Wall clock time and date at job start Tue Mar 31 2020 13:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37976 * 120.05141 * 2 1 4 4 C 1.38533 * 120.09634 * 180.02562 * 3 2 1 5 5 F 1.35105 * 119.90945 * 179.97438 * 4 3 2 6 6 C 1.38587 * 120.18721 * 359.97438 * 4 3 2 7 7 C 1.37928 * 120.09330 * 359.97438 * 6 4 3 8 8 C 1.39329 * 120.04505 * 179.72056 * 2 1 3 9 9 C 1.48411 * 120.09157 * 359.97438 * 8 2 1 10 10 N 1.30941 * 126.29716 * 0.03496 * 9 8 2 11 11 O 1.21268 * 110.37203 * 179.97438 * 10 9 8 12 12 C 1.34325 * 109.88495 * 359.97438 * 11 10 9 13 13 C 1.47282 * 126.58488 * 180.02562 * 12 11 10 14 14 C 1.39389 * 120.35384 * 176.27147 * 13 12 11 15 15 C 1.38065 * 119.95795 * 179.97438 * 14 13 12 16 16 C 1.38929 * 120.70171 * 359.97438 * 15 14 13 17 17 C 1.36463 * 120.73162 * 0.02562 * 16 15 14 18 18 C 1.40759 * 120.00175 * 359.70404 * 17 16 15 19 19 C 1.40776 * 120.34072 * 180.29666 * 18 17 16 20 20 H 1.07996 * 119.99958 * 212.18753 * 19 18 17 21 21 C 1.40213 * 119.99986 * 32.18910 * 19 18 17 22 22 N 1.30673 * 120.00053 * 9.70429 * 21 19 18 23 23 Si 1.86801 * 119.99955 * 189.70032 * 21 19 18 24 24 H 1.48495 * 109.47230 * 59.99945 * 23 21 19 25 25 H 1.48495 * 109.47056 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46885 * 299.99885 * 23 21 19 27 27 N 1.32217 * 106.82479 * 359.76039 * 12 11 10 28 28 H 1.09003 * 109.47028 * 90.00562 * 1 2 3 29 29 H 1.08998 * 109.47434 * 330.00124 * 1 2 3 30 30 H 1.09001 * 109.47229 * 210.00228 * 1 2 3 31 31 H 1.08006 * 119.94688 * 359.96863 * 3 2 1 32 32 H 1.08003 * 119.95186 * 179.97438 * 6 4 3 33 33 H 1.08003 * 120.05177 * 179.97438 * 7 6 4 34 34 H 1.07994 * 120.01871 * 359.94807 * 14 13 12 35 35 H 1.08006 * 119.64571 * 179.97438 * 15 14 13 36 36 H 1.08000 * 119.63694 * 180.02562 * 16 15 14 37 37 H 1.07995 * 120.00103 * 180.02562 * 17 16 15 38 38 H 0.97004 * 119.99939 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5833 1.1954 -0.0005 5 9 4.2560 2.3670 -0.0011 6 6 4.2811 -0.0020 -0.0005 7 6 3.5982 -1.2004 0.0005 8 6 2.2046 -1.2061 0.0059 9 6 1.4656 -2.4931 0.0127 10 7 0.1644 -2.6398 0.0133 11 8 -0.1277 -3.8168 0.0192 12 6 0.9882 -4.5645 0.0224 13 6 1.0592 -6.0356 0.0290 14 6 2.2920 -6.6816 -0.0465 15 6 2.3491 -8.0611 -0.0391 16 6 1.1874 -8.8186 0.0435 17 6 -0.0345 -8.2157 0.1185 18 6 -0.1274 -6.8111 0.1191 19 6 -1.3838 -6.1816 0.2026 20 1 -1.5468 -5.2342 -0.2895 21 6 -2.4235 -6.7846 0.9247 22 7 -2.1796 -7.8270 1.6740 23 14 -4.1572 -6.0978 0.8155 24 1 -4.6223 -6.1494 -0.5938 25 1 -5.0650 -6.9079 1.6669 26 1 -4.1624 -4.6897 1.2873 27 7 2.0106 -3.7261 0.0127 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5139 31 1 1.6579 2.1296 -0.0005 32 1 5.3611 0.0033 -0.0014 33 1 4.1427 -2.1331 0.0001 34 1 3.2019 -6.1035 -0.1110 35 1 3.3070 -8.5565 -0.0982 36 1 1.2521 -9.8967 0.0483 37 1 -0.9299 -8.8160 0.1827 38 1 -2.8990 -8.2444 2.1733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320236559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:38 Heat of formation + Delta-G solvation = 62.128391 kcal Electronic energy + Delta-G solvation = -25774.385047 eV Core-core repulsion = 21884.981495 eV Total energy + Delta-G solvation = -3889.403552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.02215 -44.44955 -39.30304 -37.84742 -34.98401 -33.99879 -33.26011 -32.23132 -30.55853 -29.80361 -29.05472 -27.25085 -25.74449 -24.20243 -23.14186 -22.18864 -21.52851 -20.92827 -19.99051 -17.87200 -17.29682 -17.12887 -16.95086 -16.46367 -15.72318 -15.65327 -15.49126 -15.03807 -14.25696 -14.08043 -13.67949 -13.64792 -13.42434 -13.31166 -12.88840 -12.68661 -12.53962 -12.09511 -12.06037 -11.98795 -11.51201 -11.35014 -11.21206 -11.11894 -11.07226 -10.92297 -10.70737 -10.27896 -9.90361 -9.82642 -9.76619 -9.52420 -9.01046 -8.43230 -7.72167 -7.56177 -7.10984 -4.77051 0.73402 1.13267 1.61539 2.56562 2.69481 2.92977 2.96975 3.06387 3.30211 3.71844 3.73565 3.80599 4.01216 4.11453 4.36259 4.51640 4.71261 4.81298 5.05577 5.30351 5.34156 5.55615 5.57711 5.76050 5.79651 5.88730 6.00171 6.02005 6.11244 6.19211 6.31394 6.39371 6.49911 6.65265 6.68892 6.75005 6.83399 6.84158 7.02162 7.22573 7.52025 7.66140 7.76800 7.88130 8.24967 8.43242 8.52224 9.03656 9.80121 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.003524 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.661686 B = 7944.569602 C = 9590.719451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.024 4.024 3 C -0.161 4.161 4 C 0.108 3.892 5 F -0.141 7.141 6 C -0.165 4.165 7 C -0.046 4.046 8 C -0.017 4.017 9 C 0.202 3.798 10 N -0.407 5.407 11 O 0.078 5.922 12 C 0.293 3.707 13 C -0.182 4.182 14 C -0.028 4.028 15 C -0.238 4.238 16 C -0.087 4.087 17 C -0.145 4.145 18 C 0.141 3.859 19 C -0.432 4.432 20 H 0.097 0.903 21 C 0.076 3.924 22 N -0.773 5.773 23 Si 0.916 3.084 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.258 1.258 27 N -0.526 5.526 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 8.821 -1.812 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 C -0.180 4.180 4 C 0.088 3.912 5 F -0.119 7.119 6 C -0.184 4.184 7 C -0.066 4.066 8 C -0.018 4.018 9 C -0.068 4.068 10 N -0.123 5.123 11 O 0.024 5.976 12 C 0.085 3.915 13 C -0.187 4.187 14 C -0.048 4.048 15 C -0.258 4.258 16 C -0.106 4.106 17 C -0.164 4.164 18 C 0.136 3.864 19 C -0.461 4.461 20 H 0.115 0.885 21 C -0.146 4.146 22 N -0.397 5.397 23 Si 0.739 3.261 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.182 1.182 27 N -0.261 5.261 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.911 9.458 -1.646 10.367 hybrid contribution -0.582 0.284 0.134 0.661 sum 3.329 9.743 -1.512 10.406 Atomic orbital electron populations 1.21229 0.89525 1.04620 1.03480 1.19830 0.97111 0.90721 0.94928 1.20876 0.92086 0.98955 1.06066 1.17799 0.90129 0.81192 1.02033 1.91492 1.80486 1.46104 1.93830 1.21030 1.00953 0.90744 1.05627 1.21095 0.92569 0.98364 0.94572 1.17399 0.92265 0.87707 1.04478 1.23429 0.87693 0.93166 1.02513 1.74731 1.15651 0.97720 1.24214 1.85575 1.34431 1.10892 1.66712 1.26222 0.78731 0.95626 0.90902 1.17224 0.94842 0.82044 1.24624 1.20581 0.95018 0.94003 0.95163 1.20369 0.97146 0.93096 1.15147 1.20644 0.93288 0.98069 0.98634 1.21072 0.96808 0.94286 1.04237 1.17573 0.90944 0.91817 0.86052 1.19979 0.94394 1.05970 1.25721 0.88518 1.26074 1.01804 0.93755 0.92947 1.69690 1.35502 1.16558 1.17921 0.86190 0.79638 0.80368 0.79895 1.18252 1.19946 1.18240 1.72194 1.28795 0.97970 1.27166 0.90512 0.91616 0.87758 0.84370 0.84262 0.83584 0.87539 0.88336 0.88581 0.85864 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.20 36.01 0.33 -1.47 16 2 C -0.02 -0.34 5.91 -104.31 -0.62 -0.96 16 3 C -0.16 -1.99 9.67 -39.57 -0.38 -2.37 16 4 C 0.11 1.35 7.30 -39.34 -0.29 1.06 16 5 F -0.14 -1.71 17.26 2.25 0.04 -1.68 16 6 C -0.16 -1.99 10.01 -39.57 -0.40 -2.38 16 7 C -0.05 -0.65 9.70 -39.28 -0.38 -1.03 16 8 C -0.02 -0.27 5.88 -104.88 -0.62 -0.89 16 9 C 0.20 3.99 7.66 -156.34 -1.20 2.80 16 10 N -0.41 -8.43 8.69 31.26 0.27 -8.16 16 11 O 0.08 1.75 8.36 16.32 0.14 1.89 16 12 C 0.29 6.66 7.85 -13.93 -0.11 6.55 16 13 C -0.18 -4.22 5.93 -104.33 -0.62 -4.83 16 14 C -0.03 -0.59 9.70 -39.22 -0.38 -0.97 16 15 C -0.24 -4.76 10.03 -39.39 -0.39 -5.15 16 16 C -0.09 -1.79 9.96 -39.97 -0.40 -2.19 16 17 C -0.14 -3.31 8.58 -39.27 -0.34 -3.65 16 18 C 0.14 3.39 5.53 -106.53 -0.59 2.80 16 19 C -0.43 -10.35 8.05 -37.88 -0.30 -10.66 16 20 H 0.10 2.30 5.66 -52.49 -0.30 2.00 16 21 C 0.08 1.71 5.25 -17.30 -0.09 1.62 16 22 N -0.77 -17.76 11.02 55.56 0.61 -17.15 16 23 Si 0.92 17.20 29.57 -169.99 -5.03 12.17 16 24 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 25 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 26 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 27 N -0.53 -11.19 10.96 -10.25 -0.11 -11.30 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.10 1.70 5.15 -51.93 -0.27 1.43 16 31 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.15 2.02 7.87 -52.48 -0.41 1.61 16 34 H 0.11 2.10 7.88 -52.49 -0.41 1.69 16 35 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.12 2.85 6.45 -52.49 -0.34 2.51 16 38 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -24.96 333.13 -9.23 -34.19 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.40 Total: 6.74 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -6.77 Total: -21.73 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.77 Total: -36.60 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.14 Total: 1.89 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -24.96 -9.23 -34.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320236559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.315 kcal (2) G-P(sol) polarization free energy of solvation -24.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds