Wall clock time and date at job start Tue Mar 31 2020 14:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 120.00219 * 2 1 4 4 N 1.46492 * 109.47453 * 124.99792 * 3 2 1 5 5 C 1.46508 * 119.99925 * 274.83613 * 4 3 2 6 6 C 1.50695 * 109.47024 * 263.68097 * 5 4 3 7 7 H 1.07995 * 120.00012 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99975 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00300 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99935 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47325 * 89.99825 * 10 8 6 12 12 H 1.48501 * 109.47001 * 210.00221 * 10 8 6 13 13 H 1.48508 * 109.47088 * 329.99544 * 10 8 6 14 14 C 1.34779 * 120.00144 * 94.83431 * 4 3 2 15 15 O 1.21355 * 119.99652 * 354.62741 * 14 4 3 16 16 C 1.49342 * 119.99898 * 174.62946 * 14 4 3 17 17 O 1.21386 * 120.00171 * 0.29777 * 16 14 4 18 18 N 1.34780 * 119.99800 * 180.30497 * 16 14 4 19 19 C 1.39804 * 119.99835 * 184.82414 * 18 16 14 20 20 C 1.38930 * 120.04202 * 144.57651 * 19 18 16 21 21 C 1.38109 * 119.99585 * 179.97438 * 20 19 18 22 22 C 1.38443 * 120.07071 * 0.02562 * 21 20 19 23 23 F 1.35109 * 119.95783 * 180.27409 * 22 21 20 24 24 C 1.38691 * 120.08624 * 359.97438 * 22 21 20 25 25 F 1.35095 * 119.99593 * 179.97438 * 24 22 21 26 26 C 1.38302 * 120.00054 * 359.97438 * 24 22 21 27 27 H 1.07998 * 119.99896 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00175 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00405 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46565 * 4.99492 * 3 2 1 31 31 H 1.09002 * 109.46770 * 245.00114 * 3 2 1 32 32 H 1.09001 * 109.46841 * 23.68454 * 5 4 3 33 33 H 1.08998 * 109.46816 * 143.67972 * 5 4 3 34 34 H 0.97000 * 120.00442 * 180.02562 * 9 8 6 35 35 H 0.96999 * 120.00126 * 4.81630 * 18 16 14 36 36 H 1.07997 * 120.00131 * 0.03546 * 20 19 18 37 37 H 1.07994 * 119.96269 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.03365 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5293 1.7657 2.4514 6 6 2.8592 3.2232 2.6461 7 1 3.3639 3.7716 1.8646 8 6 2.5157 3.8567 3.8216 9 7 2.8032 5.1287 3.9913 10 14 1.6421 2.9082 5.1730 11 1 2.6478 2.3035 6.0831 12 1 0.7705 3.8323 5.9423 13 1 0.8132 1.8347 4.5680 14 6 4.2768 0.9577 0.9579 15 8 4.6383 0.5064 -0.1091 16 6 5.2537 1.0982 2.0788 17 8 4.8909 1.5445 3.1477 18 7 6.5382 0.7296 1.9033 19 6 7.4291 0.7659 2.9801 20 6 8.4234 -0.1978 3.0930 21 6 9.3034 -0.1606 4.1569 22 6 9.1955 0.8359 5.1118 23 9 10.0610 0.8732 6.1486 24 6 8.2041 1.7995 5.0023 25 9 8.1002 2.7708 5.9355 26 6 7.3219 1.7661 3.9377 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4507 1.6248 2.5214 33 1 3.0237 1.1751 3.2227 34 1 2.5619 5.5744 4.8184 35 1 6.8445 0.4390 1.0301 36 1 8.5089 -0.9753 2.3484 37 1 10.0763 -0.9098 4.2438 38 1 6.5494 2.5159 3.8521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340629395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:32 Heat of formation + Delta-G solvation = -82.654321 kcal Electronic energy + Delta-G solvation = -27300.878816 eV Core-core repulsion = 22974.427790 eV Total energy + Delta-G solvation = -4326.451026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.37245 -48.43968 -40.81634 -39.24116 -37.72879 -36.12313 -34.51525 -33.34409 -32.19137 -30.89984 -29.42363 -28.25061 -26.65424 -24.23464 -23.37428 -22.64167 -21.69663 -20.17024 -19.39814 -18.23009 -17.67677 -17.38118 -17.09102 -16.64153 -16.33190 -16.21179 -15.58602 -15.51272 -15.15387 -14.85932 -14.59933 -14.44528 -14.20655 -13.98379 -13.76922 -13.36094 -13.22860 -12.95990 -12.56335 -12.40950 -12.26837 -12.10435 -11.69494 -11.47869 -11.34100 -11.05078 -10.75694 -10.55874 -10.26844 -10.18580 -9.61708 -9.37292 -9.07851 -8.82558 -8.56641 -8.22204 -8.04358 -6.11952 -4.10170 0.77807 0.97277 1.87265 2.24340 2.71335 3.27073 3.28798 3.33021 3.36937 3.67083 3.77142 3.93408 4.34514 4.38044 4.51382 4.74714 4.82031 5.06781 5.12648 5.22220 5.30392 5.32065 5.66682 5.71608 5.81303 5.87479 5.95431 6.09268 6.14592 6.28691 6.30577 6.70704 6.75567 6.79158 6.85204 7.03283 7.24903 7.49733 7.74960 8.03371 8.34651 8.46924 8.87213 9.48108 11.01007 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.004627 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.021457 B = 6049.484721 C = 7817.135440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.549 5.549 5 C 0.199 3.801 6 C -0.519 4.519 7 H 0.073 0.927 8 C 0.082 3.918 9 N -0.894 5.894 10 Si 0.871 3.129 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.512 3.488 15 O -0.552 6.552 16 C 0.492 3.508 17 O -0.432 6.432 18 N -0.659 5.659 19 C 0.177 3.823 20 C -0.130 4.130 21 C -0.107 4.107 22 C 0.042 3.958 23 F -0.133 7.133 24 C 0.093 3.907 25 F -0.123 7.123 26 C -0.132 4.132 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.422 0.578 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -12.062 -4.086 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.017 3.983 4 N -0.279 5.279 5 C 0.079 3.921 6 C -0.557 4.557 7 H 0.091 0.909 8 C -0.121 4.121 9 N -0.533 5.533 10 Si 0.698 3.302 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.295 3.705 15 O -0.433 6.433 16 C 0.274 3.726 17 O -0.300 6.300 18 N -0.308 5.308 19 C 0.081 3.919 20 C -0.151 4.151 21 C -0.127 4.127 22 C 0.021 3.979 23 F -0.112 7.112 24 C 0.072 3.928 25 F -0.102 7.102 26 C -0.153 4.153 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.260 0.740 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.406 -11.734 -3.657 14.350 hybrid contribution -0.210 -0.229 0.856 0.911 sum 7.195 -11.963 -2.800 14.239 Atomic orbital electron populations 1.23842 0.95745 1.01895 1.00791 1.23311 0.96135 0.98985 0.99648 1.20656 0.92218 0.95476 0.89908 1.47915 1.07303 1.59948 1.12696 1.20332 0.95555 0.97606 0.78602 1.21054 1.39452 0.92166 1.03016 0.90909 1.24711 0.95178 0.94570 0.97636 1.69873 1.47024 1.09925 1.26445 0.86930 0.80104 0.80158 0.82973 1.19738 1.21233 1.19153 1.19626 0.83682 0.79850 0.87378 1.90676 1.78726 1.46484 1.27400 1.20442 0.82693 0.79633 0.89807 1.90952 1.76647 1.36228 1.26138 1.43200 1.08461 1.66907 1.12199 1.17428 0.91199 0.93562 0.89672 1.20823 0.96322 0.98402 0.99533 1.20754 1.00735 0.97932 0.93238 1.17664 0.92182 0.98856 0.89208 1.91507 1.67537 1.96255 1.55878 1.17484 0.97026 0.88392 0.89898 1.91557 1.95466 1.60183 1.62976 1.21453 1.00176 1.00129 0.93511 0.88595 0.88198 0.87504 0.89042 0.89171 0.94968 0.92659 0.92529 0.74034 0.83853 0.83437 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 14.32 29.02 0.42 -1.88 16 2 C -0.16 -2.30 9.84 -36.02 -0.35 -2.65 16 3 C 0.14 2.28 5.83 -5.19 -0.03 2.25 16 4 N -0.55 -10.71 2.46 -176.98 -0.44 -11.14 16 5 C 0.20 4.46 3.85 -5.19 -0.02 4.44 16 6 C -0.52 -13.77 8.34 -34.44 -0.29 -14.06 16 7 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 8 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 9 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 10 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 14 C 0.51 9.65 7.67 -11.64 -0.09 9.56 16 15 O -0.55 -10.23 16.04 5.49 0.09 -10.14 16 16 C 0.49 9.01 7.57 -11.63 -0.09 8.92 16 17 O -0.43 -9.35 9.57 5.47 0.05 -9.29 16 18 N -0.66 -9.33 5.32 -10.29 -0.05 -9.39 16 19 C 0.18 2.43 6.29 -83.73 -0.53 1.90 16 20 C -0.13 -1.33 9.96 -39.37 -0.39 -1.72 16 21 C -0.11 -1.09 10.02 -39.55 -0.40 -1.49 16 22 C 0.04 0.56 7.31 -39.34 -0.29 0.27 16 23 F -0.13 -1.84 17.18 2.25 0.04 -1.80 16 24 C 0.09 1.46 7.30 -39.39 -0.29 1.17 16 25 F -0.12 -2.16 17.18 2.25 0.04 -2.12 16 26 C -0.13 -2.15 8.67 -39.32 -0.34 -2.49 16 27 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 29 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.09 1.48 7.76 -51.92 -0.40 1.08 16 31 H 0.09 1.43 7.36 -51.93 -0.38 1.04 16 32 H 0.03 0.71 7.08 -51.93 -0.37 0.35 16 33 H 0.06 1.29 5.27 -51.93 -0.27 1.01 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.42 4.86 8.30 -40.82 -0.34 4.52 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.17 3.34 6.24 -52.49 -0.33 3.01 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -31.13 340.82 -5.60 -36.73 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.78 Total: 5.06 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -2.78 Total: 6.42 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.28 Total: -46.38 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.14 Total: -19.43 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.13 -5.60 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340629395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.922 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds