Wall clock time and date at job start Tue Mar 31 2020 14:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99810 * 2 1 4 4 N 1.46505 * 109.46933 * 124.99761 * 3 2 1 5 5 C 1.46505 * 119.99849 * 274.86578 * 4 3 2 6 6 C 1.50701 * 109.46983 * 262.53543 * 5 4 3 7 7 H 1.07999 * 120.00473 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99591 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99892 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99739 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47167 * 60.00094 * 10 8 6 12 12 H 1.48504 * 109.46804 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46940 * 299.99660 * 10 8 6 14 14 C 1.34771 * 119.99901 * 94.87077 * 4 3 2 15 15 O 1.21356 * 120.00178 * 3.77483 * 14 4 3 16 16 C 1.49343 * 119.99655 * 183.77848 * 14 4 3 17 17 O 1.21389 * 119.99991 * 354.72956 * 16 14 4 18 18 N 1.34778 * 119.99868 * 175.01427 * 16 14 4 19 19 C 1.39906 * 119.99855 * 184.82201 * 18 16 14 20 20 C 1.38856 * 120.06006 * 32.87940 * 19 18 16 21 21 C 1.38120 * 119.97000 * 179.74956 * 20 19 18 22 22 C 1.38501 * 120.09312 * 0.52070 * 21 20 19 23 23 F 1.35103 * 119.94125 * 179.76653 * 22 21 20 24 24 C 1.38467 * 120.12216 * 359.75702 * 22 21 20 25 25 C 1.38294 * 120.02433 * 359.96821 * 24 22 21 26 26 F 1.35096 * 120.04896 * 180.02562 * 25 24 22 27 27 H 1.08001 * 120.00317 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.00048 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99679 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47095 * 4.99675 * 3 2 1 31 31 H 1.08991 * 109.47148 * 244.99378 * 3 2 1 32 32 H 1.08999 * 109.47054 * 22.53738 * 5 4 3 33 33 H 1.08997 * 109.46794 * 142.53289 * 5 4 3 34 34 H 0.96995 * 119.99604 * 179.97438 * 9 8 6 35 35 H 0.97003 * 119.99771 * 4.81856 * 18 16 14 36 36 H 1.07995 * 120.01281 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.95074 * 180.25473 * 21 20 19 38 38 H 1.07992 * 119.98874 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5290 1.7649 2.4517 6 6 2.8833 3.2150 2.6582 7 1 3.4030 3.7596 1.8838 8 6 2.5448 3.8463 3.8364 9 7 1.9124 3.1831 4.7796 10 14 2.9846 5.6436 4.0927 11 1 2.3317 6.4674 3.0438 12 1 2.5135 6.0825 5.4308 13 1 4.4578 5.8097 4.0070 14 6 4.2769 0.9583 0.9579 15 8 4.6792 0.6654 -0.1490 16 6 5.2037 0.9047 2.1277 17 8 4.8293 1.2884 3.2168 18 7 6.4578 0.4357 1.9729 19 6 7.2927 0.2907 3.0861 20 6 6.7537 -0.0455 4.3207 21 6 7.5803 -0.1933 5.4174 22 6 8.9453 0.0041 5.2897 23 9 9.7504 -0.1366 6.3655 24 6 9.4862 0.3452 4.0616 25 6 8.6638 0.4888 2.9591 26 9 9.1911 0.8211 1.7605 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4025 -0.9313 32 1 1.4477 1.6425 2.5144 33 1 3.0082 1.1605 3.2218 34 1 1.6746 3.6271 5.6085 35 1 6.7813 0.1987 1.0897 36 1 5.6891 -0.1959 4.4225 37 1 7.1612 -0.4588 6.3766 38 1 10.5507 0.4990 3.9646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340617597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:18 Heat of formation + Delta-G solvation = -103.636696 kcal Electronic energy + Delta-G solvation = -27226.269220 eV Core-core repulsion = 22898.908329 eV Total energy + Delta-G solvation = -4327.360890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.12944 -49.99823 -42.13907 -40.42808 -39.03826 -37.54760 -35.84552 -35.02102 -33.82171 -31.97973 -30.55391 -29.44465 -27.94557 -25.67472 -24.81323 -24.30327 -23.01570 -21.39964 -20.63823 -19.51419 -19.09957 -18.63141 -18.54347 -17.90886 -17.52305 -17.15637 -16.86065 -16.75262 -16.61263 -16.35735 -16.20002 -15.88568 -15.59616 -15.42721 -14.99771 -14.60662 -14.31661 -14.21965 -14.07437 -13.64988 -13.48954 -13.31690 -13.06798 -12.86251 -12.76754 -12.60559 -12.38844 -12.28573 -11.90687 -11.69154 -11.48604 -10.73000 -10.47425 -10.19687 -10.06464 -9.66959 -9.24685 -8.15032 -6.23824 -0.33686 -0.09187 0.47624 1.07274 1.38859 1.40686 1.47252 1.51565 2.05809 2.35577 2.40151 2.58749 2.74867 3.18643 3.20424 3.30042 3.52492 3.80201 4.02399 4.03085 4.14448 4.26717 4.46721 4.60435 4.77146 4.82652 4.83338 4.88692 4.99803 5.02826 5.08772 5.38670 5.45403 5.67094 5.68684 5.75687 5.82633 5.93580 6.10887 6.26919 6.66768 6.79808 6.99503 7.42508 8.92672 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.004525 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.031526 B = 6186.823052 C = 7739.526000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.135 3.865 4 N -0.558 5.558 5 C 0.243 3.757 6 C -0.527 4.527 7 H 0.043 0.957 8 C 0.027 3.973 9 N -0.916 5.916 10 Si 0.946 3.054 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.506 3.494 15 O -0.559 6.559 16 C 0.496 3.504 17 O -0.465 6.465 18 N -0.645 5.645 19 C 0.101 3.899 20 C -0.078 4.078 21 C -0.131 4.131 22 C 0.111 3.889 23 F -0.130 7.130 24 C -0.159 4.159 25 C 0.098 3.902 26 F -0.129 7.129 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.264 0.736 35 H 0.428 0.572 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -8.788 -2.895 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.014 3.986 4 N -0.287 5.287 5 C 0.123 3.877 6 C -0.566 4.566 7 H 0.061 0.939 8 C -0.173 4.173 9 N -0.555 5.555 10 Si 0.772 3.228 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.208 1.208 14 C 0.289 3.711 15 O -0.440 6.440 16 C 0.278 3.722 17 O -0.335 6.335 18 N -0.294 5.294 19 C 0.005 3.995 20 C -0.098 4.098 21 C -0.150 4.150 22 C 0.091 3.909 23 F -0.109 7.109 24 C -0.179 4.179 25 C 0.076 3.924 26 F -0.107 7.107 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.267 0.733 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.929 -8.599 -2.536 12.653 hybrid contribution 0.405 1.019 -0.160 1.108 sum 9.334 -7.580 -2.696 12.323 Atomic orbital electron populations 1.24072 0.95059 1.03241 0.97477 1.23136 0.96787 0.97711 1.02651 1.20777 0.91911 0.96836 0.89125 1.48239 1.07953 1.59326 1.13232 1.19617 0.94813 0.95034 0.78274 1.21374 1.37703 0.96148 1.01358 0.93875 1.25462 0.94919 1.01524 0.95422 1.69992 1.40718 1.37888 1.06920 0.85800 0.78260 0.81076 0.77625 1.19311 1.20475 1.20781 1.19778 0.83738 0.79395 0.88207 1.90655 1.76429 1.51531 1.25384 1.20417 0.83144 0.78735 0.89910 1.90946 1.73872 1.41474 1.27232 1.43003 1.11869 1.63845 1.10661 1.17951 0.88617 1.03475 0.89437 1.20970 1.01470 0.97004 0.90383 1.21287 0.91231 1.01699 1.00817 1.17258 0.88101 1.02227 0.83352 1.91532 1.72833 1.93281 1.53241 1.21021 1.02559 1.04500 0.89782 1.17040 0.89393 1.03826 0.82143 1.91518 1.86483 1.90032 1.42713 0.87798 0.86165 0.87553 0.89424 0.89084 0.96100 0.92496 0.92676 0.73294 0.84015 0.81662 0.80430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 14.32 67.78 0.97 -3.01 16 2 C -0.18 -5.43 9.84 25.64 0.25 -5.18 16 3 C 0.13 4.66 5.89 85.63 0.50 5.17 16 4 N -0.56 -23.23 2.46 -832.23 -2.05 -25.28 16 5 C 0.24 11.89 4.79 85.63 0.41 12.30 16 6 C -0.53 -28.44 8.27 25.60 0.21 -28.23 16 7 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 8 C 0.03 1.47 5.46 84.66 0.46 1.93 16 9 N -0.92 -52.21 13.29 21.45 0.28 -51.92 16 10 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.51 20.54 7.66 87.24 0.67 21.21 16 15 O -0.56 -22.33 15.97 -3.26 -0.05 -22.38 16 16 C 0.50 19.49 7.50 87.24 0.65 20.15 16 17 O -0.47 -21.18 10.00 -3.37 -0.03 -21.21 16 18 N -0.64 -20.53 5.23 -304.61 -1.59 -22.12 16 19 C 0.10 2.95 6.30 38.21 0.24 3.19 16 20 C -0.08 -2.24 8.65 22.39 0.19 -2.05 16 21 C -0.13 -3.07 10.02 22.30 0.22 -2.84 16 22 C 0.11 2.42 7.30 22.39 0.16 2.59 16 23 F -0.13 -2.78 17.26 44.97 0.78 -2.01 16 24 C -0.16 -3.30 10.00 22.34 0.22 -3.08 16 25 C 0.10 2.46 7.31 22.49 0.16 2.62 16 26 F -0.13 -3.25 16.93 44.97 0.76 -2.49 16 27 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 28 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.09 2.99 7.76 -2.39 -0.02 2.97 16 31 H 0.09 3.05 7.24 -2.39 -0.02 3.04 16 32 H 0.02 1.07 8.02 -2.39 -0.02 1.05 16 33 H 0.06 3.03 5.44 -2.39 -0.01 3.01 16 34 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.43 12.09 8.10 -92.71 -0.75 11.34 16 36 H 0.14 4.60 6.37 -2.91 -0.02 4.59 16 37 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -62.55 344.44 5.84 -56.72 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.37 Total: 20.06 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: 5.34 Total: 24.76 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.36 Total: -99.32 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.09 Total: -43.59 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 1.54 Total: -4.49 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -62.55 5.84 -56.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340617597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.918 kcal (2) G-P(sol) polarization free energy of solvation -62.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds