Wall clock time and date at job start Tue Mar 31 2020 14:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99837 * 2 1 4 4 N 1.46500 * 109.47333 * 125.00167 * 3 2 1 5 5 C 1.46494 * 120.00274 * 274.83333 * 4 3 2 6 6 C 1.50710 * 109.46998 * 263.65975 * 5 4 3 7 7 H 1.08001 * 119.99425 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99971 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99817 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00132 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47088 * 89.99748 * 10 8 6 12 12 H 1.48502 * 109.47262 * 209.99505 * 10 8 6 13 13 H 1.48499 * 109.47166 * 329.99533 * 10 8 6 14 14 C 1.34779 * 119.99805 * 94.82425 * 4 3 2 15 15 O 1.21361 * 120.00423 * 354.63160 * 14 4 3 16 16 C 1.49344 * 119.99893 * 174.62489 * 14 4 3 17 17 O 1.21385 * 120.00102 * 0.21835 * 16 14 4 18 18 N 1.34780 * 120.00278 * 180.22215 * 16 14 4 19 19 C 1.39815 * 119.99746 * 184.87388 * 18 16 14 20 20 C 1.38849 * 120.07385 * 326.41768 * 19 18 16 21 21 C 1.38325 * 119.92674 * 179.77202 * 20 19 18 22 22 F 1.35095 * 119.97135 * 180.25469 * 21 20 19 23 23 C 1.38512 * 120.06224 * 0.51348 * 21 20 19 24 24 C 1.38253 * 120.14703 * 359.73910 * 23 21 20 25 25 C 1.38284 * 120.07544 * 0.02562 * 24 23 21 26 26 F 1.35103 * 120.03574 * 179.97438 * 25 24 23 27 27 H 1.07993 * 120.00082 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99871 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00280 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47683 * 4.99895 * 3 2 1 31 31 H 1.09004 * 109.47401 * 245.00177 * 3 2 1 32 32 H 1.09006 * 109.47184 * 23.65393 * 5 4 3 33 33 H 1.08995 * 109.47503 * 143.65924 * 5 4 3 34 34 H 0.97000 * 119.99950 * 180.02562 * 9 8 6 35 35 H 0.96994 * 119.99388 * 4.59314 * 18 16 14 36 36 H 1.07996 * 120.03890 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.92571 * 179.72326 * 23 21 20 38 38 H 1.08002 * 119.96221 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5295 1.7656 2.4514 6 6 2.8599 3.2231 2.6463 7 1 3.3656 3.7712 1.8651 8 6 2.5167 3.8565 3.8218 9 7 2.8055 5.1283 3.9921 10 14 1.6427 2.9082 5.1731 11 1 2.6483 2.3031 6.0831 12 1 0.7716 3.8324 5.9427 13 1 0.8135 1.8351 4.5680 14 6 4.2768 0.9575 0.9578 15 8 4.6383 0.5062 -0.1092 16 6 5.2538 1.0981 2.0785 17 8 4.8915 1.5460 3.1470 18 7 6.5379 0.7279 1.9037 19 6 7.4286 0.7634 2.9808 20 6 7.2986 1.7400 3.9592 21 6 8.1786 1.7694 5.0261 22 9 8.0498 2.7161 5.9812 23 6 9.1950 0.8324 5.1132 24 6 9.3302 -0.1380 4.1379 25 6 8.4508 -0.1759 3.0714 26 9 8.5840 -1.1243 2.1184 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4027 -0.9314 32 1 1.4508 1.6252 2.5214 33 1 3.0236 1.1748 3.2226 34 1 2.5643 5.5739 4.8192 35 1 6.8430 0.4329 1.0315 36 1 6.5089 2.4733 3.8895 37 1 9.8835 0.8602 5.9449 38 1 10.1240 -0.8669 4.2086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340619693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:26 Heat of formation + Delta-G solvation = -102.204174 kcal Electronic energy + Delta-G solvation = -27509.195882 eV Core-core repulsion = 23181.897111 eV Total energy + Delta-G solvation = -4327.298771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.02949 -50.00482 -42.21743 -40.47959 -39.09260 -37.65664 -35.96409 -35.00577 -33.94687 -31.69182 -30.69832 -30.10107 -28.09292 -25.76619 -24.63965 -24.03210 -23.05233 -21.43291 -20.68376 -19.55240 -19.11839 -18.79446 -18.58694 -17.94567 -17.88601 -17.21589 -16.96671 -16.80886 -16.48276 -16.43744 -16.05152 -15.93315 -15.44228 -15.25403 -15.09957 -14.83895 -14.43770 -14.22022 -14.09370 -13.90418 -13.69953 -13.23188 -13.19986 -12.94441 -12.75734 -12.49493 -12.30572 -12.22955 -11.98268 -11.71508 -11.64935 -10.79600 -10.58668 -10.25443 -9.94323 -9.72786 -9.36634 -8.27474 -6.28942 -0.32602 -0.10124 0.41762 1.00909 1.34613 1.39332 1.44494 1.48019 2.02518 2.32858 2.35154 2.42925 2.96289 3.05810 3.10273 3.26755 3.56401 3.89364 3.99563 4.00071 4.10682 4.25244 4.43268 4.62161 4.70181 4.74435 4.86115 4.87546 4.96312 5.00922 5.03918 5.12278 5.29959 5.46752 5.66414 5.70954 5.79445 5.85323 6.03660 6.30314 6.59026 6.67269 6.88306 7.32617 8.89224 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.005283 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.226044 B = 5298.549162 C = 7349.548461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.184 4.184 3 C 0.136 3.864 4 N -0.556 5.556 5 C 0.213 3.787 6 C -0.507 4.507 7 H 0.029 0.971 8 C 0.025 3.975 9 N -0.945 5.945 10 Si 0.933 3.067 11 H -0.278 1.278 12 H -0.282 1.282 13 H -0.237 1.237 14 C 0.509 3.491 15 O -0.550 6.550 16 C 0.493 3.507 17 O -0.469 6.469 18 N -0.644 5.644 19 C 0.134 3.866 20 C -0.159 4.159 21 C 0.096 3.904 22 F -0.143 7.143 23 C -0.121 4.121 24 C -0.084 4.084 25 C 0.064 3.936 26 F -0.130 7.130 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.430 0.570 36 H 0.129 0.871 37 H 0.185 0.815 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.094 -14.030 -1.326 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.015 3.985 4 N -0.285 5.285 5 C 0.091 3.909 6 C -0.546 4.546 7 H 0.047 0.953 8 C -0.173 4.173 9 N -0.586 5.586 10 Si 0.757 3.243 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.161 1.161 14 C 0.292 3.708 15 O -0.430 6.430 16 C 0.275 3.725 17 O -0.339 6.339 18 N -0.293 5.293 19 C 0.038 3.962 20 C -0.180 4.180 21 C 0.076 3.924 22 F -0.122 7.122 23 C -0.141 4.141 24 C -0.103 4.103 25 C 0.042 3.958 26 F -0.109 7.109 27 H 0.139 0.861 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.270 0.730 36 H 0.147 0.853 37 H 0.202 0.798 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.865 -13.779 -1.040 16.417 hybrid contribution -0.416 0.503 0.181 0.678 sum 8.449 -13.276 -0.859 15.760 Atomic orbital electron populations 1.24107 0.94969 1.03392 0.97262 1.23116 0.96749 0.97601 1.02814 1.20826 0.91896 0.97086 0.88679 1.47926 1.07944 1.59959 1.12655 1.19996 0.96029 0.94701 0.80143 1.21179 1.37728 0.94055 1.01619 0.95315 1.25538 0.96297 0.95330 1.00179 1.70032 1.49323 1.11926 1.27288 0.85939 0.79104 0.79495 0.79781 1.20401 1.20785 1.16052 1.19734 0.83795 0.79804 0.87507 1.90669 1.78667 1.46403 1.27299 1.20481 0.83460 0.79292 0.89251 1.90921 1.77411 1.38293 1.27257 1.42935 1.07727 1.65542 1.13052 1.17507 0.92329 0.95430 0.90955 1.21162 1.01502 0.99825 0.95532 1.17755 0.97515 0.89882 0.87205 1.91508 1.95610 1.63090 1.61978 1.21355 0.97582 0.93349 1.01768 1.21234 0.98894 0.99679 0.90465 1.17551 0.98970 0.88454 0.90833 1.91515 1.95469 1.61594 1.62310 0.86077 0.87585 0.87494 0.89088 0.89230 0.93536 0.92970 0.92632 0.72985 0.85328 0.79770 0.78783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 14.32 67.78 0.97 -2.65 16 2 C -0.18 -5.12 9.84 25.64 0.25 -4.87 16 3 C 0.14 4.57 5.83 85.63 0.50 5.07 16 4 N -0.56 -22.61 2.46 -832.20 -2.05 -24.66 16 5 C 0.21 9.77 3.85 85.64 0.33 10.10 16 6 C -0.51 -28.29 8.34 25.60 0.21 -28.08 16 7 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 8 C 0.02 1.41 5.47 84.65 0.46 1.88 16 9 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 10 Si 0.93 43.94 27.47 68.60 1.88 45.83 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 14 C 0.51 20.60 7.67 87.24 0.67 21.27 16 15 O -0.55 -21.73 16.04 -3.28 -0.05 -21.79 16 16 C 0.49 19.90 7.58 87.24 0.66 20.56 16 17 O -0.47 -21.93 9.45 -3.35 -0.03 -21.96 16 18 N -0.64 -21.20 5.23 -304.68 -1.59 -22.80 16 19 C 0.13 4.08 6.33 38.23 0.24 4.33 16 20 C -0.16 -5.48 8.69 22.44 0.19 -5.29 16 21 C 0.10 2.74 7.29 22.36 0.16 2.91 16 22 F -0.14 -4.59 17.26 44.97 0.78 -3.81 16 23 C -0.12 -2.21 10.02 22.34 0.22 -1.98 16 24 C -0.08 -1.35 10.02 22.28 0.22 -1.13 16 25 C 0.06 1.48 7.31 22.49 0.16 1.64 16 26 F -0.13 -2.94 16.93 44.97 0.76 -2.18 16 27 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.11 2.29 7.84 -2.91 -0.02 2.27 16 29 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.09 3.00 7.76 -2.39 -0.02 2.98 16 31 H 0.09 2.96 7.36 -2.38 -0.02 2.94 16 32 H 0.05 2.02 7.08 -2.38 -0.02 2.01 16 33 H 0.05 2.49 5.27 -2.39 -0.01 2.47 16 34 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.43 12.37 8.10 -92.71 -0.75 11.62 16 36 H 0.13 5.62 6.10 -2.91 -0.02 5.61 16 37 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -71.09 340.21 5.59 -65.51 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.32 Total: 20.67 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 5.27 Total: 23.75 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.34 Total: -106.01 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.08 Total: -43.75 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 1.54 Total: -6.00 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -71.09 5.59 -65.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340619693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.699 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds