Wall clock time and date at job start Tue Mar 31 2020 13:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37984 * 119.95718 * 2 1 4 4 C 1.39314 * 119.90511 * 179.97438 * 3 2 1 5 5 C 1.48419 * 120.08792 * 180.02562 * 4 3 2 6 6 N 1.30938 * 126.29475 * 359.67027 * 5 4 3 7 7 O 1.21272 * 110.37407 * 179.80263 * 6 5 4 8 8 C 1.34332 * 109.87909 * 0.46558 * 7 6 5 9 9 C 1.47283 * 126.58605 * 179.74726 * 8 7 6 10 10 C 1.39389 * 120.35789 * 176.20495 * 9 8 7 11 11 C 1.38058 * 119.96066 * 179.97438 * 10 9 8 12 12 C 1.38933 * 120.70395 * 0.02562 * 11 10 9 13 13 C 1.36464 * 120.72576 * 0.02562 * 12 11 10 14 14 C 1.40755 * 120.00652 * 359.70487 * 13 12 11 15 15 C 1.40772 * 120.34616 * 180.29877 * 14 13 12 16 16 H 1.08001 * 120.00242 * 212.21055 * 15 14 13 17 17 C 1.40214 * 119.99930 * 32.20650 * 15 14 13 18 18 N 1.30677 * 119.99844 * 9.70741 * 17 15 14 19 19 Si 1.86801 * 120.00150 * 189.70390 * 17 15 14 20 20 H 1.48509 * 109.46721 * 60.00480 * 19 17 15 21 21 H 1.48502 * 109.47111 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47502 * 300.00237 * 19 17 15 23 23 N 1.32219 * 106.82728 * 359.71271 * 8 7 6 24 24 C 1.39364 * 119.81953 * 0.02562 * 4 3 2 25 25 C 1.37935 * 119.90488 * 359.97438 * 24 4 3 26 26 C 1.38544 * 119.95339 * 180.02562 * 2 1 3 27 27 F 1.35110 * 119.90514 * 0.25628 * 26 2 1 28 28 H 1.09006 * 109.46887 * 269.97715 * 1 2 3 29 29 H 1.08991 * 109.46711 * 29.97436 * 1 2 3 30 30 H 1.08995 * 109.47170 * 149.97853 * 1 2 3 31 31 H 1.07998 * 120.04312 * 0.04346 * 3 2 1 32 32 H 1.07997 * 120.01262 * 359.95799 * 10 9 8 33 33 H 1.08002 * 119.64684 * 179.97438 * 11 10 9 34 34 H 1.07995 * 119.63514 * 180.02562 * 12 11 10 35 35 H 1.07997 * 119.99614 * 180.02562 * 13 12 11 36 36 H 0.97001 * 120.00214 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.04725 * 180.02562 * 24 4 3 38 38 H 1.08003 * 119.95221 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1955 0.0000 4 6 3.5892 1.1942 0.0005 5 6 4.3344 2.4778 0.0011 6 7 3.8110 3.6779 -0.0049 7 8 4.6842 4.5194 0.0015 8 6 5.8897 3.9268 0.0022 9 6 7.1992 4.6008 0.0039 10 6 8.3748 3.8560 0.0841 11 6 9.5979 4.4963 0.0845 12 6 9.6737 5.8813 0.0060 13 6 8.5409 6.6382 -0.0726 14 6 7.2781 6.0165 -0.0810 15 6 6.1051 6.7900 -0.1682 16 1 5.2008 6.4564 0.3190 17 6 6.1109 7.9936 -0.8874 18 7 7.1391 8.3054 -1.6312 19 14 4.6488 9.1515 -0.7823 20 1 4.4545 9.5768 0.6272 21 1 4.9005 10.3448 -1.6297 22 1 3.4290 8.4533 -1.2614 23 7 5.6748 2.6222 0.0020 24 6 4.2811 -0.0155 0.0005 25 6 3.5846 -1.2061 0.0005 26 6 2.1988 -1.2004 -0.0005 27 9 1.5203 -2.3688 -0.0063 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5141 31 1 1.6561 2.1308 0.0007 32 1 8.3286 2.7788 0.1463 33 1 10.5055 3.9142 0.1473 34 1 10.6396 6.3642 0.0072 35 1 8.6135 7.7140 -0.1335 36 1 7.1430 9.1378 -2.1290 37 1 5.3611 -0.0208 0.0014 38 1 4.1200 -2.1441 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319707381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:29 Heat of formation + Delta-G solvation = 43.199251 kcal Electronic energy + Delta-G solvation = -25469.621557 eV Core-core repulsion = 21579.397176 eV Total energy + Delta-G solvation = -3890.224381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.02131 -46.10747 -40.30250 -39.54639 -36.66845 -35.70203 -34.32161 -33.82973 -32.04414 -31.40756 -30.61323 -28.11310 -27.46831 -25.55974 -25.08569 -23.51252 -22.90090 -22.41993 -21.41199 -19.54576 -18.78925 -18.67794 -18.33033 -17.68345 -17.21921 -16.78522 -16.69624 -16.56125 -15.83600 -15.33914 -15.22690 -14.55278 -14.48510 -14.42176 -14.34003 -14.17205 -13.83899 -13.81666 -13.56667 -13.36752 -13.14885 -12.90009 -12.85477 -12.70997 -12.39384 -12.27184 -12.18536 -11.92769 -11.57501 -11.50140 -11.39844 -11.20050 -10.06879 -9.64689 -9.44237 -9.24627 -8.80112 -6.55243 -0.49825 -0.07131 0.08944 0.94619 1.13337 1.37225 1.47362 1.51170 1.68762 2.11526 2.15786 2.52514 2.56087 2.65768 3.07720 3.12878 3.57157 3.64239 3.69112 4.00828 4.07034 4.32402 4.41908 4.45693 4.56209 4.66489 4.70073 4.71819 4.78804 4.91130 4.98837 5.00608 5.06113 5.11894 5.13615 5.19433 5.30652 5.32802 5.51496 5.71169 5.84111 5.92626 6.06485 6.17075 6.50500 6.68536 6.78749 7.33080 8.13747 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.003274 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.926951 B = 8550.027221 C =10191.499597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C -0.065 4.065 4 C -0.038 4.038 5 C 0.206 3.794 6 N -0.427 5.427 7 O 0.061 5.939 8 C 0.278 3.722 9 C -0.201 4.201 10 C -0.036 4.036 11 C -0.229 4.229 12 C -0.081 4.081 13 C -0.166 4.166 14 C 0.117 3.883 15 C -0.463 4.463 16 H 0.086 0.914 17 C 0.045 3.955 18 N -0.798 5.798 19 Si 0.975 3.025 20 H -0.254 1.254 21 H -0.258 1.258 22 H -0.268 1.268 23 N -0.527 5.527 24 C -0.058 4.058 25 C -0.140 4.140 26 C 0.106 3.894 27 F -0.132 7.132 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.298 0.702 37 H 0.146 0.854 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -10.827 1.880 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.040 4.040 5 C -0.064 4.064 6 N -0.145 5.145 7 O 0.009 5.991 8 C 0.069 3.931 9 C -0.206 4.206 10 C -0.055 4.055 11 C -0.248 4.248 12 C -0.100 4.100 13 C -0.186 4.186 14 C 0.113 3.887 15 C -0.492 4.492 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.422 5.422 19 Si 0.795 3.205 20 H -0.178 1.178 21 H -0.181 1.181 22 H -0.193 1.193 23 N -0.263 5.263 24 C -0.078 4.078 25 C -0.158 4.158 26 C 0.086 3.914 27 F -0.110 7.110 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.164 0.836 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.995 -10.939 1.697 13.095 hybrid contribution -0.381 0.785 -0.154 0.886 sum -7.376 -10.154 1.543 12.644 Atomic orbital electron populations 1.20812 0.87695 1.04371 1.04020 1.20035 0.98684 0.90632 1.02645 1.20968 0.91802 0.98622 0.97137 1.17601 0.92586 0.87666 1.06102 1.24133 0.87909 0.93863 1.00541 1.74697 1.14757 0.99591 1.25420 1.85546 1.13186 1.32820 1.67516 1.26451 0.89170 0.85983 0.91474 1.17534 0.85297 0.92668 1.25126 1.20828 0.91001 0.98603 0.95097 1.20790 0.96606 0.94503 1.12892 1.21011 0.98099 0.94251 0.96662 1.21090 0.91736 0.99775 1.05953 1.17880 0.94586 0.89619 0.86651 1.20086 0.97498 1.04110 1.27493 0.89638 1.26720 1.00108 0.98451 0.92187 1.69703 1.30602 1.23387 1.18498 0.85333 0.77689 0.77280 0.80184 1.17802 1.18136 1.19289 1.72181 1.12956 1.13879 1.27259 1.21128 1.01314 0.89713 0.95614 1.21284 0.91923 0.99989 1.02639 1.17758 0.90267 0.80987 1.02383 1.91497 1.80139 1.45751 1.93659 0.89426 0.89949 0.90092 0.84507 0.86224 0.84698 0.85350 0.86768 0.89052 0.83625 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.83 71.24 0.70 -1.16 16 2 C -0.12 -2.70 5.88 -19.85 -0.12 -2.82 16 3 C -0.07 -1.82 9.34 22.47 0.21 -1.61 16 4 C -0.04 -1.22 5.88 -20.03 -0.12 -1.34 16 5 C 0.21 8.50 7.79 137.37 1.07 9.57 16 6 N -0.43 -19.15 11.83 -57.34 -0.68 -19.83 16 7 O 0.06 2.95 8.36 68.40 0.57 3.52 16 8 C 0.28 13.29 7.85 87.09 0.68 13.98 16 9 C -0.20 -9.65 5.93 -19.68 -0.12 -9.77 16 10 C -0.04 -1.50 9.70 22.50 0.22 -1.29 16 11 C -0.23 -8.72 10.03 22.39 0.22 -8.50 16 12 C -0.08 -3.24 9.96 22.02 0.22 -3.02 16 13 C -0.17 -7.76 8.58 22.47 0.19 -7.56 16 14 C 0.12 5.90 5.53 -21.10 -0.12 5.78 16 15 C -0.46 -23.51 8.04 23.37 0.19 -23.32 16 16 H 0.09 4.40 5.66 -2.91 -0.02 4.38 16 17 C 0.04 2.09 5.25 85.34 0.45 2.54 16 18 N -0.80 -37.69 11.02 21.87 0.24 -37.45 16 19 Si 0.97 36.37 29.57 68.60 2.03 38.40 16 20 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 N -0.53 -23.20 10.96 -301.98 -3.31 -26.51 16 24 C -0.06 -1.56 9.70 22.47 0.22 -1.34 16 25 C -0.14 -2.97 10.01 22.28 0.22 -2.75 16 26 C 0.11 2.33 7.24 22.43 0.16 2.49 16 27 F -0.13 -2.73 16.46 44.97 0.74 -1.99 16 28 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.08 1.19 7.63 -2.39 -0.02 1.17 16 31 H 0.14 3.84 7.86 -2.91 -0.02 3.82 16 32 H 0.12 4.64 7.88 -2.91 -0.02 4.62 16 33 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.11 5.44 6.45 -2.91 -0.02 5.42 16 36 H 0.30 12.61 8.29 -92.71 -0.77 11.84 16 37 H 0.15 3.89 7.87 -2.91 -0.02 3.86 16 38 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -56.77 338.10 5.01 -51.77 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 1.12 Total: 22.21 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 4.29 Total: -30.12 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.75 Total: -83.79 kcal Atomic # 8 Polarization: 2.95 SS G_CDS: 0.57 Total: 3.52 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.74 Total: -1.99 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -56.77 5.01 -51.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319707381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.965 kcal (2) G-P(sol) polarization free energy of solvation -56.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds