Wall clock time and date at job start Tue Mar 31 2020 14:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99686 * 2 1 4 4 N 1.46500 * 109.47080 * 124.99639 * 3 2 1 5 5 C 1.46506 * 120.00351 * 274.39899 * 4 3 2 6 6 C 1.50699 * 109.46986 * 265.06689 * 5 4 3 7 7 H 1.07995 * 119.99873 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99827 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99788 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99934 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47012 * 90.00011 * 10 8 6 12 12 H 1.48492 * 109.47015 * 209.99939 * 10 8 6 13 13 H 1.48493 * 109.47277 * 330.00162 * 10 8 6 14 14 C 1.34784 * 119.99751 * 94.39648 * 4 3 2 15 15 O 1.21355 * 119.99902 * 354.59584 * 14 4 3 16 16 C 1.49338 * 119.99540 * 174.59430 * 14 4 3 17 17 O 1.21391 * 120.00480 * 354.42119 * 16 14 4 18 18 N 1.34776 * 119.99663 * 174.42081 * 16 14 4 19 19 C 1.39933 * 120.00302 * 183.33110 * 18 16 14 20 20 C 1.39051 * 120.09625 * 214.04140 * 19 18 16 21 21 F 1.35104 * 120.04553 * 359.70194 * 20 19 18 22 22 C 1.38328 * 119.90711 * 179.97438 * 20 19 18 23 23 C 1.38273 * 120.09140 * 0.02562 * 22 20 19 24 24 C 1.38283 * 120.18840 * 359.95718 * 23 22 20 25 25 C 1.38325 * 120.08885 * 0.04576 * 24 23 22 26 26 F 1.35108 * 120.03933 * 180.02562 * 25 24 23 27 27 H 1.08001 * 120.00226 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00472 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00240 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47456 * 5.00273 * 3 2 1 31 31 H 1.08998 * 109.46988 * 244.99369 * 3 2 1 32 32 H 1.08994 * 109.46556 * 25.06586 * 5 4 3 33 33 H 1.08997 * 109.47006 * 145.06673 * 5 4 3 34 34 H 0.96995 * 119.99842 * 179.97438 * 9 8 6 35 35 H 0.97001 * 120.00046 * 3.33738 * 18 16 14 36 36 H 1.07999 * 119.95169 * 179.97438 * 22 20 19 37 37 H 1.08005 * 119.90545 * 180.02562 * 23 22 20 38 38 H 1.07993 * 119.95286 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5315 1.7748 2.4494 6 6 2.8395 3.2396 2.6236 7 1 3.3307 3.7860 1.8321 8 6 2.4942 3.8823 3.7936 9 7 2.7634 5.1605 3.9458 10 14 1.6440 2.9373 5.1624 11 1 2.6648 2.3592 6.0728 12 1 0.7637 3.8574 5.9262 13 1 0.8278 1.8441 4.5762 14 6 4.2745 0.9493 0.9600 15 8 4.6333 0.4903 -0.1045 16 6 5.2522 1.0903 2.0801 17 8 4.9206 1.6416 3.1095 18 7 6.5027 0.6055 1.9479 19 6 7.3973 0.6750 3.0218 20 6 8.7541 0.8694 2.7875 21 9 9.2122 0.9855 1.5219 22 6 9.6348 0.9381 3.8520 23 6 9.1677 0.8133 5.1474 24 6 7.8192 0.6202 5.3848 25 6 6.9317 0.5503 4.3261 26 9 5.6143 0.3621 4.5592 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4559 1.6177 2.5288 33 1 3.0407 1.2018 3.2243 34 1 2.5202 5.6127 4.7687 35 1 6.7828 0.2083 1.1084 36 1 10.6888 1.0887 3.6709 37 1 9.8580 0.8678 5.9763 38 1 7.4585 0.5236 6.3981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340624494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:30 Heat of formation + Delta-G solvation = -76.923306 kcal Electronic energy + Delta-G solvation = -28039.329508 eV Core-core repulsion = 23713.126997 eV Total energy + Delta-G solvation = -4326.202511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.04072 -48.63762 -40.48493 -39.02204 -37.82035 -36.07412 -34.66576 -33.29124 -32.12401 -30.36299 -29.75764 -28.18250 -26.63073 -24.23929 -23.08966 -22.67603 -21.68303 -20.07684 -19.34475 -18.26718 -17.64406 -17.33193 -16.94070 -16.70602 -16.09451 -15.91157 -15.55500 -15.38514 -15.15305 -15.03713 -14.89083 -14.36338 -14.31657 -14.03946 -13.69243 -13.18954 -12.85383 -12.77502 -12.35116 -12.18025 -12.04507 -11.87610 -11.77445 -11.60914 -11.31440 -10.99792 -10.72759 -10.51030 -10.31098 -10.20109 -9.55242 -9.31034 -8.81707 -8.77714 -8.53255 -8.22985 -7.98764 -6.05352 -4.02269 0.83488 0.95174 2.00563 2.29848 2.76198 3.29500 3.32153 3.36736 3.40344 3.73663 3.76492 3.98743 4.42245 4.43688 4.59519 4.65363 4.85514 5.02793 5.18015 5.28769 5.37046 5.40566 5.67687 5.73003 5.81523 5.94195 6.00602 6.09189 6.15086 6.27650 6.37038 6.71551 6.76472 6.84852 6.88687 7.09880 7.27869 7.56684 7.81768 8.12375 8.43565 8.54969 8.94697 9.55006 11.08120 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.005430 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.959962 B = 5154.837059 C = 6669.337394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.140 3.860 4 N -0.550 5.550 5 C 0.202 3.798 6 C -0.513 4.513 7 H 0.072 0.928 8 C 0.081 3.919 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.516 3.484 15 O -0.553 6.553 16 C 0.479 3.521 17 O -0.413 6.413 18 N -0.656 5.656 19 C 0.092 3.908 20 C 0.098 3.902 21 F -0.129 7.129 22 C -0.147 4.147 23 C -0.083 4.083 24 C -0.145 4.145 25 C 0.127 3.873 26 F -0.105 7.105 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.263 0.737 35 H 0.421 0.579 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -11.756 -0.275 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.280 5.280 5 C 0.081 3.919 6 C -0.551 4.551 7 H 0.090 0.910 8 C -0.121 4.121 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.298 3.702 15 O -0.433 6.433 16 C 0.260 3.740 17 O -0.279 6.279 18 N -0.306 5.306 19 C -0.006 4.006 20 C 0.076 3.924 21 F -0.108 7.108 22 C -0.167 4.167 23 C -0.102 4.102 24 C -0.164 4.164 25 C 0.104 3.896 26 F -0.083 7.083 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.259 0.741 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.869 -11.388 0.000 14.434 hybrid contribution -0.447 -0.417 0.246 0.659 sum 8.422 -11.805 0.246 14.503 Atomic orbital electron populations 1.23832 0.95721 1.01861 1.00935 1.23317 0.96138 0.99012 0.99516 1.20645 0.92199 0.95455 0.89896 1.47885 1.07406 1.59883 1.12794 1.20277 0.95437 0.97479 0.78668 1.21051 1.39560 0.91554 1.02939 0.90975 1.24703 0.95237 0.94576 0.97620 1.69885 1.47504 1.09416 1.26778 0.86915 0.79929 0.80097 0.83151 1.19713 1.21318 1.19181 1.19569 0.83568 0.79687 0.87337 1.90671 1.78687 1.46298 1.27655 1.20455 0.82629 0.81251 0.89664 1.91064 1.75791 1.33673 1.27340 1.43124 1.11557 1.60719 1.15169 1.17681 0.88926 1.05877 0.88147 1.17141 0.90182 1.04965 0.80089 1.91515 1.88911 1.93518 1.36838 1.21001 1.00113 1.04117 0.91426 1.20783 0.94678 0.98427 0.96325 1.21153 0.93178 1.03238 0.98878 1.17281 0.79426 1.01472 0.91390 1.91666 1.30465 1.91245 1.94876 0.88618 0.88198 0.87527 0.89006 0.89228 0.94977 0.92922 0.92683 0.74071 0.83803 0.83947 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 14.32 29.02 0.42 -2.03 16 2 C -0.16 -2.45 9.85 -36.02 -0.35 -2.80 16 3 C 0.14 2.46 5.83 -5.19 -0.03 2.43 16 4 N -0.55 -11.57 2.45 -176.98 -0.43 -12.00 16 5 C 0.20 4.79 3.84 -5.19 -0.02 4.77 16 6 C -0.51 -14.31 8.30 -34.44 -0.29 -14.60 16 7 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 8 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 9 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 10 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.52 10.77 7.68 -11.63 -0.09 10.68 16 15 O -0.55 -11.37 16.05 5.49 0.09 -11.28 16 16 C 0.48 9.94 7.14 -11.64 -0.08 9.86 16 17 O -0.41 -9.86 8.58 5.46 0.05 -9.81 16 18 N -0.66 -11.28 5.23 -10.19 -0.05 -11.34 16 19 C 0.09 1.46 6.29 -83.56 -0.53 0.93 16 20 C 0.10 1.31 7.31 -39.25 -0.29 1.03 16 21 F -0.13 -1.75 16.94 2.25 0.04 -1.71 16 22 C -0.15 -1.52 10.02 -39.54 -0.40 -1.91 16 23 C -0.08 -0.80 10.04 -39.55 -0.40 -1.19 16 24 C -0.15 -1.78 10.02 -39.53 -0.40 -2.17 16 25 C 0.13 2.05 6.69 -39.25 -0.26 1.79 16 26 F -0.10 -2.04 13.41 2.25 0.03 -2.01 16 27 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.10 1.26 7.84 -52.48 -0.41 0.85 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.09 1.58 7.76 -51.93 -0.40 1.18 16 31 H 0.09 1.53 7.37 -51.93 -0.38 1.15 16 32 H 0.03 0.75 7.09 -51.93 -0.37 0.38 16 33 H 0.05 1.31 5.35 -51.93 -0.28 1.03 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.42 6.40 8.12 -40.82 -0.33 6.07 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -33.21 337.81 -5.78 -38.99 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.88 Total: 4.81 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -2.81 Total: 9.01 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.29 Total: -50.06 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.14 Total: -21.09 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.21 -5.78 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340624494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.936 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds