Wall clock time and date at job start Tue Mar 31 2020 13:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48493 * 109.47239 * 269.99997 * 3 2 1 5 5 H 1.48497 * 109.47124 * 30.00463 * 3 2 1 6 6 H 1.48502 * 109.46953 * 149.99830 * 3 2 1 7 7 C 1.38950 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00094 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00351 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99658 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00023 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46847 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21583 * 119.99969 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00114 * 180.02562 * 14 13 12 17 17 C 1.39008 * 120.00137 * 180.02562 * 16 14 13 18 18 N 1.29622 * 124.94308 * 180.02562 * 17 16 14 19 19 C 1.32024 * 116.90816 * 180.02562 * 18 17 16 20 20 C 1.50697 * 122.71674 * 179.97438 * 19 18 17 21 21 C 1.53786 * 113.61519 * 165.88911 * 20 19 18 22 22 C 1.54049 * 86.98426 * 140.01979 * 21 20 19 23 23 C 1.53781 * 113.61630 * 263.49859 * 20 19 18 24 24 C 1.33413 * 114.56582 * 0.26957 * 19 18 17 25 25 S 1.70962 * 124.94432 * 0.02562 * 17 16 14 26 26 H 0.97001 * 119.99950 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99552 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.46805 * 60.00345 * 12 10 9 29 29 H 1.08995 * 109.47052 * 299.99767 * 12 10 9 30 30 H 0.97004 * 120.00526 * 0.02562 * 13 12 10 31 31 H 0.97009 * 120.00150 * 0.02562 * 16 14 13 32 32 H 1.09002 * 112.84782 * 34.69501 * 20 19 18 33 33 H 1.08992 * 113.61675 * 254.61723 * 21 20 19 34 34 H 1.09000 * 113.60973 * 25.52011 * 21 20 19 35 35 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 36 36 H 1.08996 * 113.68970 * 89.12734 * 22 21 20 37 37 H 1.08999 * 113.61567 * 334.48200 * 23 20 19 38 38 H 1.09000 * 113.61379 * 105.30323 * 23 20 19 39 39 H 1.08000 * 125.96304 * 179.72603 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5608 -2.3704 0.0000 13 7 6.0491 -3.7516 -0.0006 14 6 7.3742 -3.9979 -0.0013 15 8 8.1643 -3.0738 -0.0008 16 7 7.8235 -5.2686 -0.0023 17 6 9.1902 -5.5226 -0.0025 18 7 9.7260 -6.7029 -0.0039 19 6 11.0450 -6.7603 -0.0033 20 6 11.8035 -8.0624 -0.0042 21 6 13.2946 -7.9065 -0.3468 22 6 13.5716 -8.9583 0.7441 23 6 12.2507 -8.5159 1.3955 24 6 11.6519 -5.5722 0.0046 25 16 10.4090 -4.3237 -0.0007 26 1 -0.4850 0.8401 0.0004 27 1 3.8649 -0.3632 0.0004 28 1 5.9240 -1.8566 0.8900 29 1 5.9241 -1.8566 -0.8900 30 1 5.4188 -4.4890 -0.0013 31 1 7.1932 -6.0060 -0.0031 32 1 11.3033 -8.8433 -0.5771 33 1 13.5489 -8.2409 -1.3525 34 1 13.6952 -6.9199 -0.1137 35 1 14.4517 -8.7391 1.3488 36 1 13.5553 -9.9846 0.3772 37 1 12.3665 -7.6957 2.1039 38 1 11.6619 -9.3412 1.7959 39 1 12.7188 -5.4051 0.0106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351822794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:00 Heat of formation + Delta-G solvation = 12.435240 kcal Electronic energy + Delta-G solvation = -23498.934502 eV Core-core repulsion = 19762.740006 eV Total energy + Delta-G solvation = -3736.194496 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85637 -40.21372 -38.65119 -38.07891 -35.01682 -34.78905 -33.96188 -31.88714 -30.10472 -28.01149 -26.68759 -25.79097 -24.79485 -23.71300 -21.68791 -20.86889 -19.90396 -19.41785 -18.96501 -18.33131 -17.80294 -16.87352 -16.24533 -15.94388 -15.77228 -15.52324 -15.15349 -14.96931 -14.88513 -14.38622 -14.13114 -13.53431 -13.24251 -13.12205 -12.65471 -12.62490 -12.56665 -12.28950 -12.26863 -11.83053 -11.30418 -11.16471 -11.04430 -10.72362 -10.70240 -10.62506 -10.25863 -10.12786 -9.79359 -9.77733 -9.29434 -9.22761 -8.88841 -8.38544 -8.24421 -6.47440 -4.00694 0.72124 1.09082 1.80653 2.13749 2.46638 2.93951 2.99001 3.02298 3.08100 3.45905 3.79374 3.97528 4.19112 4.32633 4.38370 4.42318 4.60282 4.74663 5.04449 5.06809 5.25776 5.38187 5.44908 5.46596 5.50203 5.59328 5.62030 5.65871 5.66282 5.70833 5.83719 6.09921 6.13846 6.22401 6.42302 7.36224 7.52404 7.74658 7.91743 8.12212 8.36555 8.74101 9.21602 9.53444 10.64394 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.002009 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.597728 B =13932.647824 C =14440.972654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.579 6.579 12 C 0.123 3.877 13 N -0.706 5.706 14 C 0.705 3.295 15 O -0.563 6.563 16 N -0.636 5.636 17 C 0.271 3.729 18 N -0.520 5.520 19 C 0.106 3.894 20 C -0.037 4.037 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.330 4.330 25 S 0.248 5.752 26 H 0.277 0.723 27 H 0.375 0.625 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.415 0.585 31 H 0.421 0.579 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.887 -11.074 0.450 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.441 4.441 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.221 3.779 11 O -0.463 6.463 12 C -0.005 4.005 13 N -0.362 5.362 14 C 0.404 3.596 15 O -0.441 6.441 16 N -0.289 5.289 17 C -0.097 4.097 18 N -0.243 5.243 19 C -0.026 4.026 20 C -0.058 4.058 21 C -0.171 4.171 22 C -0.179 4.179 23 C -0.166 4.166 24 C -0.470 4.470 25 S 0.498 5.502 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.253 0.747 31 H 0.260 0.740 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 25.404 -10.061 0.445 27.327 hybrid contribution 0.132 -0.189 0.001 0.230 sum 25.536 -10.249 0.447 27.520 Atomic orbital electron populations 1.69615 1.05742 1.27939 1.47678 1.25078 0.95546 0.98231 0.96984 0.86665 0.79910 0.83698 0.79187 1.19327 1.19917 1.19191 1.19441 0.78847 0.96856 1.48909 0.86022 1.42096 1.07742 1.06071 1.65043 1.19529 0.87816 0.85010 0.85563 1.90553 1.69073 1.30856 1.55858 1.20960 0.93969 0.81649 1.03879 1.44642 1.04142 1.10410 1.77044 1.15661 0.83669 0.81698 0.78586 1.90861 1.54019 1.41736 1.57491 1.41757 1.03390 1.08692 1.75016 1.23098 0.90122 0.93946 1.02574 1.66083 1.11903 1.23075 1.23255 1.19542 0.86826 0.95488 1.00786 1.21110 0.93477 0.92704 0.98535 1.23088 0.94665 0.99917 0.99435 1.22856 0.97855 0.99125 0.98104 1.22926 0.96699 1.01171 0.95762 1.27209 1.05614 0.97112 1.17093 1.85046 0.91950 1.05510 1.67702 0.91281 0.79168 0.89211 0.89208 0.74663 0.74041 0.87846 0.91021 0.89598 0.91210 0.90001 0.89985 0.91125 0.81013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 13.96 55.50 0.77 -23.55 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.39 27.74 -169.99 -4.71 13.67 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.06 6.52 56.52 0.37 -4.69 16 7 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 8 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 9 N -0.57 -12.67 5.09 -10.96 -0.06 -12.73 16 10 C 0.44 8.98 7.85 -10.99 -0.09 8.90 16 11 O -0.58 -13.91 15.24 5.55 0.08 -13.82 16 12 C 0.12 1.93 6.15 -5.19 -0.03 1.90 16 13 N -0.71 -10.14 5.53 -66.42 -0.37 -10.51 16 14 C 0.71 10.00 8.53 -86.92 -0.74 9.25 16 15 O -0.56 -9.04 13.81 5.29 0.07 -8.97 16 16 N -0.64 -7.86 5.41 -17.48 -0.09 -7.96 16 17 C 0.27 3.59 8.19 -87.34 -0.72 2.87 16 18 N -0.52 -6.84 10.58 -11.28 -0.12 -6.96 16 19 C 0.11 1.20 6.16 -84.20 -0.52 0.68 16 20 C -0.04 -0.32 4.27 -90.96 -0.39 -0.71 16 21 C -0.13 -0.87 7.40 -25.77 -0.19 -1.06 16 22 C -0.14 -0.83 8.09 -25.78 -0.21 -1.04 16 23 C -0.13 -0.96 7.63 -25.92 -0.20 -1.16 16 24 C -0.33 -3.40 10.41 29.05 0.30 -3.10 16 25 S 0.25 3.02 20.21 -107.50 -2.17 0.84 16 26 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.37 7.26 5.76 -40.82 -0.24 7.03 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.41 5.83 7.45 -40.82 -0.30 5.52 16 31 H 0.42 4.27 8.84 -40.82 -0.36 3.91 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.52 6.09 -51.93 -0.32 0.20 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.17 1.32 6.39 -52.49 -0.34 0.99 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -31.66 343.95 -8.92 -40.58 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -4.49 Total: 15.06 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -3.02 Total: 9.16 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.14 Total: -61.71 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.67 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.17 Total: 0.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.66 -8.92 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351822794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.012 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds