Wall clock time and date at job start Tue Mar 31 2020 14:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99837 * 2 1 4 4 N 1.46500 * 109.47333 * 125.00167 * 3 2 1 5 5 C 1.46494 * 120.00274 * 274.83333 * 4 3 2 6 6 C 1.50710 * 109.46998 * 263.65975 * 5 4 3 7 7 H 1.08001 * 119.99425 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99971 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99817 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00132 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47088 * 89.99748 * 10 8 6 12 12 H 1.48502 * 109.47262 * 209.99505 * 10 8 6 13 13 H 1.48499 * 109.47166 * 329.99533 * 10 8 6 14 14 C 1.34779 * 119.99805 * 94.82425 * 4 3 2 15 15 O 1.21361 * 120.00423 * 354.63160 * 14 4 3 16 16 C 1.49344 * 119.99893 * 174.62489 * 14 4 3 17 17 O 1.21385 * 120.00102 * 0.21835 * 16 14 4 18 18 N 1.34780 * 120.00278 * 180.22215 * 16 14 4 19 19 C 1.39815 * 119.99746 * 184.87388 * 18 16 14 20 20 C 1.38849 * 120.07385 * 326.41768 * 19 18 16 21 21 C 1.38325 * 119.92674 * 179.77202 * 20 19 18 22 22 F 1.35095 * 119.97135 * 180.25469 * 21 20 19 23 23 C 1.38512 * 120.06224 * 0.51348 * 21 20 19 24 24 C 1.38253 * 120.14703 * 359.73910 * 23 21 20 25 25 C 1.38284 * 120.07544 * 0.02562 * 24 23 21 26 26 F 1.35103 * 120.03574 * 179.97438 * 25 24 23 27 27 H 1.07993 * 120.00082 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99871 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00280 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47683 * 4.99895 * 3 2 1 31 31 H 1.09004 * 109.47401 * 245.00177 * 3 2 1 32 32 H 1.09006 * 109.47184 * 23.65393 * 5 4 3 33 33 H 1.08995 * 109.47503 * 143.65924 * 5 4 3 34 34 H 0.97000 * 119.99950 * 180.02562 * 9 8 6 35 35 H 0.96994 * 119.99388 * 4.59314 * 18 16 14 36 36 H 1.07996 * 120.03890 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.92571 * 179.72326 * 23 21 20 38 38 H 1.08002 * 119.96221 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5295 1.7656 2.4514 6 6 2.8599 3.2231 2.6463 7 1 3.3656 3.7712 1.8651 8 6 2.5167 3.8565 3.8218 9 7 2.8055 5.1283 3.9921 10 14 1.6427 2.9082 5.1731 11 1 2.6483 2.3031 6.0831 12 1 0.7716 3.8324 5.9427 13 1 0.8135 1.8351 4.5680 14 6 4.2768 0.9575 0.9578 15 8 4.6383 0.5062 -0.1092 16 6 5.2538 1.0981 2.0785 17 8 4.8915 1.5460 3.1470 18 7 6.5379 0.7279 1.9037 19 6 7.4286 0.7634 2.9808 20 6 7.2986 1.7400 3.9592 21 6 8.1786 1.7694 5.0261 22 9 8.0498 2.7161 5.9812 23 6 9.1950 0.8324 5.1132 24 6 9.3302 -0.1380 4.1379 25 6 8.4508 -0.1759 3.0714 26 9 8.5840 -1.1243 2.1184 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4027 -0.9314 32 1 1.4508 1.6252 2.5214 33 1 3.0236 1.1748 3.2226 34 1 2.5643 5.5739 4.8192 35 1 6.8430 0.4329 1.0315 36 1 6.5089 2.4733 3.8895 37 1 9.8835 0.8602 5.9449 38 1 10.1240 -0.8669 4.2086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340619693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:27 Heat of formation + Delta-G solvation = -82.807709 kcal Electronic energy + Delta-G solvation = -27508.354788 eV Core-core repulsion = 23181.897111 eV Total energy + Delta-G solvation = -4326.457677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.00127 -48.83077 -40.75065 -39.13925 -37.75088 -36.13101 -34.66729 -33.34112 -32.18293 -30.58496 -29.56752 -28.24015 -26.68675 -24.40146 -23.17046 -22.59768 -21.73231 -20.13588 -19.40260 -18.27306 -17.56476 -17.34516 -17.07977 -16.66752 -16.44435 -15.94080 -15.62125 -15.42784 -15.30877 -15.09645 -14.56261 -14.43537 -14.17844 -13.89792 -13.83068 -13.23442 -13.20959 -12.89682 -12.57775 -12.40725 -12.21757 -12.03709 -11.69141 -11.49026 -11.31921 -11.03989 -10.73797 -10.57680 -10.43930 -10.23184 -9.61023 -9.35272 -8.93930 -8.76887 -8.55233 -8.26108 -8.03977 -6.11572 -4.09621 0.79812 0.96929 1.89151 2.25148 2.70368 3.27683 3.29072 3.33301 3.36794 3.66862 3.83945 4.03301 4.22032 4.38298 4.51306 4.72903 4.84899 5.07153 5.14361 5.22546 5.32756 5.35895 5.68470 5.73667 5.81693 5.95125 5.97049 6.10904 6.17274 6.24850 6.31409 6.72501 6.77207 6.80579 6.85463 7.03782 7.23080 7.50173 7.75757 8.02941 8.35231 8.47864 8.87723 9.48500 11.01408 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.005283 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.226044 B = 5298.549162 C = 7349.548461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.549 5.549 5 C 0.199 3.801 6 C -0.518 4.518 7 H 0.073 0.927 8 C 0.082 3.918 9 N -0.895 5.895 10 Si 0.872 3.128 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.550 6.550 16 C 0.495 3.505 17 O -0.432 6.432 18 N -0.656 5.656 19 C 0.158 3.842 20 C -0.136 4.136 21 C 0.115 3.885 22 F -0.129 7.129 23 C -0.149 4.149 24 C -0.107 4.107 25 C 0.056 3.944 26 F -0.134 7.134 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.423 0.577 36 H 0.174 0.826 37 H 0.144 0.856 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -10.918 -1.908 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.279 5.279 5 C 0.079 3.921 6 C -0.556 4.556 7 H 0.091 0.909 8 C -0.121 4.121 9 N -0.533 5.533 10 Si 0.699 3.301 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.295 3.705 15 O -0.431 6.431 16 C 0.277 3.723 17 O -0.299 6.299 18 N -0.305 5.305 19 C 0.061 3.939 20 C -0.157 4.157 21 C 0.095 3.905 22 F -0.108 7.108 23 C -0.169 4.169 24 C -0.126 4.126 25 C 0.034 3.966 26 F -0.112 7.112 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.261 0.739 36 H 0.191 0.809 37 H 0.162 0.838 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.100 -10.631 -1.569 13.457 hybrid contribution -0.320 -0.456 0.463 0.724 sum 7.781 -11.087 -1.106 13.590 Atomic orbital electron populations 1.23838 0.95728 1.01885 1.00830 1.23314 0.96143 0.99002 0.99609 1.20657 0.92197 0.95478 0.89903 1.47900 1.07244 1.60013 1.12708 1.20334 0.95574 0.97602 0.78620 1.21065 1.39353 0.92173 1.03035 0.90902 1.24710 0.95192 0.94578 0.97629 1.69881 1.47053 1.09938 1.26429 0.86924 0.80102 0.80150 0.82955 1.19741 1.21236 1.19162 1.19590 0.83679 0.79902 0.87338 1.90686 1.78700 1.46319 1.27350 1.20441 0.82466 0.79575 0.89859 1.90932 1.76565 1.36268 1.26111 1.43106 1.08578 1.66602 1.12199 1.17394 0.91198 0.94195 0.91160 1.21476 1.01227 0.99489 0.93468 1.17482 0.96385 0.88827 0.87780 1.91546 1.95387 1.62261 1.61594 1.20942 0.99250 0.95605 1.01080 1.20720 0.99357 0.99881 0.92660 1.17439 0.99663 0.89315 0.90229 1.91497 1.95585 1.61931 1.62228 0.88596 0.88196 0.87499 0.89014 0.89164 0.94920 0.92689 0.92549 0.73906 0.80916 0.83778 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 14.32 29.01 0.42 -1.94 16 2 C -0.16 -2.37 9.84 -36.03 -0.35 -2.72 16 3 C 0.14 2.35 5.83 -5.19 -0.03 2.32 16 4 N -0.55 -10.99 2.46 -176.98 -0.44 -11.42 16 5 C 0.20 4.52 3.85 -5.19 -0.02 4.50 16 6 C -0.52 -13.85 8.34 -34.44 -0.29 -14.13 16 7 H 0.07 2.16 8.06 -52.49 -0.42 1.73 16 8 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 9 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 10 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 14 C 0.51 10.10 7.67 -11.63 -0.09 10.01 16 15 O -0.55 -10.78 16.04 5.49 0.09 -10.69 16 16 C 0.49 9.55 7.58 -11.63 -0.09 9.46 16 17 O -0.43 -9.54 9.45 5.47 0.05 -9.49 16 18 N -0.66 -10.51 5.23 -10.25 -0.05 -10.56 16 19 C 0.16 2.39 6.33 -83.66 -0.53 1.86 16 20 C -0.14 -2.23 8.69 -39.32 -0.34 -2.57 16 21 C 0.12 1.66 7.29 -39.45 -0.29 1.37 16 22 F -0.13 -2.03 17.26 2.25 0.04 -1.99 16 23 C -0.15 -1.62 10.02 -39.47 -0.40 -2.02 16 24 C -0.11 -1.10 10.02 -39.56 -0.40 -1.50 16 25 C 0.06 0.71 7.31 -39.24 -0.29 0.42 16 26 F -0.13 -1.69 16.93 2.25 0.04 -1.66 16 27 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.10 1.22 7.84 -52.49 -0.41 0.80 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.09 1.51 7.76 -51.93 -0.40 1.11 16 31 H 0.09 1.47 7.36 -51.93 -0.38 1.09 16 32 H 0.03 0.73 7.08 -51.93 -0.37 0.36 16 33 H 0.06 1.30 5.27 -51.93 -0.27 1.02 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.42 6.00 8.10 -40.82 -0.33 5.67 16 36 H 0.17 3.40 6.10 -52.49 -0.32 3.08 16 37 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -30.61 340.21 -5.60 -36.21 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.77 Total: 6.67 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -2.79 Total: 7.24 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.28 Total: -47.82 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.14 Total: -20.17 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.65 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.61 -5.60 -36.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340619693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.594 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds