Wall clock time and date at job start Tue Mar 31 2020 14:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99818 * 2 1 4 4 N 1.46494 * 109.47001 * 125.00034 * 3 2 1 5 5 C 1.46500 * 119.99777 * 274.85464 * 4 3 2 6 6 C 1.50701 * 109.47194 * 263.29700 * 5 4 3 7 7 H 1.07994 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99637 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00379 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99690 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47077 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47043 * 119.99877 * 10 8 6 13 13 H 1.48496 * 109.47068 * 240.00168 * 10 8 6 14 14 C 1.34775 * 120.00451 * 94.85721 * 4 3 2 15 15 O 1.21361 * 119.99862 * 354.72105 * 14 4 3 16 16 C 1.49338 * 120.00239 * 174.71237 * 14 4 3 17 17 O 1.21382 * 120.00320 * 0.56504 * 16 14 4 18 18 N 1.34778 * 120.00188 * 180.56474 * 16 14 4 19 19 C 1.39823 * 120.00608 * 185.74477 * 18 16 14 20 20 C 1.38921 * 120.06659 * 23.53191 * 19 18 16 21 21 C 1.38113 * 119.98686 * 179.74833 * 20 19 18 22 22 C 1.38285 * 120.13813 * 0.53296 * 21 20 19 23 23 C 1.38461 * 120.14904 * 359.72594 * 22 21 20 24 24 F 1.35102 * 120.00347 * 179.97438 * 23 22 21 25 25 C 1.38509 * 120.00340 * 0.02562 * 23 22 21 26 26 F 1.35096 * 120.07219 * 179.97438 * 25 23 22 27 27 H 1.08003 * 119.99870 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99861 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99861 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47125 * 4.99275 * 3 2 1 31 31 H 1.09006 * 109.46701 * 244.99901 * 3 2 1 32 32 H 1.08997 * 109.47101 * 23.29948 * 5 4 3 33 33 H 1.09001 * 109.46823 * 143.29590 * 5 4 3 34 34 H 0.96994 * 120.00044 * 179.97438 * 9 8 6 35 35 H 0.97008 * 119.99624 * 6.01624 * 18 16 14 36 36 H 1.07997 * 120.00637 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.93033 * 180.25695 * 21 20 19 38 38 H 1.08004 * 119.92608 * 179.74088 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5291 1.7652 2.4515 6 6 2.8670 3.2203 2.6504 7 1 3.3765 3.7677 1.8712 8 6 2.5257 3.8526 3.8272 9 7 1.9049 3.1861 4.7758 10 14 2.9440 5.6565 4.0735 11 1 3.6353 6.1737 2.8653 12 1 1.6950 6.4281 4.2969 13 1 3.8334 5.8017 5.2536 14 6 4.2769 0.9581 0.9579 15 8 4.6390 0.5088 -0.1098 16 6 5.2533 1.0969 2.0793 17 8 4.8890 1.5368 3.1503 18 7 6.5391 0.7337 1.9022 19 6 7.4255 0.7497 2.9835 20 6 6.9412 0.6529 4.2819 21 6 7.8186 0.6637 5.3485 22 6 9.1786 0.7817 5.1276 23 6 9.6671 0.8840 3.8360 24 9 10.9963 0.9998 3.6236 25 6 8.7929 0.8687 2.7617 26 9 9.2680 0.9689 1.5010 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0894 31 1 2.6213 1.4026 -0.9314 32 1 1.4497 1.6303 2.5191 33 1 3.0186 1.1698 3.2223 34 1 1.6652 3.6309 5.6038 35 1 6.8505 0.4649 1.0237 36 1 5.8792 0.5647 4.4571 37 1 7.4415 0.5841 6.3574 38 1 9.8613 0.7940 5.9644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340619241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:21 Heat of formation + Delta-G solvation = -101.113277 kcal Electronic energy + Delta-G solvation = -27360.312315 eV Core-core repulsion = 23033.060849 eV Total energy + Delta-G solvation = -4327.251466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.57924 -49.66167 -42.19818 -40.47081 -39.04699 -37.56946 -35.91913 -35.01351 -33.82788 -31.37877 -30.97936 -29.44309 -28.00921 -25.77955 -24.81928 -24.09134 -23.15523 -21.36304 -20.64803 -19.55884 -18.94916 -18.72367 -18.58600 -17.83793 -17.67204 -17.45000 -16.78397 -16.71886 -16.66697 -16.18397 -16.07545 -15.94830 -15.75542 -15.37208 -15.20187 -14.67080 -14.32559 -14.14302 -13.94563 -13.66740 -13.52794 -13.08587 -12.98524 -12.87374 -12.79870 -12.61799 -12.37276 -12.28146 -11.91473 -11.72986 -11.63882 -10.66413 -10.46950 -10.14907 -9.83277 -9.70072 -9.35523 -8.13601 -6.21095 -0.29034 -0.13647 0.51439 1.03650 1.38327 1.41633 1.48433 1.50418 2.07605 2.38835 2.42459 2.52665 2.72280 3.20690 3.24785 3.27073 3.58487 3.73545 4.02702 4.14075 4.16380 4.21631 4.45492 4.65336 4.76496 4.82051 4.91920 4.94210 5.03201 5.11792 5.24632 5.35863 5.45055 5.67808 5.72727 5.75900 5.82361 5.91870 6.11005 6.25278 6.61857 6.80723 6.97146 7.44688 8.94775 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.004588 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.633007 B = 6101.831304 C = 7780.624854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.137 3.863 4 N -0.558 5.558 5 C 0.249 3.751 6 C -0.518 4.518 7 H 0.042 0.958 8 C 0.029 3.971 9 N -0.916 5.916 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.282 1.282 14 C 0.506 3.494 15 O -0.558 6.558 16 C 0.493 3.507 17 O -0.451 6.451 18 N -0.645 5.645 19 C 0.141 3.859 20 C -0.131 4.131 21 C -0.062 4.062 22 C -0.131 4.131 23 C 0.082 3.918 24 F -0.130 7.130 25 C 0.015 3.985 26 F -0.135 7.135 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.024 0.976 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.426 0.574 36 H 0.147 0.853 37 H 0.176 0.824 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.560 -7.143 -0.925 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.016 3.984 4 N -0.287 5.287 5 C 0.129 3.871 6 C -0.556 4.556 7 H 0.060 0.940 8 C -0.171 4.171 9 N -0.556 5.556 10 Si 0.772 3.228 11 H -0.202 1.202 12 H -0.201 1.201 13 H -0.208 1.208 14 C 0.288 3.712 15 O -0.439 6.439 16 C 0.275 3.725 17 O -0.321 6.321 18 N -0.292 5.292 19 C 0.045 3.955 20 C -0.151 4.151 21 C -0.080 4.080 22 C -0.150 4.150 23 C 0.061 3.939 24 F -0.109 7.109 25 C -0.007 4.007 26 F -0.114 7.114 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.164 0.836 37 H 0.193 0.807 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.332 -7.003 -0.626 10.902 hybrid contribution 0.572 0.967 -0.686 1.317 sum 8.904 -6.036 -1.312 10.837 Atomic orbital electron populations 1.24071 0.95026 1.03251 0.97494 1.23127 0.96763 0.97759 1.02630 1.20784 0.91934 0.96853 0.88869 1.48238 1.07731 1.59579 1.13189 1.19486 0.94794 0.94951 0.77846 1.21359 1.37672 0.95485 1.01128 0.93952 1.25409 0.94938 1.01343 0.95438 1.69996 1.41191 1.37622 1.06821 0.85714 0.78040 0.81261 0.77830 1.20156 1.20055 1.20789 1.19783 0.83943 0.79973 0.87525 1.90665 1.78891 1.46872 1.27500 1.20389 0.83181 0.79286 0.89598 1.90949 1.76855 1.37700 1.26555 1.43016 1.08252 1.65476 1.12500 1.17721 0.86805 1.01718 0.89303 1.21625 1.02933 1.00578 0.90007 1.21364 0.91312 0.94963 1.00373 1.21440 0.97182 1.01792 0.94560 1.17522 0.77082 1.05794 0.93460 1.91518 1.30048 1.93597 1.95742 1.17390 0.90677 1.12996 0.79677 1.91472 1.88506 1.94295 1.37122 0.86250 0.87683 0.87756 0.89176 0.89267 0.95839 0.93522 0.92684 0.73489 0.83600 0.80672 0.80005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 14.32 67.78 0.97 -3.02 16 2 C -0.18 -5.47 9.84 25.64 0.25 -5.22 16 3 C 0.14 4.71 5.83 85.63 0.50 5.21 16 4 N -0.56 -23.05 2.46 -832.22 -2.05 -25.10 16 5 C 0.25 12.03 4.79 85.63 0.41 12.44 16 6 C -0.52 -27.40 7.76 25.60 0.20 -27.20 16 7 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 8 C 0.03 1.54 5.46 84.66 0.46 2.00 16 9 N -0.92 -51.23 13.29 21.45 0.28 -50.95 16 10 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.51 20.53 7.67 87.23 0.67 21.20 16 15 O -0.56 -22.45 16.04 -3.28 -0.05 -22.51 16 16 C 0.49 19.53 7.53 87.23 0.66 20.19 16 17 O -0.45 -20.30 9.21 -3.35 -0.03 -20.33 16 18 N -0.65 -21.44 5.30 -304.69 -1.61 -23.05 16 19 C 0.14 4.34 6.45 38.22 0.25 4.59 16 20 C -0.13 -3.81 8.73 22.40 0.20 -3.62 16 21 C -0.06 -1.29 10.04 22.25 0.22 -1.06 16 22 C -0.13 -2.45 10.02 22.33 0.22 -2.22 16 23 C 0.08 2.00 7.30 22.39 0.16 2.16 16 24 F -0.13 -3.23 17.18 44.97 0.77 -2.45 16 25 C 0.02 0.44 7.31 22.53 0.16 0.60 16 26 F -0.14 -4.02 16.71 44.97 0.75 -3.27 16 27 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.10 2.49 7.84 -2.91 -0.02 2.46 16 29 H 0.10 3.13 8.06 -2.91 -0.02 3.10 16 30 H 0.09 3.03 7.76 -2.39 -0.02 3.01 16 31 H 0.09 2.97 7.36 -2.38 -0.02 2.95 16 32 H 0.02 1.19 8.02 -2.39 -0.02 1.17 16 33 H 0.05 2.44 5.85 -2.39 -0.01 2.43 16 34 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.43 12.93 7.91 -92.70 -0.73 12.19 16 36 H 0.15 4.98 5.70 -2.91 -0.02 4.96 16 37 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -62.82 342.90 5.82 -57.00 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.39 Total: 19.33 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 5.34 Total: 26.05 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -3.38 Total: -99.10 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.08 Total: -42.83 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.52 Total: -5.72 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.82 5.82 -57.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340619241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.116 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds