Wall clock time and date at job start Tue Mar 31 2020 14:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99715 * 2 1 4 4 N 1.46497 * 109.46953 * 125.00433 * 3 2 1 5 5 C 1.46502 * 120.00019 * 265.59824 * 4 3 2 6 6 C 1.50696 * 109.46890 * 264.81428 * 5 4 3 7 7 H 1.08003 * 120.00518 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99943 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00035 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47367 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.46822 * 120.00035 * 10 8 6 13 13 H 1.48503 * 109.47154 * 239.99618 * 10 8 6 14 14 C 1.34784 * 120.00412 * 85.59777 * 4 3 2 15 15 O 1.21362 * 119.99219 * 354.65701 * 14 4 3 16 16 C 1.49347 * 120.00330 * 174.38358 * 14 4 3 17 17 O 1.21377 * 119.99570 * 354.73465 * 16 14 4 18 18 N 1.34772 * 120.00279 * 174.73343 * 16 14 4 19 19 C 1.39717 * 120.00511 * 185.18662 * 18 16 14 20 20 C 1.38908 * 120.04540 * 323.53054 * 19 18 16 21 21 C 1.38331 * 119.94347 * 179.80980 * 20 19 18 22 22 F 1.35101 * 119.97199 * 180.23079 * 21 20 19 23 23 C 1.38481 * 120.05490 * 0.44436 * 21 20 19 24 24 C 1.38487 * 120.09763 * 359.78593 * 23 21 20 25 25 F 1.35099 * 119.97162 * 179.97438 * 24 23 21 26 26 C 1.38329 * 120.04952 * 0.02562 * 24 23 21 27 27 H 1.07998 * 119.99800 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99950 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99800 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47242 * 5.00298 * 3 2 1 31 31 H 1.08997 * 109.46810 * 244.99904 * 3 2 1 32 32 H 1.08994 * 109.47110 * 24.81280 * 5 4 3 33 33 H 1.09004 * 109.47290 * 144.81559 * 5 4 3 34 34 H 0.96995 * 119.99785 * 180.02562 * 9 8 6 35 35 H 0.97004 * 120.00048 * 5.19203 * 18 16 14 36 36 H 1.07998 * 120.02636 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.95232 * 179.76744 * 23 21 20 38 38 H 1.08006 * 120.02227 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5913 1.9521 2.3961 6 6 3.0763 3.3784 2.4328 7 1 3.6294 3.7825 1.5977 8 6 2.8140 4.1678 3.5324 9 7 2.1409 3.6757 4.5495 10 14 3.4158 5.9356 3.5782 11 1 4.1438 6.2434 2.3211 12 1 2.2541 6.8505 3.7148 13 1 4.3283 6.1180 4.7355 14 6 4.2200 0.7859 1.0087 15 8 4.5190 0.1873 -0.0038 16 6 5.2125 0.9227 2.1162 17 8 4.9504 1.6052 3.0851 18 7 6.3992 0.2884 2.0399 19 6 7.2831 0.3273 3.1212 20 6 7.3925 1.4798 3.8889 21 6 8.2654 1.5146 4.9615 22 9 8.3689 2.6336 5.7114 23 6 9.0366 0.4050 5.2644 24 6 8.9326 -0.7434 4.4975 25 9 9.6865 -1.8243 4.7950 26 6 8.0582 -0.7842 3.4264 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 1.5047 1.9356 2.4793 33 1 3.0279 1.3985 3.2274 34 1 1.9561 4.2311 5.3230 35 1 6.6397 -0.1951 1.2341 36 1 6.7940 2.3466 3.6508 37 1 9.7203 0.4353 6.0999 38 1 7.9777 -1.6799 2.8282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340619416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:23 Heat of formation + Delta-G solvation = -105.203288 kcal Electronic energy + Delta-G solvation = -27189.398815 eV Core-core repulsion = 22861.969992 eV Total energy + Delta-G solvation = -4327.428823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.09645 -50.05758 -42.15708 -40.47565 -39.00306 -37.50062 -35.78341 -35.02721 -33.82826 -31.45596 -31.05420 -29.43283 -28.01937 -25.77348 -24.78637 -24.11107 -23.08556 -21.39090 -20.63495 -19.65843 -18.90840 -18.55318 -18.00693 -17.87236 -17.46728 -17.11568 -16.86953 -16.84600 -16.76479 -16.37329 -16.31167 -16.10659 -15.88010 -15.30666 -15.09435 -14.66133 -14.30936 -14.14628 -13.99947 -13.58585 -13.28494 -13.11798 -13.04816 -12.96325 -12.85140 -12.70663 -12.39756 -12.25804 -11.93141 -11.66516 -11.45180 -10.67540 -10.48512 -10.17070 -9.86063 -9.70330 -9.49348 -8.14906 -6.22148 -0.28043 -0.13645 0.49614 1.08185 1.36774 1.40596 1.48951 1.51925 2.07449 2.34304 2.39874 2.52994 2.86196 3.20001 3.23951 3.35856 3.75939 3.80122 3.90911 4.02545 4.11995 4.18133 4.46928 4.69211 4.74636 4.77239 4.81398 4.90914 4.99659 5.03123 5.08231 5.32636 5.44725 5.68755 5.69404 5.74932 5.84197 6.00125 6.10303 6.28120 6.70005 6.81557 7.01742 7.43795 8.93687 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.010273 B = 0.004810 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.018047 B = 5819.426159 C = 8020.755837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.140 3.860 4 N -0.560 5.560 5 C 0.252 3.748 6 C -0.511 4.511 7 H 0.047 0.953 8 C 0.024 3.976 9 N -0.922 5.922 10 Si 0.945 3.055 11 H -0.270 1.270 12 H -0.274 1.274 13 H -0.287 1.287 14 C 0.508 3.492 15 O -0.552 6.552 16 C 0.488 3.512 17 O -0.461 6.461 18 N -0.642 5.642 19 C 0.203 3.797 20 C -0.185 4.185 21 C 0.137 3.863 22 F -0.138 7.138 23 C -0.195 4.195 24 C 0.152 3.848 25 F -0.123 7.123 26 C -0.172 4.172 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.435 0.565 36 H 0.130 0.870 37 H 0.172 0.828 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.197 -9.898 -4.274 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.019 3.981 4 N -0.290 5.290 5 C 0.132 3.868 6 C -0.550 4.550 7 H 0.065 0.935 8 C -0.175 4.175 9 N -0.562 5.562 10 Si 0.772 3.228 11 H -0.195 1.195 12 H -0.200 1.200 13 H -0.214 1.214 14 C 0.290 3.710 15 O -0.433 6.433 16 C 0.270 3.730 17 O -0.330 6.330 18 N -0.292 5.292 19 C 0.107 3.893 20 C -0.207 4.207 21 C 0.117 3.883 22 F -0.116 7.116 23 C -0.216 4.216 24 C 0.132 3.868 25 F -0.102 7.102 26 C -0.193 4.193 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.275 0.725 36 H 0.148 0.852 37 H 0.190 0.810 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.994 -9.620 -3.929 13.743 hybrid contribution 0.310 1.096 0.244 1.164 sum 9.304 -8.524 -3.685 13.145 Atomic orbital electron populations 1.24073 0.95073 1.03208 0.97760 1.23149 0.96704 0.97907 1.02379 1.20764 0.91891 0.96799 0.88685 1.48220 1.12246 1.52715 1.15801 1.19398 0.95055 0.92667 0.79717 1.21366 1.34725 0.96536 1.02367 0.93463 1.25463 0.95281 1.01753 0.95044 1.70012 1.41240 1.37694 1.07255 0.85701 0.78246 0.81024 0.77841 1.19455 1.19981 1.21372 1.19765 0.83514 0.80634 0.87089 1.90660 1.78780 1.42996 1.30863 1.20531 0.83389 0.81033 0.88075 1.91052 1.76066 1.33957 1.31970 1.43000 1.15022 1.53396 1.17787 1.17006 0.90799 0.92202 0.89258 1.21311 1.01224 1.00065 0.98078 1.17095 0.97052 0.83374 0.90759 1.91521 1.95007 1.50297 1.74795 1.21129 1.04351 0.91521 1.04550 1.16733 0.91875 0.83417 0.94746 1.91557 1.73706 1.52295 1.92596 1.21031 0.99304 0.99077 0.99876 0.87726 0.86310 0.87692 0.89068 0.89453 0.95992 0.94445 0.92863 0.72453 0.85207 0.81046 0.80532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 14.32 67.78 0.97 -3.01 16 2 C -0.18 -5.32 9.81 25.64 0.25 -5.07 16 3 C 0.14 4.71 5.74 85.63 0.49 5.21 16 4 N -0.56 -22.84 2.46 -832.21 -2.05 -24.89 16 5 C 0.25 12.35 4.73 85.63 0.41 12.75 16 6 C -0.51 -27.34 7.71 25.60 0.20 -27.15 16 7 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 8 C 0.02 1.32 5.46 84.65 0.46 1.78 16 9 N -0.92 -53.53 13.29 21.45 0.28 -53.24 16 10 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 14 C 0.51 19.73 7.64 87.24 0.67 20.40 16 15 O -0.55 -20.59 16.20 -3.28 -0.05 -20.64 16 16 C 0.49 18.61 7.53 87.24 0.66 19.27 16 17 O -0.46 -21.34 9.65 -3.33 -0.03 -21.38 16 18 N -0.64 -18.43 5.32 -304.89 -1.62 -20.05 16 19 C 0.20 5.59 6.27 38.20 0.24 5.83 16 20 C -0.19 -6.04 8.67 22.45 0.19 -5.84 16 21 C 0.14 3.96 7.29 22.35 0.16 4.12 16 22 F -0.14 -4.35 17.27 44.97 0.78 -3.57 16 23 C -0.20 -4.33 10.00 22.39 0.22 -4.11 16 24 C 0.15 3.15 7.29 22.35 0.16 3.32 16 25 F -0.12 -2.38 17.27 44.97 0.78 -1.61 16 26 C -0.17 -3.56 9.95 22.45 0.22 -3.34 16 27 H 0.10 2.43 7.84 -2.91 -0.02 2.41 16 28 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.11 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.09 3.02 7.69 -2.39 -0.02 3.01 16 31 H 0.09 2.81 7.64 -2.39 -0.02 2.79 16 32 H 0.02 1.13 8.03 -2.39 -0.02 1.11 16 33 H 0.04 2.03 5.94 -2.38 -0.01 2.02 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.43 9.86 8.30 -92.71 -0.77 9.09 16 36 H 0.13 5.16 6.31 -2.91 -0.02 5.14 16 37 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -64.17 344.83 5.77 -58.40 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.35 Total: 16.54 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 5.31 Total: 24.16 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -3.39 Total: -98.18 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.09 Total: -42.02 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.55 Total: -5.18 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -64.17 5.77 -58.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340619416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.807 kcal (2) G-P(sol) polarization free energy of solvation -64.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds