Wall clock time and date at job start Tue Mar 31 2020 14:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 O 1.42907 * 109.46778 * 89.97718 * 6 5 4 8 8 C 1.42895 * 113.99581 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46969 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00127 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00118 * 179.97438 * 9 8 7 12 12 C 1.46510 * 120.00283 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46874 * 89.99829 * 12 11 9 14 14 H 1.07994 * 120.00616 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99535 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00438 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00059 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46808 * 60.00404 * 17 15 13 19 19 H 1.48501 * 109.47194 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47013 * 300.00714 * 17 15 13 21 21 C 1.46501 * 120.00149 * 0.02562 * 11 9 8 22 22 C 1.52999 * 109.47240 * 89.99695 * 21 11 9 23 23 C 1.47197 * 109.47608 * 180.02562 * 22 21 11 24 24 N 9.10543 * 150.43159 * 358.90701 * 4 1 2 25 25 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 27 27 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 28 28 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 29 29 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 30 30 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 31 31 H 1.09004 * 109.47516 * 299.99408 * 8 7 6 32 32 H 1.09001 * 109.47475 * 60.00001 * 8 7 6 33 33 H 1.08997 * 109.46942 * 210.00236 * 12 11 9 34 34 H 1.09000 * 109.46694 * 330.00174 * 12 11 9 35 35 H 0.96994 * 120.00551 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.47210 * 209.99335 * 21 11 9 37 37 H 1.09001 * 109.47218 * 329.99975 * 21 11 9 38 38 H 1.09002 * 109.47161 * 300.00571 * 22 21 11 39 39 H 1.09006 * 109.47228 * 60.00009 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 8 5.7696 -1.0104 1.3673 8 6 7.1207 -1.4601 1.4870 9 6 7.4837 -1.5776 2.9449 10 8 6.6658 -1.3037 3.7975 11 7 8.7170 -1.9880 3.3013 12 6 9.0698 -2.1028 4.7187 13 6 8.7413 -3.4900 5.2073 14 1 8.3130 -4.2139 4.5299 15 6 8.9885 -3.8353 6.5190 16 7 9.5105 -2.9540 7.3439 17 14 8.5820 -5.5550 7.1247 18 1 9.3542 -6.5516 6.3398 19 1 8.9395 -5.6713 8.5613 20 1 7.1289 -5.8092 6.9545 21 6 9.7048 -2.3195 2.2715 22 6 10.5050 -1.0664 1.9101 23 6 11.4971 -1.3992 0.8750 24 7 12.2631 -1.6580 0.0756 25 16 2.5060 -1.3906 0.0078 26 1 -0.3635 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 5.3883 -1.8252 -0.4927 30 1 5.9514 -0.1366 -0.4961 31 1 7.2236 -2.4334 1.0071 32 1 7.7860 -0.7446 1.0038 33 1 10.1364 -1.9165 4.8438 34 1 8.5031 -1.3711 5.2945 35 1 9.6848 -3.1970 8.2666 36 1 10.3813 -3.0858 2.6501 37 1 9.1935 -2.6924 1.3841 38 1 9.8286 -0.3001 1.5316 39 1 11.0164 -0.6934 2.7976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285080759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:43 Heat of formation + Delta-G solvation = 16.801309 kcal Electronic energy + Delta-G solvation = -23880.048605 eV Core-core repulsion = 20144.043437 eV Total energy + Delta-G solvation = -3736.005169 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52032 -39.53653 -37.76470 -36.84111 -35.26474 -33.66528 -32.92986 -30.91565 -30.79026 -28.78387 -27.06528 -26.14489 -24.50803 -24.08449 -22.68506 -20.23309 -19.60550 -18.78865 -17.73130 -17.32050 -16.60572 -16.47126 -16.15502 -15.95606 -15.55835 -15.25752 -14.74615 -14.44485 -14.34340 -13.97563 -13.68580 -13.45063 -13.40618 -13.17685 -12.87339 -12.58289 -12.49015 -12.44096 -12.02070 -11.92842 -11.74341 -11.31244 -11.05179 -10.93779 -10.71283 -10.64017 -10.49199 -10.22342 -10.04159 -9.93898 -9.86529 -9.76157 -9.04766 -8.49469 -7.92746 -6.11260 -4.16336 0.08691 0.62125 1.09216 2.23228 2.66495 2.75564 3.08631 3.20241 3.28578 3.33810 3.36981 3.62507 3.89284 4.15396 4.35347 4.41767 4.53011 4.71273 4.85208 4.91949 4.97849 4.99644 5.03583 5.13453 5.15341 5.20113 5.24276 5.25753 5.43434 5.48018 5.75771 5.99512 6.65291 6.94912 7.30348 7.37616 7.52279 7.84271 8.12716 8.16283 8.30283 8.78269 8.92068 9.49215 10.96908 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.003079 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.762601 B = 9093.135881 C =11132.290224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 N -0.263 5.263 4 N -0.238 5.238 5 C -0.018 4.018 6 C 0.141 3.859 7 O -0.352 6.352 8 C 0.041 3.959 9 C 0.508 3.492 10 O -0.509 6.509 11 N -0.595 5.595 12 C 0.246 3.754 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.115 3.885 22 C -0.052 4.052 23 C 0.216 3.784 24 N -0.444 5.444 25 S 0.197 5.803 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 2.348 -17.740 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.299 4.299 3 N -0.102 5.102 4 N -0.078 5.078 5 C -0.297 4.297 6 C 0.061 3.939 7 O -0.269 6.269 8 C -0.039 4.039 9 C 0.293 3.707 10 O -0.382 6.382 11 N -0.329 5.329 12 C 0.128 3.872 13 C -0.570 4.570 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.011 4.011 22 C -0.094 4.094 23 C -0.102 4.102 24 N -0.122 5.122 25 S 0.440 5.560 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.516 2.522 -18.073 21.062 hybrid contribution -0.166 -0.808 0.545 0.989 sum -10.682 1.714 -17.528 20.598 Atomic orbital electron populations 1.20404 0.83793 1.04972 1.04326 1.29329 1.04508 0.92128 1.03905 1.71482 0.96797 1.26784 1.15108 1.71415 1.06536 1.17052 1.12789 1.28691 1.02281 0.92741 1.05961 1.20663 0.86538 1.00655 0.86087 1.88108 1.27813 1.87999 1.23021 1.22514 0.83903 1.00213 0.97275 1.19845 0.82856 0.78788 0.89186 1.90743 1.47982 1.47725 1.51792 1.48175 1.10220 1.65303 1.09203 1.19383 0.96447 0.98006 0.73359 1.21368 1.42438 0.97424 0.95788 0.92366 1.24916 0.94943 0.97573 0.96494 1.69904 1.43388 1.34331 1.05545 0.86569 0.79011 0.84203 0.77715 1.20223 1.21177 1.20146 1.21349 0.92394 0.95055 0.92295 1.19924 0.93942 1.01126 0.94372 1.29130 0.93940 0.93246 0.93846 1.81261 1.10718 1.08755 1.11443 1.83722 0.97222 1.11183 1.63834 0.89052 0.89509 0.88667 0.90344 0.89422 0.90186 0.90304 0.94447 0.93452 0.92547 0.88406 0.90763 0.87551 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.48 36.00 0.38 -0.05 16 2 C -0.02 -0.21 7.53 -13.30 -0.10 -0.31 16 3 N -0.26 -3.62 11.66 32.58 0.38 -3.24 16 4 N -0.24 -3.51 11.66 32.58 0.38 -3.13 16 5 C -0.02 -0.22 7.16 -13.30 -0.10 -0.32 16 6 C 0.14 1.47 6.54 36.01 0.24 1.71 16 7 O -0.35 -5.19 9.86 -55.14 -0.54 -5.73 16 8 C 0.04 0.52 4.97 36.01 0.18 0.70 16 9 C 0.51 9.40 7.75 -10.99 -0.09 9.31 16 10 O -0.51 -12.37 16.08 -14.36 -0.23 -12.60 16 11 N -0.60 -10.53 2.46 -175.05 -0.43 -10.96 16 12 C 0.25 5.74 5.16 -5.19 -0.03 5.71 16 13 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 C 0.12 1.41 5.17 -4.04 -0.02 1.39 16 22 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 23 C 0.22 2.43 15.44 -20.73 -0.32 2.11 16 24 N -0.44 -6.20 18.54 42.19 0.78 -5.42 16 25 S 0.20 1.86 23.04 -107.50 -2.48 -0.62 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.78 7.40 -51.93 -0.38 0.39 16 32 H 0.08 0.71 7.19 -51.93 -0.37 0.34 16 33 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 37 H 0.07 0.70 6.44 -51.93 -0.33 0.36 16 38 H 0.11 0.80 7.22 -51.93 -0.38 0.43 16 39 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -37.20 365.29 -6.15 -43.35 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -4.77 Total: -5.42 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.45 Total: 6.88 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 1.85 Total: -47.34 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.77 Total: -18.33 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.48 Total: -0.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.20 -6.15 -43.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285080759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.147 kcal (2) G-P(sol) polarization free energy of solvation -37.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds