Wall clock time and date at job start Tue Mar 31 2020 13:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38061 * 120.03613 * 2 1 4 4 C 1.38255 * 120.15063 * 179.97438 * 3 2 1 5 5 C 1.38559 * 120.20983 * 0.02562 * 4 3 2 6 6 F 1.35108 * 119.96442 * 179.97438 * 5 4 3 7 7 C 1.38223 * 120.06962 * 359.97438 * 5 4 3 8 8 C 1.39300 * 120.03628 * 179.71788 * 2 1 3 9 9 C 1.48452 * 120.10578 * 0.02562 * 8 2 1 10 10 N 1.30916 * 126.28768 * 0.02729 * 9 8 2 11 11 O 1.21275 * 110.37419 * 179.97438 * 10 9 8 12 12 C 1.34329 * 109.87884 * 359.97438 * 11 10 9 13 13 C 1.47287 * 126.58802 * 179.97438 * 12 11 10 14 14 C 1.39378 * 120.35315 * 176.25067 * 13 12 11 15 15 C 1.38069 * 119.96252 * 180.02562 * 14 13 12 16 16 C 1.38927 * 120.69610 * 0.02562 * 15 14 13 17 17 C 1.36470 * 120.73052 * 359.97438 * 16 15 14 18 18 C 1.40759 * 120.00218 * 359.71977 * 17 16 15 19 19 C 1.40774 * 120.33937 * 180.30072 * 18 17 16 20 20 H 1.07999 * 119.99930 * 212.19340 * 19 18 17 21 21 C 1.40216 * 120.00200 * 32.19834 * 19 18 17 22 22 N 1.30682 * 119.99815 * 9.69947 * 21 19 18 23 23 Si 1.86793 * 120.00222 * 189.69982 * 21 19 18 24 24 H 1.48504 * 109.47538 * 90.00022 * 23 21 19 25 25 H 1.48508 * 109.47288 * 210.00063 * 23 21 19 26 26 H 1.48499 * 109.47321 * 330.00012 * 23 21 19 27 27 N 1.32222 * 106.82044 * 359.73566 * 12 11 10 28 28 H 1.09000 * 109.46807 * 90.00189 * 1 2 3 29 29 H 1.08998 * 109.47187 * 330.00158 * 1 2 3 30 30 H 1.08999 * 109.46842 * 210.00281 * 1 2 3 31 31 H 1.08001 * 119.91987 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.89366 * 180.02562 * 4 3 2 33 33 H 1.08010 * 120.07385 * 180.02562 * 7 5 4 34 34 H 1.08003 * 120.02064 * 359.97438 * 14 13 12 35 35 H 1.07995 * 119.65042 * 179.97438 * 15 14 13 36 36 H 1.07996 * 119.63755 * 179.97438 * 16 15 14 37 37 H 1.07997 * 119.99351 * 180.02562 * 17 16 15 38 38 H 0.97000 * 120.00136 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1952 0.0000 4 6 3.5806 1.1980 0.0005 5 6 4.2801 0.0020 0.0005 6 9 5.6312 0.0104 0.0005 7 6 3.5973 -1.1998 0.0005 8 6 2.2042 -1.2059 0.0059 9 6 1.4651 -2.4934 0.0117 10 7 0.1642 -2.6400 0.0114 11 8 -0.1280 -3.8170 0.0165 12 6 0.9879 -4.5647 0.0201 13 6 1.0590 -6.0358 0.0271 14 6 2.2917 -6.6818 -0.0484 15 6 2.3489 -8.0613 -0.0418 16 6 1.1872 -8.8189 0.0391 17 6 -0.0348 -8.2159 0.1142 18 6 -0.1276 -6.8113 0.1162 19 6 -1.3840 -6.1819 0.1998 20 1 -1.5469 -5.2340 -0.2915 21 6 -2.4240 -6.7855 0.9210 22 7 -2.1805 -7.8287 1.6695 23 14 -4.1576 -6.0986 0.8119 24 1 -4.8823 -6.7583 -0.3039 25 1 -4.8733 -6.3558 2.0875 26 1 -4.0958 -4.6355 0.5654 27 7 2.0103 -3.7263 0.0109 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6573 2.1301 -0.0004 32 1 4.1169 2.1354 0.0010 33 1 4.1425 -2.1322 0.0010 34 1 3.2017 -6.1036 -0.1129 35 1 3.3067 -8.5566 -0.1009 36 1 1.2517 -9.8969 0.0426 37 1 -0.9302 -8.8164 0.1771 38 1 -2.8998 -8.2461 2.1687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320227834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:34 Heat of formation + Delta-G solvation = 52.011890 kcal Electronic energy + Delta-G solvation = -25857.234325 eV Core-core repulsion = 21967.392089 eV Total energy + Delta-G solvation = -3889.842236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.96205 -46.10527 -40.39246 -39.55824 -36.62991 -35.70352 -34.51514 -33.31763 -32.24002 -31.53136 -30.73270 -27.89142 -27.45517 -25.81562 -24.81157 -23.47352 -22.81294 -22.61925 -21.44139 -19.60470 -18.85172 -18.77038 -17.95973 -17.55382 -17.17131 -16.68184 -16.59992 -16.52259 -15.91006 -15.71018 -15.20591 -14.77322 -14.71846 -14.54521 -14.45991 -14.18134 -13.83403 -13.79575 -13.23340 -13.15381 -12.93707 -12.81180 -12.72557 -12.57672 -12.43538 -12.33152 -12.22652 -11.85353 -11.58159 -11.47620 -11.41188 -11.19726 -10.03450 -9.60237 -9.45865 -9.27282 -8.80387 -6.55725 -0.45249 -0.07284 0.05689 0.93318 1.15206 1.37967 1.48520 1.51968 1.70190 2.09698 2.16301 2.50712 2.53704 2.65056 2.99102 3.33674 3.56255 3.74975 3.83339 3.89418 4.13993 4.17002 4.38805 4.49340 4.59255 4.69752 4.72832 4.75752 4.89720 4.93071 4.95008 5.01190 5.05244 5.12206 5.12374 5.26616 5.34724 5.48590 5.50128 5.77392 5.83098 5.91839 6.04911 6.16037 6.49720 6.68029 6.77788 7.33255 8.13761 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.003760 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.932106 B = 7444.165575 C = 9221.607722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.082 4.082 4 C -0.118 4.118 5 C 0.079 3.921 6 F -0.141 7.141 7 C -0.123 4.123 8 C -0.014 4.014 9 C 0.204 3.796 10 N -0.408 5.408 11 O 0.056 5.944 12 C 0.280 3.720 13 C -0.202 4.202 14 C -0.038 4.038 15 C -0.229 4.229 16 C -0.081 4.081 17 C -0.166 4.166 18 C 0.118 3.882 19 C -0.462 4.462 20 H 0.087 0.913 21 C 0.044 3.956 22 N -0.798 5.798 23 Si 0.976 3.024 24 H -0.252 1.252 25 H -0.262 1.262 26 H -0.264 1.264 27 N -0.534 5.534 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 12.330 -1.816 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.100 4.100 4 C -0.137 4.137 5 C 0.060 3.940 6 F -0.120 7.120 7 C -0.143 4.143 8 C -0.016 4.016 9 C -0.066 4.066 10 N -0.126 5.126 11 O 0.006 5.994 12 C 0.071 3.929 13 C -0.208 4.208 14 C -0.057 4.057 15 C -0.249 4.249 16 C -0.100 4.100 17 C -0.185 4.185 18 C 0.114 3.886 19 C -0.490 4.490 20 H 0.105 0.895 21 C -0.175 4.175 22 N -0.422 5.422 23 Si 0.797 3.203 24 H -0.176 1.176 25 H -0.186 1.186 26 H -0.188 1.188 27 N -0.270 5.270 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.198 0.802 32 H 0.194 0.806 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.681 12.886 -1.653 13.503 hybrid contribution -0.419 -0.563 0.131 0.713 sum 3.263 12.324 -1.522 12.839 Atomic orbital electron populations 1.21154 0.89545 1.04450 1.03346 1.20317 0.97638 0.91573 0.97214 1.21229 0.93000 0.97928 0.97795 1.21654 0.94995 0.97477 0.99553 1.17569 0.76971 0.94354 1.05091 1.91499 1.28881 1.97391 1.94184 1.21080 0.93223 0.98618 1.01423 1.17237 0.91650 0.87359 1.05358 1.24072 0.87687 0.93979 1.00894 1.74809 1.15968 0.96828 1.25030 1.85571 1.34799 1.11631 1.67379 1.26387 0.79160 0.95926 0.91398 1.17534 0.95578 0.82457 1.25192 1.20811 0.94675 0.94960 0.95283 1.20772 0.98554 0.92522 1.13004 1.21003 0.92460 0.99851 0.96704 1.21104 0.97654 0.93844 1.05888 1.17876 0.91421 0.92723 0.86628 1.20126 0.95449 1.06200 1.27215 0.89492 1.26751 1.04718 0.93924 0.92141 1.69714 1.36714 1.17381 1.18404 0.85256 0.75816 0.79755 0.79517 1.17640 1.18624 1.18829 1.72201 1.28741 0.98706 1.27364 0.90642 0.88328 0.91237 0.80157 0.80578 0.85061 0.86662 0.84850 0.85315 0.86657 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.20 71.23 0.66 -2.62 16 2 C -0.07 -1.72 5.91 -19.65 -0.12 -1.83 16 3 C -0.08 -1.46 9.69 22.23 0.22 -1.25 16 4 C -0.12 -2.10 10.02 22.35 0.22 -1.88 16 5 C 0.08 1.97 7.29 22.34 0.16 2.14 16 6 F -0.14 -3.56 17.27 44.97 0.78 -2.78 16 7 C -0.12 -3.80 9.68 22.52 0.22 -3.58 16 8 C -0.01 -0.48 5.88 -20.04 -0.12 -0.59 16 9 C 0.20 8.56 7.66 137.39 1.05 9.61 16 10 N -0.41 -17.88 8.69 -57.38 -0.50 -18.37 16 11 O 0.06 2.70 8.36 68.43 0.57 3.28 16 12 C 0.28 13.60 7.85 87.09 0.68 14.28 16 13 C -0.20 -9.90 5.93 -19.68 -0.12 -10.02 16 14 C -0.04 -1.64 9.70 22.50 0.22 -1.42 16 15 C -0.23 -9.01 10.03 22.39 0.22 -8.78 16 16 C -0.08 -3.29 9.96 22.02 0.22 -3.07 16 17 C -0.17 -7.80 8.58 22.47 0.19 -7.60 16 18 C 0.12 5.98 5.53 -21.10 -0.12 5.87 16 19 C -0.46 -23.37 8.05 23.37 0.19 -23.18 16 20 H 0.09 4.46 5.66 -2.91 -0.02 4.44 16 21 C 0.04 2.05 5.25 85.34 0.45 2.49 16 22 N -0.80 -37.66 11.02 21.87 0.24 -37.42 16 23 Si 0.98 36.01 29.57 68.60 2.03 38.04 16 24 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 25 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 N -0.53 -24.42 10.96 -302.02 -3.31 -27.73 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 30 H 0.07 2.28 5.15 -2.39 -0.01 2.27 16 31 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.13 4.37 7.87 -2.91 -0.02 4.34 16 34 H 0.12 4.72 7.88 -2.91 -0.02 4.70 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.12 5.52 6.45 -2.91 -0.02 5.50 16 38 H 0.30 12.55 8.29 -92.71 -0.77 11.78 16 Total: -1.00 -58.74 333.14 5.17 -53.56 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 1.13 Total: 22.88 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 4.24 Total: -31.45 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.57 Total: -83.52 kcal Atomic # 8 Polarization: 2.70 SS G_CDS: 0.57 Total: 3.28 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -58.74 5.17 -53.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320227834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.576 kcal (2) G-P(sol) polarization free energy of solvation -58.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds