Wall clock time and date at job start Tue Mar 31 2020 13:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37976 * 120.05141 * 2 1 4 4 C 1.38533 * 120.09634 * 180.02562 * 3 2 1 5 5 F 1.35105 * 119.90945 * 179.97438 * 4 3 2 6 6 C 1.38587 * 120.18721 * 359.97438 * 4 3 2 7 7 C 1.37928 * 120.09330 * 359.97438 * 6 4 3 8 8 C 1.39329 * 120.04505 * 179.72056 * 2 1 3 9 9 C 1.48411 * 120.09157 * 359.97438 * 8 2 1 10 10 N 1.30941 * 126.29716 * 0.03496 * 9 8 2 11 11 O 1.21268 * 110.37203 * 179.97438 * 10 9 8 12 12 C 1.34325 * 109.88495 * 359.97438 * 11 10 9 13 13 C 1.47282 * 126.58488 * 180.02562 * 12 11 10 14 14 C 1.39389 * 120.35384 * 176.27147 * 13 12 11 15 15 C 1.38065 * 119.95795 * 179.97438 * 14 13 12 16 16 C 1.38929 * 120.70171 * 359.97438 * 15 14 13 17 17 C 1.36463 * 120.73162 * 0.02562 * 16 15 14 18 18 C 1.40759 * 120.00175 * 359.70404 * 17 16 15 19 19 C 1.40776 * 120.34072 * 180.29666 * 18 17 16 20 20 H 1.07996 * 119.99958 * 212.18753 * 19 18 17 21 21 C 1.40213 * 119.99986 * 32.18910 * 19 18 17 22 22 N 1.30673 * 120.00053 * 9.70429 * 21 19 18 23 23 Si 1.86801 * 119.99955 * 189.70032 * 21 19 18 24 24 H 1.48495 * 109.47230 * 59.99945 * 23 21 19 25 25 H 1.48495 * 109.47056 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46885 * 299.99885 * 23 21 19 27 27 N 1.32217 * 106.82479 * 359.76039 * 12 11 10 28 28 H 1.09003 * 109.47028 * 90.00562 * 1 2 3 29 29 H 1.08998 * 109.47434 * 330.00124 * 1 2 3 30 30 H 1.09001 * 109.47229 * 210.00228 * 1 2 3 31 31 H 1.08006 * 119.94688 * 359.96863 * 3 2 1 32 32 H 1.08003 * 119.95186 * 179.97438 * 6 4 3 33 33 H 1.08003 * 120.05177 * 179.97438 * 7 6 4 34 34 H 1.07994 * 120.01871 * 359.94807 * 14 13 12 35 35 H 1.08006 * 119.64571 * 179.97438 * 15 14 13 36 36 H 1.08000 * 119.63694 * 180.02562 * 16 15 14 37 37 H 1.07995 * 120.00103 * 180.02562 * 17 16 15 38 38 H 0.97004 * 119.99939 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5833 1.1954 -0.0005 5 9 4.2560 2.3670 -0.0011 6 6 4.2811 -0.0020 -0.0005 7 6 3.5982 -1.2004 0.0005 8 6 2.2046 -1.2061 0.0059 9 6 1.4656 -2.4931 0.0127 10 7 0.1644 -2.6398 0.0133 11 8 -0.1277 -3.8168 0.0192 12 6 0.9882 -4.5645 0.0224 13 6 1.0592 -6.0356 0.0290 14 6 2.2920 -6.6816 -0.0465 15 6 2.3491 -8.0611 -0.0391 16 6 1.1874 -8.8186 0.0435 17 6 -0.0345 -8.2157 0.1185 18 6 -0.1274 -6.8111 0.1191 19 6 -1.3838 -6.1816 0.2026 20 1 -1.5468 -5.2342 -0.2895 21 6 -2.4235 -6.7846 0.9247 22 7 -2.1796 -7.8270 1.6740 23 14 -4.1572 -6.0978 0.8155 24 1 -4.6223 -6.1494 -0.5938 25 1 -5.0650 -6.9079 1.6669 26 1 -4.1624 -4.6897 1.2873 27 7 2.0106 -3.7261 0.0127 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5139 31 1 1.6579 2.1296 -0.0005 32 1 5.3611 0.0033 -0.0014 33 1 4.1427 -2.1331 0.0001 34 1 3.2019 -6.1035 -0.1110 35 1 3.3070 -8.5565 -0.0982 36 1 1.2521 -9.8967 0.0483 37 1 -0.9299 -8.8160 0.1827 38 1 -2.8990 -8.2444 2.1733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320236559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:38 Heat of formation + Delta-G solvation = 51.960857 kcal Electronic energy + Delta-G solvation = -25774.825944 eV Core-core repulsion = 21884.981495 eV Total energy + Delta-G solvation = -3889.844449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.00616 -46.06389 -40.39972 -39.53511 -36.56524 -35.68318 -34.55709 -33.56976 -31.96932 -31.36770 -30.63132 -28.33728 -27.45431 -25.61856 -24.68655 -23.42041 -22.88998 -22.58399 -21.44380 -19.55084 -18.75709 -18.48097 -18.28159 -17.70162 -17.16581 -16.87642 -16.70214 -16.57474 -15.84360 -15.36833 -15.12902 -14.76562 -14.56621 -14.45364 -14.39327 -14.16993 -13.88991 -13.79757 -13.36927 -13.25314 -13.09908 -12.88869 -12.73001 -12.58510 -12.40435 -12.23998 -12.13856 -11.84888 -11.56239 -11.43890 -11.37158 -11.18970 -10.03769 -9.65421 -9.43495 -9.23371 -8.79041 -6.54024 -0.46829 -0.05405 0.11385 0.95478 1.15700 1.37958 1.48118 1.51893 1.71587 2.13565 2.16594 2.53255 2.60573 2.66994 3.07264 3.16238 3.58236 3.64585 3.73675 4.03783 4.14524 4.29683 4.42485 4.51283 4.55788 4.61667 4.70625 4.74456 4.83022 4.95066 4.98255 5.00910 5.03183 5.13238 5.15515 5.27478 5.36890 5.44518 5.52410 5.74363 5.85077 5.93837 6.07131 6.18026 6.51518 6.69740 6.79727 7.37509 8.14809 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.003524 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.661686 B = 7944.569602 C = 9590.719451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 C -0.153 4.153 4 C 0.115 3.885 5 F -0.135 7.135 6 C -0.154 4.154 7 C -0.048 4.048 8 C -0.052 4.052 9 C 0.208 3.792 10 N -0.414 5.414 11 O 0.054 5.946 12 C 0.279 3.721 13 C -0.201 4.201 14 C -0.036 4.036 15 C -0.230 4.230 16 C -0.082 4.082 17 C -0.167 4.167 18 C 0.118 3.882 19 C -0.463 4.463 20 H 0.087 0.913 21 C 0.045 3.955 22 N -0.799 5.799 23 Si 0.975 3.025 24 H -0.254 1.254 25 H -0.259 1.259 26 H -0.267 1.267 27 N -0.529 5.529 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 10.170 -1.860 11.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.030 4.030 3 C -0.171 4.171 4 C 0.095 3.905 5 F -0.113 7.113 6 C -0.173 4.173 7 C -0.068 4.068 8 C -0.054 4.054 9 C -0.062 4.062 10 N -0.134 5.134 11 O 0.005 5.995 12 C 0.070 3.930 13 C -0.206 4.206 14 C -0.056 4.056 15 C -0.249 4.249 16 C -0.101 4.101 17 C -0.186 4.186 18 C 0.113 3.887 19 C -0.492 4.492 20 H 0.105 0.895 21 C -0.175 4.175 22 N -0.423 5.423 23 Si 0.795 3.205 24 H -0.178 1.178 25 H -0.183 1.183 26 H -0.191 1.191 27 N -0.265 5.265 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.184 0.816 32 H 0.186 0.814 33 H 0.163 0.837 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.193 10.773 -1.697 12.079 hybrid contribution -0.769 -0.010 0.138 0.781 sum 4.424 10.763 -1.559 11.741 Atomic orbital electron populations 1.21186 0.89390 1.04526 1.03556 1.19923 0.97379 0.90733 0.94941 1.21088 0.92261 0.99143 1.04638 1.17890 0.90255 0.81398 1.00919 1.91517 1.80365 1.45801 1.93636 1.21258 1.02352 0.89682 1.03973 1.21128 0.91691 0.99328 0.94643 1.17615 0.93235 0.86810 1.07716 1.24075 0.87575 0.94035 1.00509 1.74804 1.16281 0.96836 1.25435 1.85564 1.34872 1.11646 1.67435 1.26385 0.79237 0.95922 0.91444 1.17532 0.95540 0.82503 1.25033 1.20826 0.94722 0.94895 0.95128 1.20781 0.98498 0.92607 1.12992 1.21002 0.92513 0.99830 0.96734 1.21092 0.97643 0.93874 1.06004 1.17877 0.91463 0.92719 0.86643 1.20088 0.95527 1.06253 1.27286 0.89520 1.26724 1.04634 0.93919 0.92193 1.69707 1.36753 1.17413 1.18429 0.85329 0.75763 0.79243 0.80136 1.17841 1.18271 1.19135 1.72176 1.28533 0.98493 1.27307 0.90352 0.88759 0.90640 0.81587 0.81364 0.83736 0.86296 0.84785 0.85426 0.86801 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.20 71.24 0.66 -2.80 16 2 C -0.03 -0.75 5.91 -19.66 -0.12 -0.87 16 3 C -0.15 -3.31 9.67 22.28 0.22 -3.10 16 4 C 0.12 2.48 7.30 22.42 0.16 2.65 16 5 F -0.13 -2.79 17.26 44.97 0.78 -2.01 16 6 C -0.15 -3.28 10.01 22.28 0.22 -3.06 16 7 C -0.05 -1.30 9.70 22.47 0.22 -1.08 16 8 C -0.05 -1.68 5.88 -20.03 -0.12 -1.79 16 9 C 0.21 8.44 7.66 137.37 1.05 9.50 16 10 N -0.41 -17.89 8.69 -57.36 -0.50 -18.39 16 11 O 0.05 2.57 8.36 68.47 0.57 3.14 16 12 C 0.28 13.21 7.85 87.09 0.68 13.89 16 13 C -0.20 -9.61 5.93 -19.68 -0.12 -9.73 16 14 C -0.04 -1.52 9.70 22.51 0.22 -1.30 16 15 C -0.23 -8.78 10.03 22.39 0.22 -8.56 16 16 C -0.08 -3.27 9.96 22.02 0.22 -3.05 16 17 C -0.17 -7.78 8.58 22.47 0.19 -7.59 16 18 C 0.12 5.89 5.53 -21.10 -0.12 5.78 16 19 C -0.46 -23.33 8.05 23.37 0.19 -23.14 16 20 H 0.09 4.41 5.66 -2.91 -0.02 4.39 16 21 C 0.04 2.07 5.25 85.35 0.45 2.52 16 22 N -0.80 -37.67 11.02 21.87 0.24 -37.43 16 23 Si 0.97 36.10 29.57 68.60 2.03 38.13 16 24 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 25 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 26 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 27 N -0.53 -23.11 10.96 -302.01 -3.31 -26.42 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 30 H 0.08 2.51 5.15 -2.39 -0.01 2.49 16 31 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.14 3.89 7.87 -2.91 -0.02 3.87 16 34 H 0.12 4.62 7.88 -2.91 -0.02 4.60 16 35 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.11 5.43 6.45 -2.91 -0.02 5.41 16 38 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 Total: -1.00 -55.95 333.13 5.17 -50.78 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.13 Total: 23.95 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.24 Total: -31.74 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -3.57 Total: -82.24 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.57 Total: 3.14 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -55.95 5.17 -50.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320236559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.737 kcal (2) G-P(sol) polarization free energy of solvation -55.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds