Wall clock time and date at job start Tue Mar 31 2020 13:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38305 * 119.88786 * 2 1 4 4 C 1.38018 * 120.14195 * 179.69787 * 3 2 1 5 5 C 1.39333 * 119.92972 * 0.53656 * 4 3 2 6 6 C 1.48459 * 120.10413 * 179.73961 * 5 4 3 7 7 N 1.30921 * 126.28971 * 179.75227 * 6 5 4 8 8 O 1.21266 * 110.37662 * 180.02562 * 7 6 5 9 9 C 1.34336 * 109.88019 * 359.97438 * 8 7 6 10 10 C 1.47276 * 126.59190 * 179.97438 * 9 8 7 11 11 C 1.39385 * 120.35973 * 174.64769 * 10 9 8 12 12 C 1.38062 * 119.96836 * 180.02562 * 11 10 9 13 13 C 1.38932 * 120.69391 * 0.02562 * 12 11 10 14 14 C 1.36468 * 120.73075 * 359.97438 * 13 12 11 15 15 C 1.40753 * 120.00425 * 359.97438 * 14 13 12 16 16 C 1.40779 * 120.34023 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00082 * 146.64945 * 16 15 14 18 18 C 1.40218 * 120.00016 * 326.64759 * 16 15 14 19 19 N 1.30679 * 119.99955 * 166.97011 * 18 16 15 20 20 Si 1.86808 * 119.99960 * 346.97743 * 18 16 15 21 21 H 1.48499 * 109.47019 * 90.07377 * 20 18 16 22 22 H 1.48499 * 109.46696 * 210.07697 * 20 18 16 23 23 H 1.48496 * 109.46944 * 330.07761 * 20 18 16 24 24 N 1.32224 * 106.81572 * 0.24025 * 9 8 7 25 25 C 1.39260 * 119.79160 * 359.46778 * 5 4 3 26 26 C 1.38279 * 119.85113 * 0.27067 * 25 5 4 27 27 F 1.35102 * 119.96574 * 179.97438 * 26 25 5 28 28 H 1.09007 * 109.46967 * 270.02137 * 1 2 3 29 29 H 1.08995 * 109.47574 * 30.02181 * 1 2 3 30 30 H 1.09005 * 109.47099 * 150.02359 * 1 2 3 31 31 H 1.07998 * 119.92838 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.03288 * 180.29711 * 4 3 2 33 33 H 1.08007 * 120.01170 * 0.04108 * 11 10 9 34 34 H 1.07994 * 119.65739 * 180.02562 * 12 11 10 35 35 H 1.08003 * 119.63556 * 179.72479 * 13 12 11 36 36 H 1.08001 * 119.99251 * 179.97438 * 14 13 12 37 37 H 0.97005 * 119.99338 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.07631 * 180.29770 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1991 0.0000 4 6 3.5763 1.2052 0.0063 5 6 4.2769 0.0009 0.0014 6 6 5.7615 0.0030 0.0023 7 7 6.5379 -1.0512 0.0026 8 8 7.7036 -0.7171 0.0039 9 6 7.7946 0.6232 0.0039 10 6 9.0339 1.4190 0.0058 11 6 8.9798 2.8072 -0.1066 12 6 10.1466 3.5453 -0.1045 13 6 11.3817 2.9190 0.0082 14 6 11.4677 1.5617 0.1198 15 6 10.2971 0.7800 0.1220 16 6 10.3777 -0.6208 0.2362 17 1 9.6037 -1.1656 0.7563 18 6 11.4628 -1.3088 -0.3254 19 7 11.6777 -2.5586 -0.0102 20 14 12.6012 -0.4385 -1.5239 21 1 13.7143 0.1986 -0.7754 22 1 13.1529 -1.4248 -2.4872 23 1 11.8411 0.6023 -2.2615 24 7 6.5578 1.0906 0.0078 25 6 3.5801 -1.2049 0.0013 26 6 2.1974 -1.2008 0.0005 27 9 1.5190 -2.3692 -0.0001 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6532 2.1327 0.0004 32 1 4.1127 2.1426 0.0111 33 1 8.0255 3.3053 -0.1950 34 1 10.0989 4.6207 -0.1914 35 1 12.2839 3.5127 0.0035 36 1 12.4340 1.0872 0.2064 37 1 12.4287 -3.0344 -0.3985 38 1 4.1185 -2.1411 0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320050364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:32 Heat of formation + Delta-G solvation = 44.318556 kcal Electronic energy + Delta-G solvation = -25513.593681 eV Core-core repulsion = 21623.417837 eV Total energy + Delta-G solvation = -3890.175844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.04646 -46.20935 -40.29898 -39.76484 -36.78453 -35.69067 -34.68269 -33.30546 -32.40270 -31.80942 -30.96740 -28.43397 -27.39668 -25.40189 -24.67308 -23.70018 -23.08393 -22.64318 -21.59050 -19.66671 -19.07726 -18.85604 -17.93130 -17.71643 -17.27871 -16.83108 -16.76933 -16.59356 -15.85832 -15.76294 -15.38252 -14.94293 -14.66370 -14.45262 -14.35656 -14.24581 -14.06492 -13.65687 -13.62622 -13.42084 -13.33632 -12.89521 -12.69637 -12.60790 -12.44447 -12.32621 -12.20764 -12.07411 -11.72726 -11.64988 -11.42272 -11.05424 -10.05867 -9.69423 -9.61046 -9.36083 -9.01724 -6.66746 -0.51752 -0.17586 0.03518 0.77434 1.01217 1.26095 1.38454 1.49158 1.61177 2.01855 2.11804 2.41286 2.50910 2.55729 3.02638 3.19366 3.38120 3.64485 3.69213 3.95881 4.06823 4.22828 4.27896 4.38079 4.50706 4.56818 4.63381 4.72193 4.77906 4.84605 4.85845 4.93184 4.96207 5.05871 5.16652 5.18965 5.25204 5.29996 5.37217 5.70218 5.73313 5.75790 5.90157 6.07571 6.26356 6.53420 6.60731 7.25263 8.03995 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.003134 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.346387 B = 8931.089419 C =10137.818538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.080 4.080 4 C -0.080 4.080 5 C -0.013 4.013 6 C 0.204 3.796 7 N -0.431 5.431 8 O 0.064 5.936 9 C 0.271 3.729 10 C -0.188 4.188 11 C -0.019 4.019 12 C -0.225 4.225 13 C -0.047 4.047 14 C -0.241 4.241 15 C 0.102 3.898 16 C -0.453 4.453 17 H 0.067 0.933 18 C 0.047 3.953 19 N -0.824 5.824 20 Si 0.967 3.033 21 H -0.238 1.238 22 H -0.279 1.279 23 H -0.248 1.248 24 N -0.514 5.514 25 C -0.132 4.132 26 C 0.082 3.918 27 F -0.139 7.139 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.184 0.816 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.115 0.885 37 H 0.301 0.699 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.279 10.279 -1.850 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.098 4.098 4 C -0.100 4.100 5 C -0.015 4.015 6 C -0.067 4.067 7 N -0.147 5.147 8 O 0.012 5.988 9 C 0.061 3.939 10 C -0.193 4.193 11 C -0.038 4.038 12 C -0.244 4.244 13 C -0.065 4.065 14 C -0.260 4.260 15 C 0.097 3.903 16 C -0.481 4.481 17 H 0.085 0.915 18 C -0.171 4.171 19 N -0.448 5.448 20 Si 0.788 3.212 21 H -0.162 1.162 22 H -0.205 1.205 23 H -0.171 1.171 24 N -0.249 5.249 25 C -0.152 4.152 26 C 0.063 3.937 27 F -0.118 7.118 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.201 0.799 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.796 9.413 -1.822 16.800 hybrid contribution 0.933 -1.282 -0.142 1.592 sum -12.864 8.131 -1.964 15.344 Atomic orbital electron populations 1.20887 0.87147 1.04786 1.04228 1.20511 0.99067 0.90853 0.99193 1.21299 0.92183 0.98739 0.97529 1.21473 0.95115 0.96790 0.96642 1.17235 0.84233 0.94990 1.05023 1.24174 0.97328 0.84513 1.00691 1.74776 0.90194 1.24808 1.24960 1.85640 1.20879 1.25228 1.67060 1.26585 0.94701 0.80728 0.91839 1.17485 0.85885 0.92501 1.23465 1.21006 0.99487 0.90363 0.92958 1.20926 0.91067 1.00258 1.12175 1.21093 0.98807 0.93632 0.93010 1.21049 0.96933 0.95089 1.12893 1.17801 0.91334 0.93095 0.88024 1.19751 1.06433 0.91850 1.30093 0.91511 1.27077 0.97540 0.95371 0.97143 1.69620 1.27323 1.11881 1.35967 0.85503 0.78804 0.78723 0.78159 1.16192 1.20526 1.17142 1.72147 0.98541 1.27596 1.26646 1.21038 0.93362 0.98467 1.02379 1.17374 0.88639 0.82119 1.05611 1.91475 1.79676 1.46462 1.94143 0.89132 0.87960 0.91289 0.79854 0.83404 0.85327 0.83431 0.83655 0.86709 0.88808 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.83 71.24 0.70 -0.66 16 2 C -0.09 -1.84 5.89 -19.78 -0.12 -1.95 16 3 C -0.08 -1.42 9.68 22.23 0.22 -1.21 16 4 C -0.08 -2.05 9.70 22.48 0.22 -1.83 16 5 C -0.01 -0.44 5.88 -20.04 -0.12 -0.55 16 6 C 0.20 8.70 7.79 137.39 1.07 9.77 16 7 N -0.43 -20.88 11.84 -57.37 -0.68 -21.55 16 8 O 0.06 3.34 8.48 68.36 0.58 3.92 16 9 C 0.27 12.98 7.83 87.09 0.68 13.66 16 10 C -0.19 -8.61 5.93 -19.68 -0.12 -8.73 16 11 C -0.02 -0.70 9.70 22.50 0.22 -0.48 16 12 C -0.23 -7.27 10.03 22.39 0.22 -7.04 16 13 C -0.05 -1.57 9.96 22.02 0.22 -1.35 16 14 C -0.24 -9.93 7.08 22.47 0.16 -9.77 16 15 C 0.10 4.91 5.09 -21.10 -0.11 4.80 16 16 C -0.45 -24.35 8.42 23.37 0.20 -24.16 16 17 H 0.07 4.02 6.16 -2.91 -0.02 4.00 16 18 C 0.05 2.39 5.46 85.35 0.47 2.85 16 19 N -0.82 -43.29 13.92 21.87 0.30 -42.98 16 20 Si 0.97 38.95 24.50 68.60 1.68 40.64 16 21 H -0.24 -8.52 6.56 99.48 0.65 -7.86 16 22 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.25 -10.15 6.92 99.48 0.69 -9.46 16 24 N -0.51 -22.35 10.96 -302.02 -3.31 -25.66 16 25 C -0.13 -4.21 9.67 22.53 0.22 -3.99 16 26 C 0.08 2.14 7.23 22.34 0.16 2.31 16 27 F -0.14 -3.68 16.46 44.97 0.74 -2.94 16 28 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.10 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.07 0.90 7.63 -2.38 -0.02 0.88 16 31 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.15 3.61 7.87 -2.91 -0.02 3.59 16 33 H 0.13 4.37 7.89 -2.91 -0.02 4.35 16 34 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.12 4.59 4.69 -2.91 -0.01 4.58 16 37 H 0.30 14.03 8.29 -92.70 -0.77 13.26 16 38 H 0.12 4.33 7.86 -2.91 -0.02 4.30 16 Total: -1.00 -63.60 332.69 4.66 -58.94 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.05 Total: 17.98 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 4.29 Total: -28.34 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -3.69 Total: -90.20 kcal Atomic # 8 Polarization: 3.34 SS G_CDS: 0.58 Total: 3.92 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.74 Total: -2.94 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.68 Total: 40.64 kcal Total: -63.60 4.66 -58.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320050364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.262 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds