Wall clock time and date at job start Tue Mar 31 2020 14:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47462 * 21.91840 * 3 2 1 5 5 C 1.36943 * 119.99653 * 263.77598 * 4 3 2 6 6 H 1.07997 * 119.99909 * 201.79556 * 5 4 3 7 7 C 1.38812 * 119.99984 * 21.79313 * 5 4 3 8 8 N 1.31616 * 120.00004 * 11.26433 * 7 5 4 9 9 Si 1.86800 * 119.99829 * 191.26213 * 7 5 4 10 10 H 1.48503 * 109.47247 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47172 * 120.00087 * 9 7 5 12 12 H 1.48495 * 109.47315 * 240.00012 * 9 7 5 13 13 C 1.46492 * 120.00284 * 83.77281 * 4 3 2 14 14 C 1.50696 * 109.47439 * 90.00384 * 13 4 3 15 15 O 1.21295 * 119.99922 * 359.97438 * 14 13 4 16 16 N 1.34780 * 120.00538 * 180.02562 * 14 13 4 17 17 C 1.40118 * 120.00070 * 185.15700 * 16 14 13 18 18 C 1.38719 * 120.09200 * 18.96762 * 17 16 14 19 19 C 1.38195 * 119.98583 * 180.02562 * 18 17 16 20 20 C 1.38276 * 120.16470 * 359.97438 * 19 18 17 21 21 C 1.38244 * 120.18023 * 0.02562 * 20 19 18 22 22 C 1.38548 * 120.01135 * 0.02562 * 21 20 19 23 23 O 1.35971 * 120.08312 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99928 * 359.95179 * 23 22 21 25 25 F 1.39895 * 109.47243 * 300.00141 * 24 23 22 26 26 F 1.39904 * 109.46731 * 60.00210 * 24 23 22 27 27 H 4.40634 * 5.51462 * 180.02562 * 4 1 2 28 28 H 1.08993 * 109.47191 * 261.91079 * 3 2 1 29 29 H 1.09007 * 109.46951 * 141.91596 * 3 2 1 30 30 H 0.97003 * 120.00184 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47658 * 329.99980 * 13 4 3 32 32 H 1.09002 * 109.47406 * 210.00381 * 13 4 3 33 33 H 0.96998 * 119.99873 * 5.15500 * 16 14 13 34 34 H 1.08008 * 120.01001 * 359.97438 * 18 17 16 35 35 H 1.08006 * 119.91975 * 179.97438 * 19 18 17 36 36 H 1.08007 * 119.90995 * 179.74185 * 20 19 18 37 37 H 1.07996 * 119.99515 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47442 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2805 -0.5156 5 6 3.4848 -2.2795 0.3533 6 1 4.1548 -3.0636 0.0329 7 6 2.9784 -2.2842 1.6457 8 7 1.9990 -1.4677 1.9717 9 14 3.6870 -3.4495 2.9222 10 1 4.7716 -4.2566 2.3077 11 1 4.2365 -2.6654 4.0574 12 1 2.6167 -4.3525 3.4164 13 6 3.2495 -1.4929 -1.9605 14 6 4.6201 -1.0709 -2.4232 15 8 5.4223 -0.6350 -1.6246 16 7 4.9544 -1.1768 -3.7246 17 6 6.2616 -0.8872 -4.1380 18 6 7.2970 -0.8778 -3.2149 19 6 8.5853 -0.5914 -3.6249 20 6 8.8459 -0.3143 -4.9543 21 6 7.8192 -0.3217 -5.8800 22 6 6.5247 -0.6069 -5.4768 23 8 5.5138 -0.6151 -6.3862 24 6 5.8578 -0.3196 -7.7413 25 9 6.4166 0.9610 -7.8120 26 9 6.7859 -1.2595 -8.2024 27 1 -1.0498 -0.0003 -0.0003 28 1 3.0092 0.1454 1.0174 29 1 3.0089 0.8098 -0.6339 30 1 1.6453 -1.4707 2.8750 31 1 2.4936 -0.9004 -2.4760 32 1 3.0992 -2.5488 -2.1856 33 1 4.2902 -1.4535 -4.3750 34 1 7.0963 -1.0935 -2.1758 35 1 9.3906 -0.5840 -2.9052 36 1 9.8536 -0.0869 -5.2695 37 1 8.0262 -0.1052 -6.9176 38 1 4.9619 -0.3602 -8.3608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281546488.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:43 Heat of formation + Delta-G solvation = -71.592416 kcal Electronic energy + Delta-G solvation = -26941.441055 eV Core-core repulsion = 22615.469710 eV Total energy + Delta-G solvation = -4325.971346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.27281 -48.27019 -41.75287 -40.23211 -38.35022 -37.53915 -35.68190 -33.50152 -33.17799 -31.40178 -30.89487 -28.66963 -27.87012 -27.00836 -24.67834 -23.67158 -23.06052 -21.34601 -20.11292 -19.42739 -19.33667 -18.85195 -18.45821 -17.98875 -17.89204 -16.96333 -16.84346 -16.34952 -16.00277 -15.66378 -15.55300 -15.40989 -15.10385 -14.99054 -14.87965 -14.70068 -14.60079 -14.20800 -13.91960 -13.45633 -13.37304 -13.25431 -13.09312 -12.81078 -12.70289 -12.50433 -12.32868 -12.24232 -11.97535 -11.58631 -11.03275 -10.76736 -10.57584 -10.26290 -9.69903 -8.93806 -8.89338 -7.83407 -5.33931 0.22821 0.27971 1.45360 1.48865 1.57154 1.57936 1.75582 2.02053 2.38378 2.52993 2.58215 2.61136 2.75371 3.31675 3.54461 3.73334 3.73956 3.79314 3.92165 3.96470 4.12159 4.27215 4.41239 4.48558 4.54304 4.65116 4.74844 4.94034 5.01699 5.24878 5.34453 5.45109 5.54497 5.59562 5.61911 5.68700 6.09741 6.25128 6.53434 7.06875 7.28862 7.36941 7.75443 8.16796 9.17221 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.003156 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.562137 B = 8870.236153 C = 9800.527468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.131 4.131 3 C 0.277 3.723 4 N -0.578 5.578 5 C -0.263 4.263 6 H 0.068 0.932 7 C -0.042 4.042 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.293 1.293 12 H -0.290 1.290 13 C 0.133 3.867 14 C 0.484 3.516 15 O -0.541 6.541 16 N -0.658 5.658 17 C 0.129 3.871 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.174 4.174 22 C 0.061 3.939 23 O -0.328 6.328 24 C 0.408 3.592 25 F -0.210 7.210 26 F -0.208 7.208 27 H 0.226 0.774 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.248 0.752 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.425 0.575 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 2.195 -22.217 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.134 4.134 3 C 0.152 3.848 4 N -0.296 5.296 5 C -0.392 4.392 6 H 0.085 0.915 7 C -0.238 4.238 8 N -0.560 5.560 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.220 1.220 12 H -0.217 1.217 13 C 0.003 3.997 14 C 0.271 3.729 15 O -0.417 6.417 16 N -0.305 5.305 17 C 0.033 3.967 18 C -0.159 4.159 19 C -0.142 4.142 20 C -0.126 4.126 21 C -0.193 4.193 22 C 0.016 3.984 23 O -0.247 6.247 24 C 0.319 3.681 25 F -0.192 7.192 26 F -0.190 7.190 27 H 0.242 0.758 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.262 0.738 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.693 2.438 -21.391 22.863 hybrid contribution 0.083 -0.606 0.718 0.943 sum 7.776 1.831 -20.673 22.163 Atomic orbital electron populations 1.24986 0.96225 1.03698 1.05532 1.24375 0.95707 0.97155 0.96137 1.17505 0.83170 0.85748 0.98353 1.43672 1.73831 1.11889 1.00197 1.19375 1.21778 1.04361 0.93730 0.91452 1.25630 0.97262 1.00661 1.00220 1.70184 1.26309 1.40868 1.18619 0.85233 0.77605 0.78403 0.79266 1.19757 1.22046 1.21703 1.20876 0.90977 1.02459 0.85437 1.23286 0.92527 0.76359 0.80767 1.90540 1.52363 1.44163 1.54590 1.43630 1.10004 1.67073 1.09770 1.17436 0.86065 1.02874 0.90308 1.21683 0.92227 1.01201 1.00751 1.21338 0.96042 0.99823 0.96962 1.21246 1.00044 0.99232 0.92124 1.21533 0.91184 1.04729 1.01842 1.18489 0.88321 1.03856 0.87768 1.86528 1.34511 1.85883 1.17734 1.24258 0.90502 0.71069 0.82261 1.93075 1.88197 1.42020 1.95883 1.93078 1.71007 1.66323 1.88599 0.75765 0.91331 0.93708 0.94223 0.88409 0.88215 0.73751 0.84392 0.83763 0.82538 0.83573 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.36 19.25 74.32 1.43 -10.93 16 2 C -0.13 -6.31 11.50 31.13 0.36 -5.95 16 3 C 0.28 13.74 5.40 84.57 0.46 14.19 16 4 N -0.58 -28.30 1.98 -716.93 -1.42 -29.72 16 5 C -0.26 -14.25 9.68 84.03 0.81 -13.43 16 6 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16 7 C -0.04 -2.30 5.09 84.86 0.43 -1.87 16 8 N -0.91 -52.37 9.08 21.65 0.20 -52.17 16 9 Si 0.97 45.43 29.57 68.60 2.03 47.46 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 C 0.13 5.02 6.16 85.63 0.53 5.55 16 14 C 0.48 17.99 7.76 87.66 0.68 18.67 16 15 O -0.54 -24.67 13.29 -3.08 -0.04 -24.71 16 16 N -0.66 -19.33 5.33 -303.14 -1.62 -20.95 16 17 C 0.13 3.92 6.53 38.19 0.25 4.17 16 18 C -0.14 -4.48 8.80 22.37 0.20 -4.28 16 19 C -0.12 -3.14 10.04 22.27 0.22 -2.92 16 20 C -0.11 -2.32 10.04 22.28 0.22 -2.09 16 21 C -0.17 -3.93 8.26 22.35 0.18 -3.75 16 22 C 0.06 1.55 6.50 22.60 0.15 1.69 16 23 O -0.33 -6.38 9.78 -93.23 -0.91 -7.30 16 24 C 0.41 4.98 5.98 113.37 0.68 5.66 16 25 F -0.21 -3.40 15.59 44.97 0.70 -2.70 16 26 F -0.21 -3.19 15.58 44.97 0.70 -2.49 16 27 H 0.23 7.69 7.80 -4.43 -0.03 7.65 16 28 H 0.07 3.86 6.41 -2.39 -0.02 3.84 16 29 H 0.05 2.05 8.12 -2.38 -0.02 2.03 16 30 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.10 3.18 8.07 -2.39 -0.02 3.16 16 32 H 0.10 3.45 8.04 -2.39 -0.02 3.43 16 33 H 0.42 9.54 8.24 -92.71 -0.76 8.78 16 34 H 0.14 5.37 5.36 -2.91 -0.02 5.35 16 35 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.15 2.83 5.10 -2.91 -0.01 2.81 16 38 H 0.24 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -72.88 340.04 6.60 -66.28 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.36 Total: 21.59 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 6.60 Total: 4.71 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -2.84 Total: -102.85 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.95 Total: -32.00 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 1.40 Total: -5.19 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.88 6.60 -66.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281546488.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.312 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds