855 4 N -0.278 5.278 5 C -0.389 4.389 6 H 0.091 0.909 7 C -0.192 4.192 8 N -0.538 5.538 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.217 1.217 13 C 0.001 3.999 14 C 0.264 3.736 15 O -0.371 6.371 16 N -0.321 5.321 17 C 0.061 3.939 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.188 4.188 22 C 0.010 3.990 23 O -0.241 6.241 24 C 0.324 3.676 25 F -0.181 7.181 26 F -0.182 7.182 27 H 0.208 0.792 28 H 0.122 0.878 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.245 0.755 34 H 0.186 0.814 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.548 2.590 -18.701 20.332 hybrid contribution 0.059 -0.691 0.108 0.702 sum 7.607 1.899 -18.593 20.178 Atomic orbital electron populations 1.24162 0.95306 1.05416 1.07488 1.24211 0.95172 0.95515 0.94385 1.17782 0.82560 0.85122 1.00037 1.43587 1.73337 1.12467 0.98367 1.19197 1.22492 1.04272 0.92911 0.90930 1.25004 0.96566 0.98963 0.98668 1.70022 1.25210 1.39529 1.19007 0.86107 0.78287 0.80094 0.81536 1.20278 1.21454 1.21725 1.20689 0.90159 1.01120 0.87921 1.23741 0.93285 0.76674 0.79930 1.90530 1.51424 1.41975 1.53141 1.44044 1.09414 1.67887 1.10763 1.17354 0.86470 1.00841 0.89207 1.21826 0.90497 0.99538 1.01813 1.21132 0.96689 1.00067 0.95700 1.20860 0.98552 1.01324 0.93020 1.21232 0.91450 1.05196 1.00913 1.18476 0.87384 1.05164 0.88023 1.86522 1.34971 1.86066 1.16544 1.23300 0.88936 0.72009 0.83388 1.93096 1.87833 1.41228 1.95991 1.93094 1.70370 1.66028 1.88749 0.79231 0.87773 0.94886 0.93404 0.90810 0.89561 0.75483 0.81362 0.85467 0.85810 0.85135 0.80365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.80 19.25 29.55 0.57 -6.23 16 2 C -0.09 -2.17 11.50 -37.12 -0.43 -2.59 16 3 C 0.27 6.51 5.40 -6.83 -0.04 6.47 16 4 N -0.56 -13.50 1.98 -177.96 -0.35 -13.86 16 5 C -0.26 -6.91 9.68 -15.06 -0.15 -7.05 16 6 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 7 C 0.01 0.18 5.09 -17.43 -0.09 0.09 16 8 N -0.89 -25.06 9.08 55.49 0.50 -24.56 16 9 Si 0.91 21.65 29.57 -169.99 -5.03 16.62 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.13 2.53 6.16 -5.20 -0.03 2.50 16 14 C 0.48 8.77 7.76 -10.99 -0.09 8.68 16 15 O -0.50 -10.93 13.29 5.54 0.07 -10.85 16 16 N -0.68 -10.05 5.33 -9.75 -0.05 -10.10 16 17 C 0.16 2.43 6.53 -83.50 -0.55 1.88 16 18 C -0.12 -1.85 8.80 -39.42 -0.35 -2.20 16 19 C -0.12 -1.54 10.04 -39.58 -0.40 -1.94 16 20 C -0.12 -1.41 10.04 -39.57 -0.40 -1.81 16 21 C -0.17 -2.11 8.26 -39.47 -0.33 -2.43 16 22 C 0.05 0.74 6.50 -39.07 -0.25 0.48 16 23 O -0.32 -3.54 9.78 -19.65 -0.19 -3.73 16 24 C 0.41 3.21 5.98 101.05 0.60 3.81 16 25 F -0.20 -1.90 15.59 2.25 0.04 -1.86 16 26 F -0.20 -1.83 15.58 2.25 0.04 -1.80 16 27 H 0.19 3.52 7.80 -54.10 -0.42 3.10 16 28 H 0.10 2.79 6.41 -51.93 -0.33 2.46 16 29 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.24 8.07 -51.93 -0.42 0.83 16 32 H 0.09 1.52 8.04 -51.93 -0.42 1.10 16 33 H 0.41 4.87 8.24 -40.82 -0.34 4.53 16 34 H 0.17 3.08 5.36 -52.48 -0.28 2.80 16 35 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.13 1.46 5.10 -52.49 -0.27 1.19 16 38 H 0.18 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -32.77 340.04 -5.47 -38.24 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.71 Total: 7.11 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.91 Total: -0.34 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.10 Total: -48.51 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.12 Total: -14.59 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.77 -5.47 -38.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281546488.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.186 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds