Wall clock time and date at job start Tue Mar 31 2020 14:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 120.00219 * 2 1 4 4 N 1.46492 * 109.47453 * 124.99792 * 3 2 1 5 5 C 1.46508 * 119.99925 * 274.83613 * 4 3 2 6 6 C 1.50695 * 109.47024 * 263.68097 * 5 4 3 7 7 H 1.07995 * 120.00012 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99975 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00300 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99935 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47325 * 89.99825 * 10 8 6 12 12 H 1.48501 * 109.47001 * 210.00221 * 10 8 6 13 13 H 1.48508 * 109.47088 * 329.99544 * 10 8 6 14 14 C 1.34779 * 120.00144 * 94.83431 * 4 3 2 15 15 O 1.21355 * 119.99652 * 354.62741 * 14 4 3 16 16 C 1.49342 * 119.99898 * 174.62946 * 14 4 3 17 17 O 1.21386 * 120.00171 * 0.29777 * 16 14 4 18 18 N 1.34780 * 119.99800 * 180.30497 * 16 14 4 19 19 C 1.39804 * 119.99835 * 184.82414 * 18 16 14 20 20 C 1.38930 * 120.04202 * 144.57651 * 19 18 16 21 21 C 1.38109 * 119.99585 * 179.97438 * 20 19 18 22 22 C 1.38443 * 120.07071 * 0.02562 * 21 20 19 23 23 F 1.35109 * 119.95783 * 180.27409 * 22 21 20 24 24 C 1.38691 * 120.08624 * 359.97438 * 22 21 20 25 25 F 1.35095 * 119.99593 * 179.97438 * 24 22 21 26 26 C 1.38302 * 120.00054 * 359.97438 * 24 22 21 27 27 H 1.07998 * 119.99896 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00175 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00405 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46565 * 4.99492 * 3 2 1 31 31 H 1.09002 * 109.46770 * 245.00114 * 3 2 1 32 32 H 1.09001 * 109.46841 * 23.68454 * 5 4 3 33 33 H 1.08998 * 109.46816 * 143.67972 * 5 4 3 34 34 H 0.97000 * 120.00442 * 180.02562 * 9 8 6 35 35 H 0.96999 * 120.00126 * 4.81630 * 18 16 14 36 36 H 1.07997 * 120.00131 * 0.03546 * 20 19 18 37 37 H 1.07994 * 119.96269 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.03365 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5293 1.7657 2.4514 6 6 2.8592 3.2232 2.6461 7 1 3.3639 3.7716 1.8646 8 6 2.5157 3.8567 3.8216 9 7 2.8032 5.1287 3.9913 10 14 1.6421 2.9082 5.1730 11 1 2.6478 2.3035 6.0831 12 1 0.7705 3.8323 5.9423 13 1 0.8132 1.8347 4.5680 14 6 4.2768 0.9577 0.9579 15 8 4.6383 0.5064 -0.1091 16 6 5.2537 1.0982 2.0788 17 8 4.8909 1.5445 3.1477 18 7 6.5382 0.7296 1.9033 19 6 7.4291 0.7659 2.9801 20 6 8.4234 -0.1978 3.0930 21 6 9.3034 -0.1606 4.1569 22 6 9.1955 0.8359 5.1118 23 9 10.0610 0.8732 6.1486 24 6 8.2041 1.7995 5.0023 25 9 8.1002 2.7708 5.9355 26 6 7.3219 1.7661 3.9377 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4507 1.6248 2.5214 33 1 3.0237 1.1751 3.2227 34 1 2.5619 5.5744 4.8184 35 1 6.8445 0.4390 1.0301 36 1 8.5089 -0.9753 2.3484 37 1 10.0763 -0.9098 4.2438 38 1 6.5494 2.5159 3.8521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340629395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:32 Heat of formation + Delta-G solvation = -102.856666 kcal Electronic energy + Delta-G solvation = -27301.754855 eV Core-core repulsion = 22974.427790 eV Total energy + Delta-G solvation = -4327.327066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.54676 -49.62195 -42.19571 -40.53125 -39.06057 -37.58840 -35.75461 -34.98650 -33.92156 -31.95690 -30.57549 -30.08241 -28.00186 -25.61010 -24.61515 -24.22219 -22.98292 -21.41367 -20.63073 -19.46412 -19.10753 -18.87954 -18.69281 -17.91804 -17.75127 -17.39488 -16.99735 -16.83937 -16.49736 -16.07098 -16.04558 -15.89698 -15.58988 -15.26566 -15.03779 -14.83100 -14.43858 -14.32450 -14.13001 -13.80547 -13.69724 -13.37654 -13.18542 -12.88961 -12.73209 -12.49498 -12.29801 -12.20088 -11.97014 -11.69410 -11.40743 -10.79371 -10.56459 -10.24487 -10.06761 -9.69612 -9.29988 -8.27527 -6.28485 -0.33734 -0.07561 0.45308 1.06406 1.33920 1.39021 1.43715 1.53402 2.07108 2.34961 2.37443 2.48744 2.77503 3.10713 3.17483 3.35379 3.56943 3.89029 3.95359 4.02628 4.13917 4.30569 4.45980 4.65088 4.72223 4.77423 4.80717 4.91032 4.92844 5.00503 5.04512 5.19660 5.33446 5.48075 5.68623 5.70290 5.83357 5.97387 6.07601 6.34297 6.68427 6.69056 6.96314 7.33259 8.89131 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.004627 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.021457 B = 6049.484721 C = 7817.135440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.182 4.182 3 C 0.136 3.864 4 N -0.558 5.558 5 C 0.213 3.787 6 C -0.505 4.505 7 H 0.029 0.971 8 C 0.023 3.977 9 N -0.946 5.946 10 Si 0.931 3.069 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.235 1.235 14 C 0.511 3.489 15 O -0.547 6.547 16 C 0.491 3.509 17 O -0.475 6.475 18 N -0.638 5.638 19 C 0.163 3.837 20 C -0.097 4.097 21 C -0.083 4.083 22 C 0.043 3.957 23 F -0.136 7.136 24 C 0.061 3.939 25 F -0.146 7.146 26 C -0.154 4.154 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.436 0.564 36 H 0.193 0.807 37 H 0.196 0.804 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 -16.036 -4.952 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.015 3.985 4 N -0.287 5.287 5 C 0.092 3.908 6 C -0.544 4.544 7 H 0.048 0.952 8 C -0.175 4.175 9 N -0.587 5.587 10 Si 0.756 3.244 11 H -0.207 1.207 12 H -0.210 1.210 13 H -0.158 1.158 14 C 0.293 3.707 15 O -0.428 6.428 16 C 0.272 3.728 17 O -0.346 6.346 18 N -0.288 5.288 19 C 0.068 3.932 20 C -0.117 4.117 21 C -0.102 4.102 22 C 0.022 3.978 23 F -0.114 7.114 24 C 0.041 3.959 25 F -0.124 7.124 26 C -0.175 4.175 27 H 0.139 0.861 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.278 0.722 36 H 0.210 0.790 37 H 0.213 0.787 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.893 -15.749 -4.588 18.204 hybrid contribution -0.229 0.986 0.998 1.421 sum 7.664 -14.763 -3.591 17.017 Atomic orbital electron populations 1.24100 0.95094 1.03300 0.97530 1.23131 0.96674 0.97691 1.02565 1.20810 0.91935 0.96980 0.88775 1.47922 1.08177 1.60143 1.12487 1.19969 0.95951 0.94569 0.80314 1.21199 1.37529 0.94167 1.01463 0.95234 1.25540 0.96382 0.95303 1.00239 1.70027 1.49490 1.11954 1.27254 0.85960 0.79081 0.79558 0.79830 1.20651 1.20967 1.15786 1.19762 0.83669 0.79683 0.87611 1.90664 1.78589 1.46323 1.27195 1.20501 0.83923 0.79277 0.89051 1.90949 1.77645 1.38485 1.27508 1.42985 1.07145 1.65461 1.13187 1.17623 0.92298 0.94213 0.89052 1.21295 0.93380 0.97274 0.99766 1.21287 1.00788 0.96953 0.91159 1.17888 0.91250 0.98828 0.89796 1.91503 1.67395 1.96273 1.56262 1.17752 0.98729 0.89438 0.89997 1.91486 1.95787 1.61364 1.63806 1.21145 1.00104 1.00830 0.95441 0.86118 0.87785 0.87230 0.89401 0.89084 0.93735 0.92850 0.92736 0.72250 0.79024 0.78703 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 14.32 67.78 0.97 -2.58 16 2 C -0.18 -4.80 9.84 25.65 0.25 -4.55 16 3 C 0.14 4.37 5.83 85.64 0.50 4.87 16 4 N -0.56 -21.74 2.46 -832.20 -2.05 -23.79 16 5 C 0.21 9.60 3.85 85.63 0.33 9.92 16 6 C -0.50 -27.90 8.34 25.60 0.21 -27.69 16 7 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 8 C 0.02 1.34 5.47 84.65 0.46 1.80 16 9 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 10 Si 0.93 44.13 27.47 68.60 1.88 46.02 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.23 -9.83 6.54 99.48 0.65 -9.18 16 14 C 0.51 19.15 7.67 87.24 0.67 19.82 16 15 O -0.55 -19.65 16.04 -3.26 -0.05 -19.70 16 16 C 0.49 18.20 7.57 87.23 0.66 18.86 16 17 O -0.48 -21.47 9.57 -3.36 -0.03 -21.50 16 18 N -0.64 -17.43 5.32 -304.81 -1.62 -19.05 16 19 C 0.16 4.27 6.29 38.19 0.24 4.51 16 20 C -0.10 -1.54 9.96 22.40 0.22 -1.32 16 21 C -0.08 -1.31 10.02 22.29 0.22 -1.09 16 22 C 0.04 1.08 7.31 22.43 0.16 1.24 16 23 F -0.14 -3.53 17.18 44.97 0.77 -2.76 16 24 C 0.06 2.00 7.30 22.39 0.16 2.17 16 25 F -0.15 -5.51 17.18 44.97 0.77 -4.74 16 26 C -0.15 -5.29 8.67 22.44 0.19 -5.09 16 27 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.10 2.19 7.84 -2.91 -0.02 2.17 16 29 H 0.11 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.09 2.83 7.76 -2.38 -0.02 2.81 16 31 H 0.09 2.85 7.36 -2.39 -0.02 2.83 16 32 H 0.04 1.91 7.08 -2.39 -0.02 1.89 16 33 H 0.05 2.49 5.27 -2.39 -0.01 2.47 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.86 16 35 H 0.44 9.07 8.30 -92.71 -0.77 8.30 16 36 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.13 5.50 6.24 -2.91 -0.02 5.48 16 Total: -1.00 -73.60 340.82 5.54 -68.06 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.30 Total: 15.53 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 5.27 Total: 20.89 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.37 Total: -101.80 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.08 Total: -41.20 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 1.55 Total: -7.50 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -73.60 5.54 -68.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340629395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.800 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds