Wall clock time and date at job start Tue Mar 31 2020 14:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99715 * 2 1 4 4 N 1.46497 * 109.46953 * 125.00433 * 3 2 1 5 5 C 1.46502 * 120.00019 * 265.59824 * 4 3 2 6 6 C 1.50696 * 109.46890 * 264.81428 * 5 4 3 7 7 H 1.08003 * 120.00518 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99943 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00035 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47367 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.46822 * 120.00035 * 10 8 6 13 13 H 1.48503 * 109.47154 * 239.99618 * 10 8 6 14 14 C 1.34784 * 120.00412 * 85.59777 * 4 3 2 15 15 O 1.21362 * 119.99219 * 354.65701 * 14 4 3 16 16 C 1.49347 * 120.00330 * 174.38358 * 14 4 3 17 17 O 1.21377 * 119.99570 * 354.73465 * 16 14 4 18 18 N 1.34772 * 120.00279 * 174.73343 * 16 14 4 19 19 C 1.39717 * 120.00511 * 185.18662 * 18 16 14 20 20 C 1.38908 * 120.04540 * 323.53054 * 19 18 16 21 21 C 1.38331 * 119.94347 * 179.80980 * 20 19 18 22 22 F 1.35101 * 119.97199 * 180.23079 * 21 20 19 23 23 C 1.38481 * 120.05490 * 0.44436 * 21 20 19 24 24 C 1.38487 * 120.09763 * 359.78593 * 23 21 20 25 25 F 1.35099 * 119.97162 * 179.97438 * 24 23 21 26 26 C 1.38329 * 120.04952 * 0.02562 * 24 23 21 27 27 H 1.07998 * 119.99800 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99950 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99800 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47242 * 5.00298 * 3 2 1 31 31 H 1.08997 * 109.46810 * 244.99904 * 3 2 1 32 32 H 1.08994 * 109.47110 * 24.81280 * 5 4 3 33 33 H 1.09004 * 109.47290 * 144.81559 * 5 4 3 34 34 H 0.96995 * 119.99785 * 180.02562 * 9 8 6 35 35 H 0.97004 * 120.00048 * 5.19203 * 18 16 14 36 36 H 1.07998 * 120.02636 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.95232 * 179.76744 * 23 21 20 38 38 H 1.08006 * 120.02227 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5913 1.9521 2.3961 6 6 3.0763 3.3784 2.4328 7 1 3.6294 3.7825 1.5977 8 6 2.8140 4.1678 3.5324 9 7 2.1409 3.6757 4.5495 10 14 3.4158 5.9356 3.5782 11 1 4.1438 6.2434 2.3211 12 1 2.2541 6.8505 3.7148 13 1 4.3283 6.1180 4.7355 14 6 4.2200 0.7859 1.0087 15 8 4.5190 0.1873 -0.0038 16 6 5.2125 0.9227 2.1162 17 8 4.9504 1.6052 3.0851 18 7 6.3992 0.2884 2.0399 19 6 7.2831 0.3273 3.1212 20 6 7.3925 1.4798 3.8889 21 6 8.2654 1.5146 4.9615 22 9 8.3689 2.6336 5.7114 23 6 9.0366 0.4050 5.2644 24 6 8.9326 -0.7434 4.4975 25 9 9.6865 -1.8243 4.7950 26 6 8.0582 -0.7842 3.4264 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 1.5047 1.9356 2.4793 33 1 3.0279 1.3985 3.2274 34 1 1.9561 4.2311 5.3230 35 1 6.6397 -0.1951 1.2341 36 1 6.7940 2.3466 3.6508 37 1 9.7203 0.4353 6.0999 38 1 7.9777 -1.6799 2.8282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340619416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:24 Heat of formation + Delta-G solvation = -88.367458 kcal Electronic energy + Delta-G solvation = -27188.668758 eV Core-core repulsion = 22861.969992 eV Total energy + Delta-G solvation = -4326.698766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.10803 -48.91929 -40.74115 -39.13602 -37.63556 -35.98470 -34.50896 -33.34395 -32.14401 -30.37435 -29.89329 -27.61698 -26.57303 -24.32141 -23.09871 -22.96454 -21.78507 -20.10062 -19.34963 -18.47134 -17.40615 -16.80072 -16.67840 -16.59253 -16.22891 -16.00755 -15.67439 -15.46756 -15.32012 -15.28087 -14.86886 -14.58876 -14.33656 -14.22842 -13.70788 -13.14512 -12.96080 -12.64622 -12.35100 -12.17794 -12.01915 -11.98417 -11.68486 -11.54788 -11.22041 -10.96491 -10.84846 -10.60328 -10.24600 -10.07967 -9.75117 -9.28931 -8.90972 -8.72617 -8.43709 -8.33533 -7.99163 -6.08261 -4.10630 0.84117 0.94658 1.95600 2.32708 2.73744 3.27372 3.29526 3.36196 3.38185 3.72914 3.77440 4.06275 4.33993 4.40924 4.72041 4.80626 4.83701 5.00543 5.20601 5.25074 5.29045 5.41380 5.73562 5.74165 5.82243 5.94122 6.01890 6.15571 6.16270 6.30133 6.50388 6.80016 6.81024 6.92740 7.16807 7.27111 7.37803 7.79379 7.95629 8.09939 8.16287 8.50245 8.88785 9.52347 11.00749 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.010273 B = 0.004810 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.018047 B = 5819.426159 C = 8020.755837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.143 3.857 4 N -0.553 5.553 5 C 0.231 3.769 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.070 3.930 9 N -0.889 5.889 10 Si 0.891 3.109 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.509 3.491 15 O -0.557 6.557 16 C 0.487 3.513 17 O -0.419 6.419 18 N -0.662 5.662 19 C 0.218 3.782 20 C -0.167 4.167 21 C 0.153 3.847 22 F -0.127 7.127 23 C -0.213 4.213 24 C 0.146 3.854 25 F -0.132 7.132 26 C -0.195 4.195 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.262 0.738 35 H 0.421 0.579 36 H 0.164 0.836 37 H 0.147 0.853 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 -8.489 -3.601 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.179 4.179 3 C 0.020 3.980 4 N -0.283 5.283 5 C 0.112 3.888 6 C -0.553 4.553 7 H 0.074 0.926 8 C -0.132 4.132 9 N -0.528 5.528 10 Si 0.719 3.281 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.291 3.709 15 O -0.438 6.438 16 C 0.268 3.732 17 O -0.284 6.284 18 N -0.311 5.311 19 C 0.122 3.878 20 C -0.188 4.188 21 C 0.133 3.867 22 F -0.105 7.105 23 C -0.234 4.234 24 C 0.126 3.874 25 F -0.110 7.110 26 C -0.217 4.217 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.019 -8.178 -3.203 11.893 hybrid contribution 0.538 0.770 0.071 0.942 sum 8.557 -7.408 -3.132 11.743 Atomic orbital electron populations 1.23816 0.95733 1.01780 1.01090 1.23313 0.96086 0.99103 0.99370 1.20611 0.92121 0.95485 0.89752 1.48282 1.11273 1.52616 1.16102 1.19928 0.96465 0.93808 0.78562 1.21196 1.35742 0.95416 1.02939 0.92637 1.24794 0.94926 0.98351 0.95168 1.69918 1.39746 1.36455 1.06679 0.86550 0.78611 0.84760 0.78140 1.19890 1.21018 1.20818 1.19633 0.83580 0.80840 0.86848 1.90670 1.78892 1.43240 1.31013 1.20552 0.82520 0.81243 0.88874 1.91053 1.75036 1.31774 1.30570 1.43254 1.16285 1.54547 1.17027 1.16977 0.89960 0.91741 0.89171 1.21471 1.00565 1.00183 0.96608 1.17010 0.96204 0.82768 0.90733 1.91553 1.94853 1.49535 1.74554 1.20932 1.05426 0.92611 1.04424 1.16778 0.92098 0.83441 0.95044 1.91522 1.74004 1.52787 1.92710 1.20831 1.01279 0.99249 1.00297 0.88303 0.88676 0.87484 0.88996 0.89921 0.94684 0.92207 0.92808 0.74063 0.81826 0.83556 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 14.32 29.01 0.42 -2.03 16 2 C -0.16 -2.40 9.81 -36.03 -0.35 -2.76 16 3 C 0.14 2.42 5.74 -5.20 -0.03 2.39 16 4 N -0.55 -11.12 2.46 -176.98 -0.44 -11.56 16 5 C 0.23 5.49 4.73 -5.19 -0.02 5.47 16 6 C -0.51 -13.42 7.71 -34.44 -0.27 -13.68 16 7 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 8 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 10 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.51 9.85 7.64 -11.63 -0.09 9.76 16 15 O -0.56 -10.62 16.20 5.49 0.09 -10.53 16 16 C 0.49 9.11 7.53 -11.64 -0.09 9.03 16 17 O -0.42 -9.28 9.65 5.47 0.05 -9.23 16 18 N -0.66 -9.69 5.32 -10.31 -0.05 -9.75 16 19 C 0.22 3.09 6.27 -83.77 -0.53 2.56 16 20 C -0.17 -2.65 8.67 -39.30 -0.34 -2.99 16 21 C 0.15 2.22 7.29 -39.46 -0.29 1.93 16 22 F -0.13 -1.97 17.27 2.25 0.04 -1.93 16 23 C -0.21 -2.60 10.00 -39.40 -0.39 -2.99 16 24 C 0.15 1.74 7.29 -39.46 -0.29 1.45 16 25 F -0.13 -1.52 17.27 2.25 0.04 -1.48 16 26 C -0.19 -2.29 9.95 -39.30 -0.39 -2.68 16 27 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 28 H 0.09 1.08 8.06 -52.48 -0.42 0.65 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 31 H 0.08 1.35 7.64 -51.93 -0.40 0.95 16 32 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 33 H 0.06 1.55 5.94 -51.93 -0.31 1.24 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.42 5.11 8.30 -40.82 -0.34 4.77 16 36 H 0.16 3.03 6.31 -52.49 -0.33 2.70 16 37 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -29.29 344.83 -5.96 -35.24 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.84 Total: 5.06 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -2.76 Total: 7.25 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.25 Total: -45.76 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.14 Total: -19.75 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.29 -5.96 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340619416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.124 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds