Wall clock time and date at job start Tue Mar 31 2020 13:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38298 * 119.92461 * 2 1 4 4 C 1.38520 * 120.21033 * 179.73067 * 3 2 1 5 5 F 1.35107 * 119.96759 * 180.28210 * 4 3 2 6 6 C 1.38273 * 120.06882 * 0.54683 * 4 3 2 7 7 C 1.39265 * 119.84733 * 359.47649 * 6 4 3 8 8 C 1.48461 * 120.10206 * 180.26965 * 7 6 4 9 9 N 1.30913 * 126.29098 * 180.02562 * 8 7 6 10 10 O 1.21271 * 110.37970 * 180.02562 * 9 8 7 11 11 C 1.34328 * 109.87690 * 359.97438 * 10 9 8 12 12 C 1.47280 * 126.58897 * 180.02562 * 11 10 9 13 13 C 1.39384 * 120.35535 * 176.31750 * 12 11 10 14 14 C 1.38064 * 119.96481 * 179.97438 * 13 12 11 15 15 C 1.38936 * 120.69479 * 0.03048 * 14 13 12 16 16 C 1.36456 * 120.72929 * 359.97438 * 15 14 13 17 17 C 1.40757 * 120.00704 * 359.70602 * 16 15 14 18 18 C 1.40777 * 120.34252 * 180.29601 * 17 16 15 19 19 H 1.08001 * 119.99750 * 212.16559 * 18 17 16 20 20 C 1.40209 * 120.00383 * 32.17188 * 18 17 16 21 21 N 1.30679 * 119.99825 * 9.68323 * 20 18 17 22 22 Si 1.86802 * 120.00419 * 189.68627 * 20 18 17 23 23 H 1.48494 * 109.47060 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46932 * 119.99984 * 22 20 18 25 25 H 1.48496 * 109.46965 * 239.99545 * 22 20 18 26 26 N 1.32219 * 106.82016 * 359.74013 * 11 10 9 27 27 C 1.38006 * 119.92609 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46820 * 269.97520 * 1 2 3 29 29 H 1.09003 * 109.47550 * 29.97340 * 1 2 3 30 30 H 1.08998 * 109.47611 * 149.97855 * 1 2 3 31 31 H 1.08002 * 119.89836 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.07775 * 179.74929 * 6 4 3 33 33 H 1.08004 * 120.01951 * 0.02562 * 13 12 11 34 34 H 1.07998 * 119.65192 * 180.02562 * 14 13 12 35 35 H 1.08002 * 119.63249 * 179.97438 * 15 14 13 36 36 H 1.08001 * 119.99679 * 179.97438 * 16 15 14 37 37 H 0.97003 * 120.00412 * 180.02562 * 21 20 18 38 38 H 1.07998 * 120.03468 * 359.97093 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5821 1.2055 0.0056 5 9 4.2511 2.3793 0.0114 6 6 4.2809 0.0124 -0.0001 7 6 3.5888 -1.1962 -0.0006 8 6 4.3334 -2.4806 -0.0007 9 7 3.8092 -3.6801 -0.0016 10 8 4.6817 -4.5223 -0.0010 11 6 5.8876 -3.9306 -0.0001 12 6 7.1967 -4.6055 0.0003 13 6 8.3729 -3.8615 -0.0761 14 6 9.5957 -4.5025 -0.0745 15 6 9.6702 -5.8877 0.0019 16 6 8.5368 -6.6438 0.0776 17 6 7.2744 -6.0213 0.0851 18 6 6.1008 -6.7941 0.1693 19 1 5.1973 -6.4587 -0.3181 20 6 6.1048 -7.9992 0.8859 21 7 7.1321 -8.3135 1.6300 22 14 4.6417 -9.1556 0.7771 23 1 3.6161 -8.5726 -0.1246 24 1 5.0861 -10.4668 0.2401 25 1 4.0600 -9.3463 2.1300 26 7 5.6736 -2.6259 -0.0061 27 6 2.1955 -1.1961 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6540 2.1323 0.0004 32 1 5.3608 0.0176 0.0001 33 1 8.3277 -2.7840 -0.1356 34 1 10.5038 -3.9210 -0.1335 35 1 10.6359 -6.3714 0.0014 36 1 8.6085 -7.7199 0.1362 37 1 7.1351 -9.1474 2.1256 38 1 1.6548 -2.1310 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320353277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:36 Heat of formation + Delta-G solvation = 53.941058 kcal Electronic energy + Delta-G solvation = -25497.438167 eV Core-core repulsion = 21607.679586 eV Total energy + Delta-G solvation = -3889.758581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.94748 -44.47777 -39.28722 -37.84776 -35.17817 -34.01590 -33.05460 -32.25757 -30.64812 -29.83456 -29.06889 -27.24673 -25.76183 -24.42757 -23.50586 -21.96176 -21.48865 -20.87117 -19.97115 -17.88529 -17.26432 -17.12175 -16.48757 -16.27093 -16.21566 -15.67012 -15.61588 -15.00171 -14.39392 -14.19882 -13.82299 -13.58318 -13.51708 -13.36027 -12.89951 -12.55625 -12.32590 -12.30334 -12.08144 -11.97025 -11.69228 -11.50888 -11.33684 -11.32022 -11.07336 -10.90072 -10.67175 -10.35091 -9.89042 -9.86051 -9.80329 -9.54825 -8.77980 -8.64738 -7.71867 -7.56679 -7.11011 -4.76891 0.73791 1.07559 1.61128 2.55098 2.68202 2.94362 3.02141 3.03876 3.29357 3.72419 3.72978 3.75331 3.87677 4.17195 4.36212 4.45848 4.81403 4.90778 5.07049 5.15724 5.22075 5.32351 5.38756 5.46949 5.67190 5.85228 5.92922 6.02597 6.05657 6.17359 6.26167 6.32843 6.34567 6.63495 6.69406 6.74309 6.77409 6.84278 7.00687 7.22904 7.52245 7.66489 7.77154 7.88419 8.25571 8.43474 8.52444 9.00598 9.80106 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.003484 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.351212 B = 8034.841496 C = 9832.984126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.148 4.148 4 C 0.099 3.901 5 F -0.138 7.138 6 C -0.121 4.121 7 C 0.035 3.965 8 C 0.193 3.807 9 N -0.407 5.407 10 O 0.086 5.914 11 C 0.291 3.709 12 C -0.182 4.182 13 C -0.028 4.028 14 C -0.237 4.237 15 C -0.087 4.087 16 C -0.145 4.145 17 C 0.141 3.859 18 C -0.432 4.432 19 H 0.098 0.902 20 C 0.076 3.924 21 N -0.773 5.773 22 Si 0.915 3.085 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.269 1.269 26 N -0.524 5.524 27 C -0.101 4.101 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.289 0.711 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 8.957 -1.786 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.062 4.062 3 C -0.168 4.168 4 C 0.080 3.920 5 F -0.117 7.117 6 C -0.142 4.142 7 C 0.034 3.966 8 C -0.077 4.077 9 N -0.120 5.120 10 O 0.029 5.971 11 C 0.084 3.916 12 C -0.187 4.187 13 C -0.048 4.048 14 C -0.257 4.257 15 C -0.106 4.106 16 C -0.164 4.164 17 C 0.136 3.864 18 C -0.460 4.460 19 H 0.116 0.884 20 C -0.146 4.146 21 N -0.396 5.396 22 Si 0.738 3.262 23 H -0.176 1.176 24 H -0.193 1.193 25 H -0.194 1.194 26 N -0.259 5.259 27 C -0.121 4.121 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.250 9.099 -1.626 12.390 hybrid contribution -0.159 -0.475 0.182 0.533 sum -8.409 8.624 -1.444 12.131 Atomic orbital electron populations 1.20802 0.90052 1.03253 1.02833 1.19602 0.96530 0.91642 0.98455 1.21062 0.92132 0.99263 1.04335 1.17435 0.90017 0.81014 1.03521 1.91506 1.80712 1.45422 1.94017 1.21167 1.01849 0.89817 1.01360 1.17112 0.91650 0.87843 1.00036 1.23423 0.88193 0.92806 1.03274 1.74720 1.14938 0.99038 1.23270 1.85573 1.12950 1.31963 1.66614 1.26261 0.89006 0.85318 0.91060 1.17218 0.84340 0.92494 1.24654 1.20586 0.91108 0.97939 0.95130 1.20374 0.95798 0.94438 1.15096 1.20648 0.97499 0.93855 0.98609 1.21069 0.91201 0.99889 1.04212 1.17584 0.93860 0.88929 0.86050 1.20051 0.97619 1.02487 1.25872 0.88449 1.26081 0.97821 0.97786 0.92925 1.69706 1.29311 1.22422 1.18166 0.86099 0.80998 0.79383 0.79682 1.17630 1.19277 1.19443 1.72208 1.12081 1.14654 1.26953 1.21150 0.92518 0.98684 0.99721 0.90649 0.91171 0.90928 0.84589 0.83396 0.87523 0.88300 0.88551 0.85838 0.89999 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.06 -0.70 5.87 -104.69 -0.61 -1.32 16 3 C -0.15 -1.67 9.67 -39.46 -0.38 -2.05 16 4 C 0.10 1.33 7.29 -39.46 -0.29 1.04 16 5 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 6 C -0.12 -1.86 9.68 -39.19 -0.38 -2.24 16 7 C 0.04 0.59 5.88 -104.89 -0.62 -0.02 16 8 C 0.19 3.95 7.79 -156.35 -1.22 2.73 16 9 N -0.41 -8.78 11.84 31.26 0.37 -8.41 16 10 O 0.09 2.00 8.36 16.31 0.14 2.14 16 11 C 0.29 6.77 7.85 -13.93 -0.11 6.66 16 12 C -0.18 -4.28 5.93 -104.34 -0.62 -4.90 16 13 C -0.03 -0.60 9.70 -39.22 -0.38 -0.98 16 14 C -0.24 -4.82 10.03 -39.39 -0.39 -5.21 16 15 C -0.09 -1.80 9.96 -39.97 -0.40 -2.20 16 16 C -0.14 -3.33 8.58 -39.27 -0.34 -3.67 16 17 C 0.14 3.42 5.53 -106.53 -0.59 2.83 16 18 C -0.43 -10.46 8.05 -37.88 -0.30 -10.77 16 19 H 0.10 2.36 5.66 -52.49 -0.30 2.06 16 20 C 0.08 1.72 5.25 -17.30 -0.09 1.63 16 21 N -0.77 -17.85 11.02 55.56 0.61 -17.24 16 22 Si 0.92 17.34 29.57 -169.99 -5.03 12.31 16 23 H -0.25 -4.87 7.11 56.52 0.40 -4.47 16 24 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 25 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 26 N -0.52 -11.50 10.96 -10.25 -0.11 -11.61 16 27 C -0.10 -1.42 9.34 -39.26 -0.37 -1.78 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 2.33 7.87 -52.49 -0.41 1.92 16 33 H 0.11 2.16 7.88 -52.48 -0.41 1.74 16 34 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.12 2.87 6.45 -52.49 -0.34 2.53 16 37 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 38 H 0.14 1.89 7.86 -52.49 -0.41 1.48 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -25.77 339.22 -9.14 -34.91 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.54 Total: 5.38 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -6.73 Total: -20.78 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.87 Total: -37.25 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.14 Total: 2.14 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -25.77 -9.14 -34.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320353277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.847 kcal (2) G-P(sol) polarization free energy of solvation -25.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds