Wall clock time and date at job start Tue Mar 31 2020 14:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 O 1.42907 * 109.46778 * 89.97718 * 6 5 4 8 8 C 1.42895 * 113.99581 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46969 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00127 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00118 * 179.97438 * 9 8 7 12 12 C 1.46510 * 120.00283 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46874 * 89.99829 * 12 11 9 14 14 H 1.07994 * 120.00616 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99535 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00438 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00059 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46808 * 60.00404 * 17 15 13 19 19 H 1.48501 * 109.47194 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47013 * 300.00714 * 17 15 13 21 21 C 1.46501 * 120.00149 * 0.02562 * 11 9 8 22 22 C 1.52999 * 109.47240 * 89.99695 * 21 11 9 23 23 C 1.47197 * 109.47608 * 180.02562 * 22 21 11 24 24 N 9.10543 * 150.43159 * 358.90701 * 4 1 2 25 25 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 27 27 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 28 28 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 29 29 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 30 30 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 31 31 H 1.09004 * 109.47516 * 299.99408 * 8 7 6 32 32 H 1.09001 * 109.47475 * 60.00001 * 8 7 6 33 33 H 1.08997 * 109.46942 * 210.00236 * 12 11 9 34 34 H 1.09000 * 109.46694 * 330.00174 * 12 11 9 35 35 H 0.96994 * 120.00551 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.47210 * 209.99335 * 21 11 9 37 37 H 1.09001 * 109.47218 * 329.99975 * 21 11 9 38 38 H 1.09002 * 109.47161 * 300.00571 * 22 21 11 39 39 H 1.09006 * 109.47228 * 60.00009 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 8 5.7696 -1.0104 1.3673 8 6 7.1207 -1.4601 1.4870 9 6 7.4837 -1.5776 2.9449 10 8 6.6658 -1.3037 3.7975 11 7 8.7170 -1.9880 3.3013 12 6 9.0698 -2.1028 4.7187 13 6 8.7413 -3.4900 5.2073 14 1 8.3130 -4.2139 4.5299 15 6 8.9885 -3.8353 6.5190 16 7 9.5105 -2.9540 7.3439 17 14 8.5820 -5.5550 7.1247 18 1 9.3542 -6.5516 6.3398 19 1 8.9395 -5.6713 8.5613 20 1 7.1289 -5.8092 6.9545 21 6 9.7048 -2.3195 2.2715 22 6 10.5050 -1.0664 1.9101 23 6 11.4971 -1.3992 0.8750 24 7 12.2631 -1.6580 0.0756 25 16 2.5060 -1.3906 0.0078 26 1 -0.3635 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 5.3883 -1.8252 -0.4927 30 1 5.9514 -0.1366 -0.4961 31 1 7.2236 -2.4334 1.0071 32 1 7.7860 -0.7446 1.0038 33 1 10.1364 -1.9165 4.8438 34 1 8.5031 -1.3711 5.2945 35 1 9.6848 -3.1970 8.2666 36 1 10.3813 -3.0858 2.6501 37 1 9.1935 -2.6924 1.3841 38 1 9.8286 -0.3001 1.5316 39 1 11.0164 -0.6934 2.7976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285080759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:43 Heat of formation + Delta-G solvation = -9.820724 kcal Electronic energy + Delta-G solvation = -23881.203023 eV Core-core repulsion = 20144.043437 eV Total energy + Delta-G solvation = -3737.159587 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37719 -40.86725 -38.78046 -37.91387 -36.65150 -34.86777 -34.38895 -32.17057 -31.56986 -30.10994 -28.28209 -27.25509 -25.32747 -25.25686 -24.34807 -21.05169 -20.42291 -20.11644 -18.84687 -18.35873 -18.31701 -17.66513 -17.11797 -17.05355 -16.57670 -16.47918 -15.99009 -15.65512 -15.56222 -15.03671 -14.59743 -14.41922 -14.25928 -14.16810 -13.93865 -13.64655 -13.51996 -13.42591 -13.29006 -13.13396 -12.90611 -12.86119 -12.66648 -12.49560 -12.15442 -11.86460 -11.68358 -11.53190 -11.31448 -10.89135 -10.75834 -10.63518 -10.57258 -10.51293 -9.50104 -8.16897 -6.29338 -0.69248 -0.11344 0.29617 1.35071 1.41464 1.44867 1.51288 1.68173 1.84267 1.86996 2.06702 2.43336 2.72550 3.04976 3.15250 3.30135 3.58436 3.74172 3.86824 4.01665 4.12546 4.13447 4.26798 4.31332 4.36835 4.46344 4.61665 4.62832 4.72047 4.86561 5.06054 5.07524 5.10423 5.34385 5.60201 5.83361 5.97739 6.13358 6.63665 6.73233 6.81353 7.34756 7.46228 7.50511 8.89896 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.003079 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.762601 B = 9093.135881 C =11132.290224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.022 4.022 3 N -0.306 5.306 4 N -0.279 5.279 5 C -0.042 4.042 6 C 0.137 3.863 7 O -0.394 6.394 8 C 0.051 3.949 9 C 0.499 3.501 10 O -0.583 6.583 11 N -0.594 5.594 12 C 0.260 3.740 13 C -0.541 4.541 14 H 0.057 0.943 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.959 3.041 18 H -0.260 1.260 19 H -0.284 1.284 20 H -0.279 1.279 21 C 0.110 3.890 22 C -0.041 4.041 23 C 0.247 3.753 24 N -0.489 5.489 25 S 0.245 5.755 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.039 0.961 34 H 0.000 1.000 35 H 0.265 0.735 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.138 0.862 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 0.743 -20.146 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.300 4.300 3 N -0.145 5.145 4 N -0.118 5.118 5 C -0.322 4.322 6 C 0.058 3.942 7 O -0.313 6.313 8 C -0.028 4.028 9 C 0.287 3.713 10 O -0.462 6.462 11 N -0.326 5.326 12 C 0.139 3.861 13 C -0.580 4.580 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.784 3.216 18 H -0.184 1.184 19 H -0.210 1.210 20 H -0.205 1.205 21 C -0.014 4.014 22 C -0.082 4.082 23 C -0.070 4.070 24 N -0.168 5.168 25 S 0.489 5.511 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.057 0.943 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.156 0.844 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.955 0.903 -20.545 23.301 hybrid contribution -0.094 -0.317 1.284 1.326 sum -11.049 0.586 -19.261 22.213 Atomic orbital electron populations 1.20670 0.80955 1.06013 1.06090 1.30024 1.06279 0.91957 1.01715 1.71428 0.97068 1.28612 1.17418 1.71354 1.07372 1.18836 1.14250 1.29118 1.04201 0.92913 1.05932 1.21008 0.85703 1.03087 0.84430 1.88044 1.28784 1.88551 1.25878 1.22547 0.84166 1.03615 0.92476 1.20996 0.81828 0.76896 0.91589 1.90707 1.50090 1.50901 1.54471 1.48025 1.11538 1.64908 1.08095 1.18823 0.95420 0.95299 0.76589 1.21742 1.41628 0.98580 0.96013 0.92462 1.25758 0.95009 1.01292 0.96914 1.70022 1.44743 1.36198 1.05784 0.85601 0.78505 0.80142 0.77373 1.18447 1.20952 1.20517 1.21631 0.91727 0.96095 0.91960 1.19860 0.93758 1.00503 0.94053 1.29136 0.93086 0.91844 0.92944 1.81312 1.12119 1.10176 1.13147 1.83447 0.95358 1.09619 1.62657 0.86748 0.87333 0.88690 0.86551 0.87693 0.86237 0.85919 0.94341 0.98224 0.92601 0.89404 0.86713 0.84434 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.48 71.23 0.75 0.01 16 2 C -0.02 -0.42 7.53 88.46 0.67 0.24 16 3 N -0.31 -8.48 11.66 -50.85 -0.59 -9.07 16 4 N -0.28 -8.21 11.66 -50.85 -0.59 -8.80 16 5 C -0.04 -0.99 7.16 88.47 0.63 -0.36 16 6 C 0.14 2.47 6.54 71.24 0.47 2.94 16 7 O -0.39 -10.82 9.86 -129.94 -1.28 -12.10 16 8 C 0.05 1.10 4.97 71.24 0.35 1.45 16 9 C 0.50 18.03 7.75 87.66 0.68 18.71 16 10 O -0.58 -29.31 16.08 16.00 0.26 -29.05 16 11 N -0.59 -20.46 2.46 -826.13 -2.03 -22.49 16 12 C 0.26 12.41 5.16 85.63 0.44 12.85 16 13 C -0.54 -28.84 9.39 25.60 0.24 -28.60 16 14 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 15 C 0.01 0.51 5.46 84.65 0.46 0.98 16 16 N -0.93 -53.88 13.29 21.45 0.28 -53.59 16 17 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.11 2.36 5.17 86.38 0.45 2.81 16 22 C -0.04 -0.65 6.03 28.79 0.17 -0.47 16 23 C 0.25 4.82 15.44 89.43 1.38 6.20 16 24 N -0.49 -12.61 18.54 20.02 0.37 -12.24 16 25 S 0.25 4.19 23.04 -56.49 -1.30 2.89 16 26 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.12 1.66 7.40 -2.39 -0.02 1.64 16 32 H 0.12 1.57 7.19 -2.39 -0.02 1.55 16 33 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 34 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.09 2.11 8.07 -2.39 -0.02 2.09 16 37 H 0.11 1.58 6.44 -2.39 -0.02 1.56 16 38 H 0.14 1.44 7.22 -2.39 -0.02 1.42 16 39 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -87.99 365.29 4.92 -83.07 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: 1.09 Total: -0.57 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.69 Total: 16.76 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -2.56 Total: -106.20 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.02 Total: -41.16 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.30 Total: 2.89 kcal Total: -87.99 4.92 -83.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285080759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.248 kcal (2) G-P(sol) polarization free energy of solvation -87.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds