Wall clock time and date at job start Tue Mar 31 2020 13:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38061 * 120.03613 * 2 1 4 4 C 1.38255 * 120.15063 * 179.97438 * 3 2 1 5 5 C 1.38559 * 120.20983 * 0.02562 * 4 3 2 6 6 F 1.35108 * 119.96442 * 179.97438 * 5 4 3 7 7 C 1.38223 * 120.06962 * 359.97438 * 5 4 3 8 8 C 1.39300 * 120.03628 * 179.71788 * 2 1 3 9 9 C 1.48452 * 120.10578 * 0.02562 * 8 2 1 10 10 N 1.30916 * 126.28768 * 0.02729 * 9 8 2 11 11 O 1.21275 * 110.37419 * 179.97438 * 10 9 8 12 12 C 1.34329 * 109.87884 * 359.97438 * 11 10 9 13 13 C 1.47287 * 126.58802 * 179.97438 * 12 11 10 14 14 C 1.39378 * 120.35315 * 176.25067 * 13 12 11 15 15 C 1.38069 * 119.96252 * 180.02562 * 14 13 12 16 16 C 1.38927 * 120.69610 * 0.02562 * 15 14 13 17 17 C 1.36470 * 120.73052 * 359.97438 * 16 15 14 18 18 C 1.40759 * 120.00218 * 359.71977 * 17 16 15 19 19 C 1.40774 * 120.33937 * 180.30072 * 18 17 16 20 20 H 1.07999 * 119.99930 * 212.19340 * 19 18 17 21 21 C 1.40216 * 120.00200 * 32.19834 * 19 18 17 22 22 N 1.30682 * 119.99815 * 9.69947 * 21 19 18 23 23 Si 1.86793 * 120.00222 * 189.69982 * 21 19 18 24 24 H 1.48504 * 109.47538 * 90.00022 * 23 21 19 25 25 H 1.48508 * 109.47288 * 210.00063 * 23 21 19 26 26 H 1.48499 * 109.47321 * 330.00012 * 23 21 19 27 27 N 1.32222 * 106.82044 * 359.73566 * 12 11 10 28 28 H 1.09000 * 109.46807 * 90.00189 * 1 2 3 29 29 H 1.08998 * 109.47187 * 330.00158 * 1 2 3 30 30 H 1.08999 * 109.46842 * 210.00281 * 1 2 3 31 31 H 1.08001 * 119.91987 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.89366 * 180.02562 * 4 3 2 33 33 H 1.08010 * 120.07385 * 180.02562 * 7 5 4 34 34 H 1.08003 * 120.02064 * 359.97438 * 14 13 12 35 35 H 1.07995 * 119.65042 * 179.97438 * 15 14 13 36 36 H 1.07996 * 119.63755 * 179.97438 * 16 15 14 37 37 H 1.07997 * 119.99351 * 180.02562 * 17 16 15 38 38 H 0.97000 * 120.00136 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1952 0.0000 4 6 3.5806 1.1980 0.0005 5 6 4.2801 0.0020 0.0005 6 9 5.6312 0.0104 0.0005 7 6 3.5973 -1.1998 0.0005 8 6 2.2042 -1.2059 0.0059 9 6 1.4651 -2.4934 0.0117 10 7 0.1642 -2.6400 0.0114 11 8 -0.1280 -3.8170 0.0165 12 6 0.9879 -4.5647 0.0201 13 6 1.0590 -6.0358 0.0271 14 6 2.2917 -6.6818 -0.0484 15 6 2.3489 -8.0613 -0.0418 16 6 1.1872 -8.8189 0.0391 17 6 -0.0348 -8.2159 0.1142 18 6 -0.1276 -6.8113 0.1162 19 6 -1.3840 -6.1819 0.1998 20 1 -1.5469 -5.2340 -0.2915 21 6 -2.4240 -6.7855 0.9210 22 7 -2.1805 -7.8287 1.6695 23 14 -4.1576 -6.0986 0.8119 24 1 -4.8823 -6.7583 -0.3039 25 1 -4.8733 -6.3558 2.0875 26 1 -4.0958 -4.6355 0.5654 27 7 2.0103 -3.7263 0.0109 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6573 2.1301 -0.0004 32 1 4.1169 2.1354 0.0010 33 1 4.1425 -2.1322 0.0010 34 1 3.2017 -6.1036 -0.1129 35 1 3.3067 -8.5566 -0.1009 36 1 1.2517 -9.8969 0.0426 37 1 -0.9302 -8.8164 0.1771 38 1 -2.8998 -8.2461 2.1687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320227834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:35 Heat of formation + Delta-G solvation = 62.872805 kcal Electronic energy + Delta-G solvation = -25856.763361 eV Core-core repulsion = 21967.392089 eV Total energy + Delta-G solvation = -3889.371272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.91165 -44.47093 -39.30544 -37.84763 -35.04008 -34.00238 -33.11831 -32.07384 -30.92406 -29.87406 -29.10189 -26.78407 -25.74238 -24.44782 -23.23304 -22.16217 -21.47856 -20.93703 -19.99715 -17.97882 -17.44617 -17.13209 -16.64508 -16.15567 -15.64973 -15.62231 -15.46425 -15.03400 -14.43878 -14.22055 -13.75902 -13.65719 -13.53690 -13.40730 -12.88976 -12.54379 -12.41833 -12.08435 -11.97069 -11.74320 -11.53705 -11.36998 -11.31088 -11.16282 -11.10357 -10.93751 -10.68812 -10.27558 -9.89678 -9.88819 -9.76980 -9.53601 -8.87176 -8.47971 -7.71991 -7.56900 -7.11074 -4.77075 0.75325 1.09678 1.61176 2.56136 2.69517 2.93853 2.98625 3.05690 3.30203 3.71209 3.72202 3.77177 3.90026 4.24204 4.36149 4.53242 4.82605 4.86192 5.00733 5.20479 5.32305 5.47267 5.66735 5.77432 5.81515 5.89010 6.01419 6.02419 6.12499 6.19095 6.30759 6.36226 6.52215 6.65535 6.69403 6.74782 6.83196 6.84247 7.01866 7.22803 7.52260 7.66274 7.77038 7.88246 8.25241 8.43275 8.52310 9.01766 9.80083 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.003760 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.932106 B = 7444.165575 C = 9221.607722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.098 4.098 4 C -0.141 4.141 5 C 0.086 3.914 6 F -0.139 7.139 7 C -0.110 4.110 8 C 0.023 3.977 9 C 0.198 3.802 10 N -0.403 5.403 11 O 0.079 5.921 12 C 0.293 3.707 13 C -0.182 4.182 14 C -0.028 4.028 15 C -0.237 4.237 16 C -0.087 4.087 17 C -0.145 4.145 18 C 0.141 3.859 19 C -0.432 4.432 20 H 0.098 0.902 21 C 0.076 3.924 22 N -0.773 5.773 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.254 1.254 27 N -0.525 5.525 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 10.096 -1.810 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 C -0.116 4.116 4 C -0.161 4.161 5 C 0.067 3.933 6 F -0.118 7.118 7 C -0.131 4.131 8 C 0.021 3.979 9 C -0.071 4.071 10 N -0.119 5.119 11 O 0.025 5.975 12 C 0.086 3.914 13 C -0.187 4.187 14 C -0.048 4.048 15 C -0.257 4.257 16 C -0.106 4.106 17 C -0.164 4.164 18 C 0.136 3.864 19 C -0.461 4.461 20 H 0.115 0.885 21 C -0.146 4.146 22 N -0.396 5.396 23 Si 0.738 3.262 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.177 1.177 27 N -0.260 5.260 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.111 10.693 -1.646 11.257 hybrid contribution -0.429 0.015 0.135 0.450 sum 2.682 10.708 -1.511 11.141 Atomic orbital electron populations 1.21183 0.89760 1.04434 1.03274 1.20082 0.97281 0.91441 0.97663 1.20784 0.92928 0.97663 1.00223 1.21193 0.94900 0.97071 1.02908 1.17452 0.76967 0.94170 1.04743 1.91501 1.28776 1.97390 1.94135 1.21169 0.93558 0.98042 1.00326 1.17079 0.91157 0.87930 1.01695 1.23400 0.87735 0.93114 1.02891 1.74739 1.15525 0.97750 1.23837 1.85586 1.34431 1.10865 1.66632 1.26233 0.78672 0.95639 0.90894 1.17225 0.94863 0.82010 1.24644 1.20588 0.95031 0.94025 0.95127 1.20371 0.97161 0.93082 1.15091 1.20647 0.93281 0.98074 0.98605 1.21075 0.96808 0.94283 1.04236 1.17576 0.90946 0.91819 0.86042 1.20020 0.94359 1.05951 1.25728 0.88463 1.26080 1.01819 0.93767 0.92944 1.69700 1.35376 1.16569 1.17985 0.86146 0.79959 0.81178 0.78886 1.18773 1.19842 1.17739 1.72212 1.28797 0.97970 1.27029 0.90775 0.91721 0.88035 0.84542 0.84573 0.83403 0.87535 0.88317 0.88566 0.85851 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.20 36.00 0.33 -1.42 16 2 C -0.06 -0.88 5.91 -104.29 -0.62 -1.50 16 3 C -0.10 -1.09 9.69 -39.64 -0.38 -1.48 16 4 C -0.14 -1.57 10.02 -39.46 -0.40 -1.97 16 5 C 0.09 1.15 7.29 -39.47 -0.29 0.87 16 6 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 7 C -0.11 -1.70 9.68 -39.19 -0.38 -2.08 16 8 C 0.02 0.39 5.88 -104.90 -0.62 -0.23 16 9 C 0.20 3.99 7.66 -156.35 -1.20 2.80 16 10 N -0.40 -8.40 8.69 31.26 0.27 -8.13 16 11 O 0.08 1.80 8.36 16.31 0.14 1.94 16 12 C 0.29 6.74 7.85 -13.92 -0.11 6.63 16 13 C -0.18 -4.26 5.93 -104.34 -0.62 -4.88 16 14 C -0.03 -0.60 9.70 -39.22 -0.38 -0.98 16 15 C -0.24 -4.80 10.03 -39.39 -0.39 -5.20 16 16 C -0.09 -1.79 9.96 -39.96 -0.40 -2.19 16 17 C -0.14 -3.33 8.58 -39.27 -0.34 -3.66 16 18 C 0.14 3.41 5.53 -106.53 -0.59 2.82 16 19 C -0.43 -10.38 8.05 -37.88 -0.30 -10.68 16 20 H 0.10 2.32 5.66 -52.49 -0.30 2.02 16 21 C 0.08 1.71 5.25 -17.30 -0.09 1.62 16 22 N -0.77 -17.78 11.02 55.56 0.61 -17.17 16 23 Si 0.92 17.19 29.57 -169.99 -5.03 12.16 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 25 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 26 H -0.25 -4.86 7.11 56.52 0.40 -4.46 16 27 N -0.52 -11.41 10.96 -10.25 -0.11 -11.52 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 30 H 0.10 1.65 5.15 -51.93 -0.27 1.38 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.15 2.34 7.87 -52.48 -0.41 1.92 16 34 H 0.11 2.15 7.88 -52.48 -0.41 1.73 16 35 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.12 2.86 6.45 -52.49 -0.34 2.52 16 38 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -25.30 333.14 -9.23 -34.52 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.40 Total: 6.56 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -6.77 Total: -21.53 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.77 Total: -36.82 kcal Atomic # 8 Polarization: 1.80 SS G_CDS: 0.14 Total: 1.94 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.30 -9.23 -34.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320227834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.394 kcal (2) G-P(sol) polarization free energy of solvation -25.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds