Wall clock time and date at job start Tue Mar 31 2020 14:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99686 * 2 1 4 4 N 1.46500 * 109.47080 * 124.99639 * 3 2 1 5 5 C 1.46506 * 120.00351 * 274.39899 * 4 3 2 6 6 C 1.50699 * 109.46986 * 265.06689 * 5 4 3 7 7 H 1.07995 * 119.99873 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99827 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99788 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99934 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47012 * 90.00011 * 10 8 6 12 12 H 1.48492 * 109.47015 * 209.99939 * 10 8 6 13 13 H 1.48493 * 109.47277 * 330.00162 * 10 8 6 14 14 C 1.34784 * 119.99751 * 94.39648 * 4 3 2 15 15 O 1.21355 * 119.99902 * 354.59584 * 14 4 3 16 16 C 1.49338 * 119.99540 * 174.59430 * 14 4 3 17 17 O 1.21391 * 120.00480 * 354.42119 * 16 14 4 18 18 N 1.34776 * 119.99663 * 174.42081 * 16 14 4 19 19 C 1.39933 * 120.00302 * 183.33110 * 18 16 14 20 20 C 1.39051 * 120.09625 * 214.04140 * 19 18 16 21 21 F 1.35104 * 120.04553 * 359.70194 * 20 19 18 22 22 C 1.38328 * 119.90711 * 179.97438 * 20 19 18 23 23 C 1.38273 * 120.09140 * 0.02562 * 22 20 19 24 24 C 1.38283 * 120.18840 * 359.95718 * 23 22 20 25 25 C 1.38325 * 120.08885 * 0.04576 * 24 23 22 26 26 F 1.35108 * 120.03933 * 180.02562 * 25 24 23 27 27 H 1.08001 * 120.00226 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00472 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00240 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47456 * 5.00273 * 3 2 1 31 31 H 1.08998 * 109.46988 * 244.99369 * 3 2 1 32 32 H 1.08994 * 109.46556 * 25.06586 * 5 4 3 33 33 H 1.08997 * 109.47006 * 145.06673 * 5 4 3 34 34 H 0.96995 * 119.99842 * 179.97438 * 9 8 6 35 35 H 0.97001 * 120.00046 * 3.33738 * 18 16 14 36 36 H 1.07999 * 119.95169 * 179.97438 * 22 20 19 37 37 H 1.08005 * 119.90545 * 180.02562 * 23 22 20 38 38 H 1.07993 * 119.95286 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5315 1.7748 2.4494 6 6 2.8395 3.2396 2.6236 7 1 3.3307 3.7860 1.8321 8 6 2.4942 3.8823 3.7936 9 7 2.7634 5.1605 3.9458 10 14 1.6440 2.9373 5.1624 11 1 2.6648 2.3592 6.0728 12 1 0.7637 3.8574 5.9262 13 1 0.8278 1.8441 4.5762 14 6 4.2745 0.9493 0.9600 15 8 4.6333 0.4903 -0.1045 16 6 5.2522 1.0903 2.0801 17 8 4.9206 1.6416 3.1095 18 7 6.5027 0.6055 1.9479 19 6 7.3973 0.6750 3.0218 20 6 8.7541 0.8694 2.7875 21 9 9.2122 0.9855 1.5219 22 6 9.6348 0.9381 3.8520 23 6 9.1677 0.8133 5.1474 24 6 7.8192 0.6202 5.3848 25 6 6.9317 0.5503 4.3261 26 9 5.6143 0.3621 4.5592 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4559 1.6177 2.5288 33 1 3.0407 1.2018 3.2243 34 1 2.5202 5.6127 4.7687 35 1 6.7828 0.2083 1.1084 36 1 10.6888 1.0887 3.6709 37 1 9.8580 0.8678 5.9763 38 1 7.4585 0.5236 6.3981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340624494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:29 Heat of formation + Delta-G solvation = -98.969865 kcal Electronic energy + Delta-G solvation = -28040.285518 eV Core-core repulsion = 23713.126997 eV Total energy + Delta-G solvation = -4327.158521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.09049 -49.91001 -42.03688 -40.30366 -39.18894 -37.66698 -35.99670 -35.00673 -33.95246 -31.34203 -30.91203 -30.10800 -28.09250 -25.66973 -24.50802 -24.09765 -23.03368 -21.40820 -20.67994 -19.47291 -19.13905 -19.00289 -18.59253 -18.03514 -17.61697 -17.18113 -16.87632 -16.63264 -16.55677 -16.32348 -16.04490 -15.98843 -15.67566 -15.50498 -15.02461 -14.85937 -14.44458 -14.15583 -13.88864 -13.84737 -13.21940 -13.11126 -12.97555 -12.89530 -12.74221 -12.66249 -12.34470 -12.25390 -11.98588 -11.70642 -11.63045 -10.77231 -10.62297 -10.28301 -9.79113 -9.74865 -9.38788 -8.26940 -6.27981 -0.24913 -0.05490 0.45774 1.01353 1.33996 1.39751 1.44552 1.48377 2.06866 2.35799 2.38314 2.44572 2.76060 3.10417 3.22331 3.44360 3.65007 3.78663 3.98589 4.09360 4.18945 4.31915 4.41381 4.60666 4.70737 4.72722 4.85012 4.94265 5.00253 5.04211 5.15304 5.18829 5.29387 5.47195 5.64897 5.73830 5.79461 5.84644 6.02765 6.30232 6.60736 6.67100 6.90393 7.32918 8.90379 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.005430 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.959962 B = 5154.837059 C = 6669.337394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C 0.136 3.864 4 N -0.556 5.556 5 C 0.217 3.783 6 C -0.505 4.505 7 H 0.025 0.975 8 C 0.024 3.976 9 N -0.947 5.947 10 Si 0.935 3.065 11 H -0.277 1.277 12 H -0.280 1.280 13 H -0.240 1.240 14 C 0.511 3.489 15 O -0.553 6.553 16 C 0.476 3.524 17 O -0.453 6.453 18 N -0.645 5.645 19 C 0.055 3.945 20 C 0.090 3.910 21 F -0.133 7.133 22 C -0.131 4.131 23 C -0.059 4.059 24 C -0.145 4.145 25 C 0.089 3.911 26 F -0.133 7.133 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.427 0.573 36 H 0.183 0.817 37 H 0.193 0.807 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.995 -13.482 0.957 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.203 4.203 3 C 0.015 3.985 4 N -0.286 5.286 5 C 0.095 3.905 6 C -0.544 4.544 7 H 0.044 0.956 8 C -0.174 4.174 9 N -0.588 5.588 10 Si 0.759 3.241 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.163 1.163 14 C 0.293 3.707 15 O -0.434 6.434 16 C 0.258 3.742 17 O -0.322 6.322 18 N -0.295 5.295 19 C -0.041 4.041 20 C 0.068 3.932 21 F -0.112 7.112 22 C -0.150 4.150 23 C -0.077 4.077 24 C -0.164 4.164 25 C 0.067 3.933 26 F -0.111 7.111 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.266 0.734 36 H 0.201 0.799 37 H 0.210 0.790 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.746 -13.154 1.186 16.414 hybrid contribution -0.524 0.128 -0.204 0.576 sum 9.222 -13.027 0.982 15.991 Atomic orbital electron populations 1.24109 0.94891 1.03442 0.97146 1.23105 0.96787 0.97515 1.02922 1.20818 0.91871 0.97167 0.88596 1.47924 1.08078 1.59758 1.12803 1.19923 0.95873 0.94555 0.80106 1.21149 1.38205 0.93456 1.01554 0.95639 1.25552 0.96220 0.95367 1.00266 1.70035 1.49614 1.11360 1.27750 0.85897 0.79000 0.79429 0.79749 1.20224 1.20506 1.16316 1.19740 0.83749 0.79637 0.87535 1.90649 1.78683 1.46422 1.27627 1.20506 0.83658 0.81029 0.89048 1.91033 1.76723 1.35948 1.28491 1.42931 1.10801 1.59742 1.15998 1.18027 0.89777 1.08579 0.87740 1.17434 0.89607 1.05278 0.80851 1.91505 1.88748 1.93598 1.37351 1.21532 1.01412 1.01423 0.90602 1.21380 0.93985 0.94871 0.97470 1.21538 0.93910 1.02275 0.98692 1.17853 0.78960 1.03781 0.92727 1.91580 1.32646 1.91850 1.95057 0.85967 0.87545 0.87559 0.89063 0.89393 0.93545 0.93437 0.92602 0.73354 0.79930 0.79026 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.18 -5.40 9.85 25.65 0.25 -5.15 16 3 C 0.14 4.84 5.83 85.63 0.50 5.34 16 4 N -0.56 -23.96 2.45 -832.21 -2.04 -26.00 16 5 C 0.22 10.44 3.84 85.63 0.33 10.77 16 6 C -0.51 -29.26 8.30 25.60 0.21 -29.05 16 7 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 8 C 0.02 1.40 5.47 84.66 0.46 1.86 16 9 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 10 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 14 C 0.51 22.10 7.68 87.23 0.67 22.77 16 15 O -0.55 -23.32 16.05 -3.26 -0.05 -23.37 16 16 C 0.48 20.73 7.14 87.23 0.62 21.35 16 17 O -0.45 -22.69 8.58 -3.37 -0.03 -22.72 16 18 N -0.64 -23.14 5.23 -304.49 -1.59 -24.73 16 19 C 0.06 1.79 6.29 38.24 0.24 2.03 16 20 C 0.09 2.30 7.31 22.49 0.16 2.46 16 21 F -0.13 -3.49 16.94 44.97 0.76 -2.73 16 22 C -0.13 -2.21 10.02 22.30 0.22 -1.98 16 23 C -0.06 -0.88 10.04 22.29 0.22 -0.65 16 24 C -0.15 -3.27 10.02 22.30 0.22 -3.05 16 25 C 0.09 2.91 6.69 22.49 0.15 3.06 16 26 F -0.13 -5.41 13.41 44.97 0.60 -4.81 16 27 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.11 2.41 7.84 -2.91 -0.02 2.38 16 29 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.09 3.18 7.76 -2.39 -0.02 3.16 16 31 H 0.09 3.08 7.37 -2.39 -0.02 3.06 16 32 H 0.05 2.11 7.09 -2.39 -0.02 2.09 16 33 H 0.05 2.40 5.35 -2.39 -0.01 2.38 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.43 13.55 8.12 -92.71 -0.75 12.80 16 36 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -76.90 337.81 5.39 -71.50 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.31 Total: 18.81 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 5.25 Total: 26.96 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -3.33 Total: -110.47 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.08 Total: -46.09 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 1.37 Total: -7.54 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -76.90 5.39 -71.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340624494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.467 kcal (2) G-P(sol) polarization free energy of solvation -76.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds