Wall clock time and date at job start Tue Mar 31 2020 13:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38305 * 119.88786 * 2 1 4 4 C 1.38018 * 120.14195 * 179.69787 * 3 2 1 5 5 C 1.39333 * 119.92972 * 0.53656 * 4 3 2 6 6 C 1.48459 * 120.10413 * 179.73961 * 5 4 3 7 7 N 1.30921 * 126.28971 * 179.75227 * 6 5 4 8 8 O 1.21266 * 110.37662 * 180.02562 * 7 6 5 9 9 C 1.34336 * 109.88019 * 359.97438 * 8 7 6 10 10 C 1.47276 * 126.59190 * 179.97438 * 9 8 7 11 11 C 1.39385 * 120.35973 * 174.64769 * 10 9 8 12 12 C 1.38062 * 119.96836 * 180.02562 * 11 10 9 13 13 C 1.38932 * 120.69391 * 0.02562 * 12 11 10 14 14 C 1.36468 * 120.73075 * 359.97438 * 13 12 11 15 15 C 1.40753 * 120.00425 * 359.97438 * 14 13 12 16 16 C 1.40779 * 120.34023 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00082 * 146.64945 * 16 15 14 18 18 C 1.40218 * 120.00016 * 326.64759 * 16 15 14 19 19 N 1.30679 * 119.99955 * 166.97011 * 18 16 15 20 20 Si 1.86808 * 119.99960 * 346.97743 * 18 16 15 21 21 H 1.48499 * 109.47019 * 90.07377 * 20 18 16 22 22 H 1.48499 * 109.46696 * 210.07697 * 20 18 16 23 23 H 1.48496 * 109.46944 * 330.07761 * 20 18 16 24 24 N 1.32224 * 106.81572 * 0.24025 * 9 8 7 25 25 C 1.39260 * 119.79160 * 359.46778 * 5 4 3 26 26 C 1.38279 * 119.85113 * 0.27067 * 25 5 4 27 27 F 1.35102 * 119.96574 * 179.97438 * 26 25 5 28 28 H 1.09007 * 109.46967 * 270.02137 * 1 2 3 29 29 H 1.08995 * 109.47574 * 30.02181 * 1 2 3 30 30 H 1.09005 * 109.47099 * 150.02359 * 1 2 3 31 31 H 1.07998 * 119.92838 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.03288 * 180.29711 * 4 3 2 33 33 H 1.08007 * 120.01170 * 0.04108 * 11 10 9 34 34 H 1.07994 * 119.65739 * 180.02562 * 12 11 10 35 35 H 1.08003 * 119.63556 * 179.72479 * 13 12 11 36 36 H 1.08001 * 119.99251 * 179.97438 * 14 13 12 37 37 H 0.97005 * 119.99338 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.07631 * 180.29770 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1991 0.0000 4 6 3.5763 1.2052 0.0063 5 6 4.2769 0.0009 0.0014 6 6 5.7615 0.0030 0.0023 7 7 6.5379 -1.0512 0.0026 8 8 7.7036 -0.7171 0.0039 9 6 7.7946 0.6232 0.0039 10 6 9.0339 1.4190 0.0058 11 6 8.9798 2.8072 -0.1066 12 6 10.1466 3.5453 -0.1045 13 6 11.3817 2.9190 0.0082 14 6 11.4677 1.5617 0.1198 15 6 10.2971 0.7800 0.1220 16 6 10.3777 -0.6208 0.2362 17 1 9.6037 -1.1656 0.7563 18 6 11.4628 -1.3088 -0.3254 19 7 11.6777 -2.5586 -0.0102 20 14 12.6012 -0.4385 -1.5239 21 1 13.7143 0.1986 -0.7754 22 1 13.1529 -1.4248 -2.4872 23 1 11.8411 0.6023 -2.2615 24 7 6.5578 1.0906 0.0078 25 6 3.5801 -1.2049 0.0013 26 6 2.1974 -1.2008 0.0005 27 9 1.5190 -2.3692 -0.0001 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6532 2.1327 0.0004 32 1 4.1127 2.1426 0.0111 33 1 8.0255 3.3053 -0.1950 34 1 10.0989 4.6207 -0.1914 35 1 12.2839 3.5127 0.0035 36 1 12.4340 1.0872 0.2064 37 1 12.4287 -3.0344 -0.3985 38 1 4.1185 -2.1411 0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320050364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:33 Heat of formation + Delta-G solvation = 58.134311 kcal Electronic energy + Delta-G solvation = -25512.994585 eV Core-core repulsion = 21623.417837 eV Total energy + Delta-G solvation = -3889.576748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.97952 -44.52619 -39.22035 -38.12077 -35.22450 -33.97822 -33.33343 -31.92803 -30.75828 -30.71361 -29.38092 -27.40821 -25.68577 -23.85589 -23.37128 -22.43590 -21.54721 -21.23913 -20.12439 -17.99714 -17.61996 -17.15444 -16.59044 -16.42862 -15.78073 -15.76368 -15.68005 -14.99395 -14.50172 -14.18421 -13.92905 -13.63864 -13.56021 -13.40057 -13.19587 -12.71350 -12.61096 -12.47793 -12.37924 -12.01877 -11.77775 -11.65592 -11.32078 -11.18653 -11.06596 -10.94401 -10.66452 -10.39725 -10.08548 -9.98719 -9.83206 -9.42103 -8.97746 -8.51809 -7.96384 -7.73272 -7.26991 -4.85339 0.71169 1.09462 1.46580 2.39872 2.54560 2.91261 2.98196 3.11640 3.18571 3.67555 3.71304 3.76608 3.82960 4.22698 4.25626 4.49899 4.58744 4.78858 5.01410 5.08518 5.18288 5.33865 5.37389 5.50873 5.65800 5.78273 5.83386 5.87099 5.93506 5.95629 6.11666 6.19828 6.35740 6.37762 6.50961 6.55942 6.67642 6.76265 6.85400 6.99186 7.29662 7.40953 7.53268 7.74837 8.03858 8.23987 8.39075 8.96360 9.71727 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.003134 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.346387 B = 8931.089419 C =10137.818538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.113 4.113 3 C -0.097 4.097 4 C -0.085 4.085 5 C 0.025 3.975 6 C 0.191 3.809 7 N -0.402 5.402 8 O 0.098 5.902 9 C 0.285 3.715 10 C -0.171 4.171 11 C -0.010 4.010 12 C -0.249 4.249 13 C -0.055 4.055 14 C -0.224 4.224 15 C 0.113 3.887 16 C -0.412 4.412 17 H 0.108 0.892 18 C 0.082 3.918 19 N -0.775 5.775 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.240 1.240 24 N -0.519 5.519 25 C -0.120 4.120 26 C 0.093 3.907 27 F -0.137 7.137 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.294 0.706 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.741 5.856 -1.163 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.105 4.105 5 C 0.023 3.977 6 C -0.079 4.079 7 N -0.113 5.113 8 O 0.039 5.961 9 C 0.076 3.924 10 C -0.176 4.176 11 C -0.030 4.030 12 C -0.268 4.268 13 C -0.074 4.074 14 C -0.243 4.243 15 C 0.107 3.893 16 C -0.440 4.440 17 H 0.126 0.874 18 C -0.142 4.142 19 N -0.396 5.396 20 Si 0.740 3.260 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.163 1.163 24 N -0.254 5.254 25 C -0.141 4.141 26 C 0.074 3.926 27 F -0.116 7.116 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.294 4.986 -1.149 13.317 hybrid contribution 0.761 -0.130 -0.401 0.870 sum -11.533 4.856 -1.550 12.609 Atomic orbital electron populations 1.20739 0.90049 1.03358 1.02848 1.20035 0.97103 0.91917 1.02455 1.20849 0.93531 0.97128 0.99957 1.21301 0.93741 0.98015 0.97474 1.17116 0.86297 0.93222 1.01089 1.23449 0.95628 0.85349 1.03449 1.74789 0.90312 1.23680 1.22509 1.85647 1.20041 1.24483 1.65971 1.26180 0.93742 0.80781 0.91733 1.17075 0.86229 0.91100 1.23212 1.20709 0.97684 0.91576 0.93006 1.20360 0.92124 0.98203 1.16116 1.20584 0.96742 0.94507 0.95610 1.20890 0.97637 0.93807 1.11990 1.17604 0.89920 0.93541 0.88200 1.19881 1.06117 0.90744 1.27210 0.87440 1.26357 0.96610 0.94942 0.96255 1.69581 1.25760 1.10477 1.33792 0.86266 0.80016 0.79725 0.79970 1.18864 1.21233 1.16339 1.72166 0.99145 1.27539 1.26547 1.21135 0.92215 0.99387 1.01378 1.17247 0.89361 0.81128 1.04866 1.91481 1.79920 1.46097 1.94055 0.90706 0.90833 0.91171 0.84435 0.83885 0.87004 0.87756 0.88050 0.87118 0.89541 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.83 36.01 0.35 -0.57 16 2 C -0.11 -1.28 5.89 -104.50 -0.62 -1.90 16 3 C -0.10 -1.05 9.68 -39.64 -0.38 -1.43 16 4 C -0.09 -1.16 9.70 -39.25 -0.38 -1.54 16 5 C 0.02 0.41 5.88 -104.90 -0.62 -0.21 16 6 C 0.19 3.88 7.79 -156.35 -1.22 2.66 16 7 N -0.40 -8.93 11.84 31.26 0.37 -8.56 16 8 O 0.10 2.31 8.48 16.29 0.14 2.45 16 9 C 0.28 6.46 7.83 -13.93 -0.11 6.35 16 10 C -0.17 -3.84 5.93 -104.34 -0.62 -4.45 16 11 C -0.01 -0.20 9.70 -39.22 -0.38 -0.58 16 12 C -0.25 -4.57 10.03 -39.39 -0.40 -4.97 16 13 C -0.06 -1.04 9.96 -39.96 -0.40 -1.44 16 14 C -0.22 -4.78 7.08 -39.27 -0.28 -5.06 16 15 C 0.11 2.62 5.09 -106.53 -0.54 2.08 16 16 C -0.41 -10.27 8.42 -37.88 -0.32 -10.59 16 17 H 0.11 2.88 6.16 -52.49 -0.32 2.56 16 18 C 0.08 1.96 5.46 -17.30 -0.09 1.87 16 19 N -0.77 -18.95 13.92 55.56 0.77 -18.18 16 20 Si 0.92 18.73 24.50 -169.99 -4.16 14.56 16 21 H -0.26 -5.08 6.56 56.52 0.37 -4.71 16 22 H -0.29 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.24 -5.05 6.92 56.52 0.39 -4.66 16 24 N -0.52 -10.94 10.96 -10.24 -0.11 -11.05 16 25 C -0.12 -1.85 9.67 -39.19 -0.38 -2.23 16 26 C 0.09 1.26 7.23 -39.47 -0.29 0.97 16 27 F -0.14 -1.84 16.46 2.25 0.04 -1.80 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.07 0.58 7.63 -51.93 -0.40 0.18 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.14 1.89 7.87 -52.49 -0.41 1.48 16 33 H 0.11 2.04 7.89 -52.48 -0.41 1.63 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.11 2.29 4.69 -52.49 -0.25 2.05 16 37 H 0.29 6.42 8.29 -40.82 -0.34 6.08 16 38 H 0.14 2.26 7.86 -52.49 -0.41 1.85 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -26.15 332.69 -8.10 -34.25 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.49 Total: 4.36 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -6.66 Total: -21.04 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 1.03 Total: -37.79 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.14 Total: 2.45 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.16 Total: 14.56 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.15 -8.10 -34.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320050364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.381 kcal (2) G-P(sol) polarization free energy of solvation -26.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds