Wall clock time and date at job start Tue Mar 31 2020 14:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99818 * 2 1 4 4 N 1.46494 * 109.47001 * 125.00034 * 3 2 1 5 5 C 1.46500 * 119.99777 * 274.85464 * 4 3 2 6 6 C 1.50701 * 109.47194 * 263.29700 * 5 4 3 7 7 H 1.07994 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99637 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00379 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99690 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47077 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47043 * 119.99877 * 10 8 6 13 13 H 1.48496 * 109.47068 * 240.00168 * 10 8 6 14 14 C 1.34775 * 120.00451 * 94.85721 * 4 3 2 15 15 O 1.21361 * 119.99862 * 354.72105 * 14 4 3 16 16 C 1.49338 * 120.00239 * 174.71237 * 14 4 3 17 17 O 1.21382 * 120.00320 * 0.56504 * 16 14 4 18 18 N 1.34778 * 120.00188 * 180.56474 * 16 14 4 19 19 C 1.39823 * 120.00608 * 185.74477 * 18 16 14 20 20 C 1.38921 * 120.06659 * 23.53191 * 19 18 16 21 21 C 1.38113 * 119.98686 * 179.74833 * 20 19 18 22 22 C 1.38285 * 120.13813 * 0.53296 * 21 20 19 23 23 C 1.38461 * 120.14904 * 359.72594 * 22 21 20 24 24 F 1.35102 * 120.00347 * 179.97438 * 23 22 21 25 25 C 1.38509 * 120.00340 * 0.02562 * 23 22 21 26 26 F 1.35096 * 120.07219 * 179.97438 * 25 23 22 27 27 H 1.08003 * 119.99870 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99861 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99861 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47125 * 4.99275 * 3 2 1 31 31 H 1.09006 * 109.46701 * 244.99901 * 3 2 1 32 32 H 1.08997 * 109.47101 * 23.29948 * 5 4 3 33 33 H 1.09001 * 109.46823 * 143.29590 * 5 4 3 34 34 H 0.96994 * 120.00044 * 179.97438 * 9 8 6 35 35 H 0.97008 * 119.99624 * 6.01624 * 18 16 14 36 36 H 1.07997 * 120.00637 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.93033 * 180.25695 * 21 20 19 38 38 H 1.08004 * 119.92608 * 179.74088 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5291 1.7652 2.4515 6 6 2.8670 3.2203 2.6504 7 1 3.3765 3.7677 1.8712 8 6 2.5257 3.8526 3.8272 9 7 1.9049 3.1861 4.7758 10 14 2.9440 5.6565 4.0735 11 1 3.6353 6.1737 2.8653 12 1 1.6950 6.4281 4.2969 13 1 3.8334 5.8017 5.2536 14 6 4.2769 0.9581 0.9579 15 8 4.6390 0.5088 -0.1098 16 6 5.2533 1.0969 2.0793 17 8 4.8890 1.5368 3.1503 18 7 6.5391 0.7337 1.9022 19 6 7.4255 0.7497 2.9835 20 6 6.9412 0.6529 4.2819 21 6 7.8186 0.6637 5.3485 22 6 9.1786 0.7817 5.1276 23 6 9.6671 0.8840 3.8360 24 9 10.9963 0.9998 3.6236 25 6 8.7929 0.8687 2.7617 26 9 9.2680 0.9689 1.5010 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0894 31 1 2.6213 1.4026 -0.9314 32 1 1.4497 1.6303 2.5191 33 1 3.0186 1.1698 3.2223 34 1 1.6652 3.6309 5.6038 35 1 6.8505 0.4649 1.0237 36 1 5.8792 0.5647 4.4571 37 1 7.4415 0.5841 6.3574 38 1 9.8613 0.7940 5.9644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340619241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:21 Heat of formation + Delta-G solvation = -84.661791 kcal Electronic energy + Delta-G solvation = -27359.598925 eV Core-core repulsion = 23033.060849 eV Total energy + Delta-G solvation = -4326.538077 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.47771 -48.55774 -40.74944 -39.11948 -37.69878 -36.03252 -34.61668 -33.33061 -32.15340 -30.31234 -29.81516 -27.64023 -26.54404 -24.33761 -23.16690 -22.92294 -21.84240 -20.05620 -19.34458 -18.31653 -17.61228 -17.45712 -16.82768 -16.47858 -16.27830 -16.17909 -15.44185 -15.26752 -15.22433 -14.94315 -14.82391 -14.52511 -14.37598 -14.20556 -13.82774 -13.15896 -12.93084 -12.71065 -12.39885 -12.34996 -12.06218 -11.85072 -11.62249 -11.49304 -11.20787 -10.96720 -10.89193 -10.59708 -10.45543 -10.09057 -9.76714 -9.27611 -8.87277 -8.72006 -8.38771 -8.20844 -7.98262 -6.10407 -4.12591 0.84986 0.94269 1.97077 2.32274 2.72622 3.25718 3.33386 3.34574 3.37972 3.73405 3.75676 3.99709 4.32071 4.39045 4.62975 4.69232 4.84090 5.17666 5.21982 5.26772 5.33056 5.40600 5.67926 5.74650 5.89164 6.02847 6.04267 6.17353 6.26254 6.32309 6.50686 6.80359 6.81527 6.93181 7.15575 7.27295 7.36741 7.78123 7.94464 8.08133 8.14410 8.49292 8.87302 9.50532 10.98376 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.004588 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.633007 B = 6101.831304 C = 7780.624854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.140 3.860 4 N -0.553 5.553 5 C 0.229 3.771 6 C -0.516 4.516 7 H 0.054 0.946 8 C 0.071 3.929 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.509 3.491 15 O -0.556 6.556 16 C 0.491 3.509 17 O -0.420 6.420 18 N -0.656 5.656 19 C 0.165 3.835 20 C -0.118 4.118 21 C -0.073 4.073 22 C -0.154 4.154 23 C 0.087 3.913 24 F -0.130 7.130 25 C 0.024 3.976 26 F -0.129 7.129 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.145 0.855 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.802 -7.176 -1.688 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.283 5.283 5 C 0.111 3.889 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.131 4.131 9 N -0.528 5.528 10 Si 0.720 3.280 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.291 3.709 15 O -0.437 6.437 16 C 0.273 3.727 17 O -0.286 6.286 18 N -0.303 5.303 19 C 0.067 3.933 20 C -0.138 4.138 21 C -0.091 4.091 22 C -0.174 4.174 23 C 0.067 3.933 24 F -0.109 7.109 25 C 0.001 3.999 26 F -0.107 7.107 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.185 0.815 37 H 0.163 0.837 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.547 -7.021 -1.357 10.397 hybrid contribution 0.750 1.040 -0.446 1.357 sum 8.297 -5.981 -1.803 10.386 Atomic orbital electron populations 1.23813 0.95717 1.01806 1.00858 1.23282 0.96118 0.98930 0.99591 1.20629 0.92185 0.95479 0.89971 1.48273 1.07022 1.59542 1.13434 1.19965 0.96031 0.96360 0.76581 1.21225 1.38342 0.94360 1.01507 0.92733 1.24779 0.94832 0.98004 0.95526 1.69915 1.40160 1.36284 1.06418 0.86543 0.78081 0.85137 0.78259 1.19946 1.21011 1.20871 1.19608 0.83865 0.80174 0.87287 1.90680 1.78889 1.46760 1.27379 1.20482 0.82434 0.79505 0.90274 1.90955 1.76131 1.35767 1.25763 1.43198 1.09015 1.66272 1.11788 1.17601 0.86637 0.99703 0.89397 1.21653 1.03319 0.99620 0.89247 1.21030 0.91441 0.96745 0.99917 1.21038 0.97016 1.04871 0.94473 1.17325 0.77269 1.05702 0.93051 1.91514 1.30097 1.93588 1.95669 1.17263 0.90772 1.12462 0.79425 1.91493 1.88505 1.94171 1.36573 0.88645 0.88280 0.87586 0.89242 0.89508 0.94611 0.91826 0.92831 0.74073 0.81457 0.83746 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.32 29.01 0.42 -2.02 16 2 C -0.16 -2.42 9.84 -36.03 -0.35 -2.78 16 3 C 0.14 2.39 5.83 -5.20 -0.03 2.36 16 4 N -0.55 -11.18 2.46 -176.99 -0.44 -11.62 16 5 C 0.23 5.39 4.79 -5.19 -0.02 5.36 16 6 C -0.52 -13.42 7.76 -34.44 -0.27 -13.69 16 7 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 9 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 10 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.51 10.09 7.67 -11.64 -0.09 10.01 16 15 O -0.56 -11.07 16.04 5.49 0.09 -10.98 16 16 C 0.49 9.42 7.53 -11.64 -0.09 9.34 16 17 O -0.42 -9.11 9.21 5.47 0.05 -9.06 16 18 N -0.66 -10.64 5.30 -10.25 -0.05 -10.69 16 19 C 0.16 2.52 6.45 -83.66 -0.54 1.98 16 20 C -0.12 -1.73 8.73 -39.37 -0.34 -2.08 16 21 C -0.07 -0.85 10.04 -39.61 -0.40 -1.24 16 22 C -0.15 -1.71 10.02 -39.48 -0.40 -2.10 16 23 C 0.09 1.15 7.30 -39.40 -0.29 0.86 16 24 F -0.13 -1.75 17.18 2.25 0.04 -1.71 16 25 C 0.02 0.35 7.31 -39.18 -0.29 0.06 16 26 F -0.13 -1.93 16.71 2.25 0.04 -1.89 16 27 H 0.10 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 31 H 0.09 1.44 7.36 -51.93 -0.38 1.05 16 32 H 0.04 0.88 8.02 -51.93 -0.42 0.46 16 33 H 0.06 1.60 5.85 -51.93 -0.30 1.30 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.42 6.24 7.91 -40.82 -0.32 5.92 16 36 H 0.17 2.76 5.70 -52.49 -0.30 2.46 16 37 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -29.15 342.90 -5.95 -35.11 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.78 Total: 5.65 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -2.79 Total: 7.86 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.25 Total: -46.21 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.14 Total: -20.04 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.15 -5.95 -35.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340619241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.554 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds