Wall clock time and date at job start Tue Mar 31 2020 13:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38298 * 119.92461 * 2 1 4 4 C 1.38520 * 120.21033 * 179.73067 * 3 2 1 5 5 F 1.35107 * 119.96759 * 180.28210 * 4 3 2 6 6 C 1.38273 * 120.06882 * 0.54683 * 4 3 2 7 7 C 1.39265 * 119.84733 * 359.47649 * 6 4 3 8 8 C 1.48461 * 120.10206 * 180.26965 * 7 6 4 9 9 N 1.30913 * 126.29098 * 180.02562 * 8 7 6 10 10 O 1.21271 * 110.37970 * 180.02562 * 9 8 7 11 11 C 1.34328 * 109.87690 * 359.97438 * 10 9 8 12 12 C 1.47280 * 126.58897 * 180.02562 * 11 10 9 13 13 C 1.39384 * 120.35535 * 176.31750 * 12 11 10 14 14 C 1.38064 * 119.96481 * 179.97438 * 13 12 11 15 15 C 1.38936 * 120.69479 * 0.03048 * 14 13 12 16 16 C 1.36456 * 120.72929 * 359.97438 * 15 14 13 17 17 C 1.40757 * 120.00704 * 359.70602 * 16 15 14 18 18 C 1.40777 * 120.34252 * 180.29601 * 17 16 15 19 19 H 1.08001 * 119.99750 * 212.16559 * 18 17 16 20 20 C 1.40209 * 120.00383 * 32.17188 * 18 17 16 21 21 N 1.30679 * 119.99825 * 9.68323 * 20 18 17 22 22 Si 1.86802 * 120.00419 * 189.68627 * 20 18 17 23 23 H 1.48494 * 109.47060 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46932 * 119.99984 * 22 20 18 25 25 H 1.48496 * 109.46965 * 239.99545 * 22 20 18 26 26 N 1.32219 * 106.82016 * 359.74013 * 11 10 9 27 27 C 1.38006 * 119.92609 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46820 * 269.97520 * 1 2 3 29 29 H 1.09003 * 109.47550 * 29.97340 * 1 2 3 30 30 H 1.08998 * 109.47611 * 149.97855 * 1 2 3 31 31 H 1.08002 * 119.89836 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.07775 * 179.74929 * 6 4 3 33 33 H 1.08004 * 120.01951 * 0.02562 * 13 12 11 34 34 H 1.07998 * 119.65192 * 180.02562 * 14 13 12 35 35 H 1.08002 * 119.63249 * 179.97438 * 15 14 13 36 36 H 1.08001 * 119.99679 * 179.97438 * 16 15 14 37 37 H 0.97003 * 120.00412 * 180.02562 * 21 20 18 38 38 H 1.07998 * 120.03468 * 359.97093 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5821 1.2055 0.0056 5 9 4.2511 2.3793 0.0114 6 6 4.2809 0.0124 -0.0001 7 6 3.5888 -1.1962 -0.0006 8 6 4.3334 -2.4806 -0.0007 9 7 3.8092 -3.6801 -0.0016 10 8 4.6817 -4.5223 -0.0010 11 6 5.8876 -3.9306 -0.0001 12 6 7.1967 -4.6055 0.0003 13 6 8.3729 -3.8615 -0.0761 14 6 9.5957 -4.5025 -0.0745 15 6 9.6702 -5.8877 0.0019 16 6 8.5368 -6.6438 0.0776 17 6 7.2744 -6.0213 0.0851 18 6 6.1008 -6.7941 0.1693 19 1 5.1973 -6.4587 -0.3181 20 6 6.1048 -7.9992 0.8859 21 7 7.1321 -8.3135 1.6300 22 14 4.6417 -9.1556 0.7771 23 1 3.6161 -8.5726 -0.1246 24 1 5.0861 -10.4668 0.2401 25 1 4.0600 -9.3463 2.1300 26 7 5.6736 -2.6259 -0.0061 27 6 2.1955 -1.1961 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6540 2.1323 0.0004 32 1 5.3608 0.0176 0.0001 33 1 8.3277 -2.7840 -0.1356 34 1 10.5038 -3.9210 -0.1335 35 1 10.6359 -6.3714 0.0014 36 1 8.6085 -7.7199 0.1362 37 1 7.1351 -9.1474 2.1256 38 1 1.6548 -2.1310 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320353277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:35 Heat of formation + Delta-G solvation = 42.576833 kcal Electronic energy + Delta-G solvation = -25497.930957 eV Core-core repulsion = 21607.679586 eV Total energy + Delta-G solvation = -3890.251371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.00482 -46.15456 -40.36479 -39.56888 -36.76291 -35.72534 -34.45333 -33.50055 -32.03874 -31.46031 -30.67765 -28.11902 -27.49461 -25.81902 -25.11018 -23.35958 -22.88233 -22.41517 -21.47881 -19.58036 -18.83508 -18.62285 -17.75252 -17.59505 -17.35621 -17.17740 -16.72412 -16.59353 -15.89755 -15.72018 -15.23780 -14.60099 -14.55059 -14.48774 -14.36068 -14.17495 -13.82822 -13.57697 -13.48181 -13.18296 -13.10057 -12.88481 -12.79026 -12.69779 -12.39256 -12.35309 -12.22304 -12.01872 -11.58666 -11.51878 -11.43455 -11.22038 -9.88961 -9.80146 -9.46475 -9.28937 -8.81516 -6.56784 -0.49626 -0.08974 0.01760 0.92117 1.12160 1.37341 1.47787 1.51588 1.66819 2.07106 2.15799 2.45675 2.50184 2.63865 2.94032 3.27036 3.55365 3.71215 3.83184 3.98020 4.06136 4.18461 4.38277 4.42204 4.55089 4.62537 4.70854 4.82808 4.84251 4.90301 4.94384 4.99775 5.03631 5.11538 5.23186 5.24080 5.27363 5.36627 5.49391 5.73322 5.82166 5.90842 6.04463 6.15190 6.48940 6.66982 6.76940 7.28581 8.12767 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.003484 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.351212 B = 8034.841496 C = 9832.984126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.050 4.050 3 C -0.127 4.127 4 C 0.096 3.904 5 F -0.138 7.138 6 C -0.132 4.132 7 C 0.002 3.998 8 C 0.202 3.798 9 N -0.420 5.420 10 O 0.063 5.937 11 C 0.279 3.721 12 C -0.202 4.202 13 C -0.037 4.037 14 C -0.229 4.229 15 C -0.081 4.081 16 C -0.165 4.165 17 C 0.118 3.882 18 C -0.461 4.461 19 H 0.086 0.914 20 C 0.044 3.956 21 N -0.797 5.797 22 Si 0.976 3.024 23 H -0.263 1.263 24 H -0.252 1.252 25 H -0.265 1.265 26 N -0.532 5.532 27 C -0.103 4.103 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.299 0.701 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 10.551 -1.762 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.146 4.146 4 C 0.077 3.923 5 F -0.116 7.116 6 C -0.153 4.153 7 C 0.000 4.000 8 C -0.069 4.069 9 N -0.137 5.137 10 O 0.011 5.989 11 C 0.071 3.929 12 C -0.207 4.207 13 C -0.057 4.057 14 C -0.248 4.248 15 C -0.100 4.100 16 C -0.184 4.184 17 C 0.113 3.887 18 C -0.490 4.490 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.421 5.421 22 Si 0.797 3.203 23 H -0.187 1.187 24 H -0.176 1.176 25 H -0.189 1.189 26 N -0.267 5.267 27 C -0.123 4.123 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.192 0.808 32 H 0.152 0.848 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.110 0.890 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.448 10.670 -1.603 14.342 hybrid contribution 0.231 -0.759 0.168 0.811 sum -9.217 9.911 -1.434 13.610 Atomic orbital electron populations 1.20921 0.86991 1.04743 1.04182 1.19993 0.98471 0.90371 0.96231 1.21486 0.91078 1.00801 1.01248 1.17495 0.90900 0.80220 1.03698 1.91509 1.80957 1.45127 1.94036 1.21074 1.01391 0.90446 1.02376 1.17207 0.92710 0.86498 1.03601 1.24101 0.87871 0.93925 1.00971 1.74679 1.14691 0.99348 1.24994 1.85549 1.13164 1.32717 1.67446 1.26447 0.89193 0.85883 0.91425 1.17524 0.85197 0.92738 1.25288 1.20815 0.91144 0.98479 0.95240 1.20784 0.96511 0.94571 1.12914 1.21011 0.98168 0.94156 0.96636 1.21097 0.91676 0.99808 1.05845 1.17886 0.94674 0.89504 0.86632 1.20151 0.97474 1.03980 1.27377 0.89590 1.26744 1.00198 0.98453 0.92136 1.69713 1.30623 1.23248 1.18516 0.85214 0.77698 0.77906 0.79519 1.18658 1.17562 1.18915 1.72203 1.13167 1.14055 1.27300 1.21280 0.91399 1.00058 0.99546 0.89180 0.88674 0.90563 0.80758 0.84795 0.86571 0.84765 0.85249 0.86626 0.89015 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.05 -0.99 5.87 -19.91 -0.12 -1.11 16 3 C -0.13 -2.41 9.67 22.35 0.22 -2.19 16 4 C 0.10 2.41 7.29 22.35 0.16 2.57 16 5 F -0.14 -3.45 17.27 44.97 0.78 -2.67 16 6 C -0.13 -4.08 9.68 22.53 0.22 -3.86 16 7 C 0.00 0.06 5.88 -20.04 -0.12 -0.06 16 8 C 0.20 8.60 7.79 137.40 1.07 9.67 16 9 N -0.42 -19.04 11.84 -57.38 -0.68 -19.72 16 10 O 0.06 3.11 8.36 68.44 0.57 3.69 16 11 C 0.28 13.65 7.85 87.09 0.68 14.33 16 12 C -0.20 -9.90 5.93 -19.68 -0.12 -10.02 16 13 C -0.04 -1.61 9.70 22.50 0.22 -1.40 16 14 C -0.23 -8.93 10.03 22.40 0.22 -8.71 16 15 C -0.08 -3.26 9.96 22.02 0.22 -3.04 16 16 C -0.17 -7.75 8.58 22.47 0.19 -7.56 16 17 C 0.12 5.97 5.53 -21.10 -0.12 5.85 16 18 C -0.46 -23.49 8.05 23.37 0.19 -23.31 16 19 H 0.09 4.45 5.66 -2.91 -0.02 4.44 16 20 C 0.04 2.06 5.25 85.34 0.45 2.51 16 21 N -0.80 -37.62 11.02 21.87 0.24 -37.38 16 22 Si 0.98 36.26 29.57 68.60 2.03 38.29 16 23 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 24 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 26 N -0.53 -24.39 10.96 -302.02 -3.31 -27.70 16 27 C -0.10 -2.80 9.34 22.48 0.21 -2.59 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.13 4.40 7.87 -2.91 -0.02 4.38 16 33 H 0.12 4.73 7.88 -2.91 -0.02 4.71 16 34 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 35 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.12 5.53 6.45 -2.91 -0.02 5.51 16 37 H 0.30 12.51 8.29 -92.71 -0.77 11.74 16 38 H 0.14 3.70 7.86 -2.91 -0.02 3.68 16 Total: -1.00 -58.73 339.22 5.05 -53.69 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.12 Total: 21.32 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.30 Total: -29.52 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -3.75 Total: -84.79 kcal Atomic # 8 Polarization: 3.11 SS G_CDS: 0.57 Total: 3.69 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -58.73 5.05 -53.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320353277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.264 kcal (2) G-P(sol) polarization free energy of solvation -58.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds