Wall clock time and date at job start Tue Mar 31 2020 13:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48493 * 109.47239 * 269.99997 * 3 2 1 5 5 H 1.48497 * 109.47124 * 30.00463 * 3 2 1 6 6 H 1.48502 * 109.46953 * 149.99830 * 3 2 1 7 7 C 1.38950 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00094 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00351 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99658 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00023 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46847 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21583 * 119.99969 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00114 * 180.02562 * 14 13 12 17 17 C 1.39008 * 120.00137 * 180.02562 * 16 14 13 18 18 N 1.29622 * 124.94308 * 180.02562 * 17 16 14 19 19 C 1.32024 * 116.90816 * 180.02562 * 18 17 16 20 20 C 1.50697 * 122.71674 * 179.97438 * 19 18 17 21 21 C 1.53786 * 113.61519 * 165.88911 * 20 19 18 22 22 C 1.54049 * 86.98426 * 140.01979 * 21 20 19 23 23 C 1.53781 * 113.61630 * 263.49859 * 20 19 18 24 24 C 1.33413 * 114.56582 * 0.26957 * 19 18 17 25 25 S 1.70962 * 124.94432 * 0.02562 * 17 16 14 26 26 H 0.97001 * 119.99950 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99552 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.46805 * 60.00345 * 12 10 9 29 29 H 1.08995 * 109.47052 * 299.99767 * 12 10 9 30 30 H 0.97004 * 120.00526 * 0.02562 * 13 12 10 31 31 H 0.97009 * 120.00150 * 0.02562 * 16 14 13 32 32 H 1.09002 * 112.84782 * 34.69501 * 20 19 18 33 33 H 1.08992 * 113.61675 * 254.61723 * 21 20 19 34 34 H 1.09000 * 113.60973 * 25.52011 * 21 20 19 35 35 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 36 36 H 1.08996 * 113.68970 * 89.12734 * 22 21 20 37 37 H 1.08999 * 113.61567 * 334.48200 * 23 20 19 38 38 H 1.09000 * 113.61379 * 105.30323 * 23 20 19 39 39 H 1.08000 * 125.96304 * 179.72603 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5608 -2.3704 0.0000 13 7 6.0491 -3.7516 -0.0006 14 6 7.3742 -3.9979 -0.0013 15 8 8.1643 -3.0738 -0.0008 16 7 7.8235 -5.2686 -0.0023 17 6 9.1902 -5.5226 -0.0025 18 7 9.7260 -6.7029 -0.0039 19 6 11.0450 -6.7603 -0.0033 20 6 11.8035 -8.0624 -0.0042 21 6 13.2946 -7.9065 -0.3468 22 6 13.5716 -8.9583 0.7441 23 6 12.2507 -8.5159 1.3955 24 6 11.6519 -5.5722 0.0046 25 16 10.4090 -4.3237 -0.0007 26 1 -0.4850 0.8401 0.0004 27 1 3.8649 -0.3632 0.0004 28 1 5.9240 -1.8566 0.8900 29 1 5.9241 -1.8566 -0.8900 30 1 5.4188 -4.4890 -0.0013 31 1 7.1932 -6.0060 -0.0031 32 1 11.3033 -8.8433 -0.5771 33 1 13.5489 -8.2409 -1.3525 34 1 13.6952 -6.9199 -0.1137 35 1 14.4517 -8.7391 1.3488 36 1 13.5553 -9.9846 0.3772 37 1 12.3665 -7.6957 2.1039 38 1 11.6619 -9.3412 1.7959 39 1 12.7188 -5.4051 0.0106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351822794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:59 Heat of formation + Delta-G solvation = -10.885343 kcal Electronic energy + Delta-G solvation = -23499.945758 eV Core-core repulsion = 19762.740006 eV Total energy + Delta-G solvation = -3737.205752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90815 -41.10997 -40.28331 -38.84456 -36.40048 -35.96814 -35.54689 -33.83844 -31.02780 -29.39363 -27.40506 -26.45912 -26.32046 -24.75525 -22.74951 -21.70472 -21.51534 -20.76059 -20.09245 -19.53650 -18.82744 -17.85704 -17.47462 -17.36104 -16.80103 -16.61259 -16.38214 -16.19356 -15.90100 -15.79007 -15.29970 -14.95321 -14.38031 -14.27477 -14.05174 -13.87375 -13.76684 -13.21581 -13.14992 -12.96418 -12.65563 -12.43984 -12.01563 -11.99737 -11.72505 -11.57676 -11.30819 -11.26778 -11.17412 -10.73209 -10.67708 -10.45588 -10.31287 -10.16779 -9.15729 -8.45264 -6.07756 -0.20271 0.16912 0.84961 1.14662 1.32240 1.35258 1.45468 1.49029 1.78978 2.02358 2.21297 2.60395 2.95275 3.11176 3.42375 3.76340 3.85306 3.95415 4.04524 4.11531 4.33968 4.37271 4.41204 4.51050 4.74727 4.86841 4.90544 4.93767 5.01928 5.12018 5.14363 5.22507 5.28672 5.41396 5.49911 5.61695 5.88027 6.46475 6.48053 6.78324 6.80774 7.01037 7.28802 7.77682 8.71005 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.002009 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.597728 B =13932.647824 C =14440.972654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.575 5.575 10 C 0.444 3.556 11 O -0.616 6.616 12 C 0.136 3.864 13 N -0.707 5.707 14 C 0.711 3.289 15 O -0.580 6.580 16 N -0.629 5.629 17 C 0.248 3.752 18 N -0.533 5.533 19 C 0.088 3.912 20 C -0.046 4.046 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.312 4.312 25 S 0.237 5.763 26 H 0.281 0.719 27 H 0.393 0.607 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.429 0.571 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.651 -10.128 0.479 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.215 5.215 10 C 0.231 3.769 11 O -0.502 6.502 12 C 0.009 3.991 13 N -0.364 5.364 14 C 0.409 3.591 15 O -0.459 6.459 16 N -0.282 5.282 17 C -0.119 4.119 18 N -0.257 5.257 19 C -0.043 4.043 20 C -0.067 4.067 21 C -0.165 4.165 22 C -0.169 4.169 23 C -0.168 4.168 24 C -0.452 4.452 25 S 0.486 5.514 26 H 0.091 0.909 27 H 0.229 0.771 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.254 0.746 31 H 0.269 0.731 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 29.205 -9.159 0.476 30.612 hybrid contribution -1.002 -0.688 -0.008 1.216 sum 28.203 -9.848 0.468 29.877 Atomic orbital electron populations 1.69784 1.08123 1.29476 1.49183 1.26090 0.96421 1.02690 0.95662 0.85439 0.79680 0.76891 0.80076 1.18098 1.20070 1.15210 1.19018 0.81010 0.95229 1.50832 0.91910 1.41885 1.06065 1.07459 1.66117 1.20474 0.90028 0.83887 0.82482 1.90546 1.70794 1.32343 1.56476 1.20874 0.89353 0.82774 1.06114 1.44568 1.04382 1.10001 1.77444 1.15558 0.83173 0.82007 0.78331 1.90855 1.54332 1.42450 1.58255 1.41586 1.03561 1.08397 1.74638 1.23276 0.90387 0.94372 1.03905 1.66109 1.13095 1.23335 1.23171 1.20015 0.86375 0.96935 1.01006 1.21276 0.94493 0.91466 0.99496 1.23104 0.92627 1.00610 1.00157 1.22830 0.97175 0.99390 0.97539 1.22940 0.97791 1.00956 0.95109 1.27472 1.06479 0.95917 1.15354 1.85002 0.92485 1.06222 1.67660 0.90944 0.77074 0.86897 0.86817 0.74579 0.73095 0.88405 0.90254 0.88848 0.90072 0.89212 0.90438 0.91461 0.78270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.58 13.96 21.66 0.30 -53.28 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 3 Si 0.96 36.82 27.74 68.60 1.90 38.73 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 7 C -0.33 -18.31 10.16 84.04 0.85 -17.45 16 8 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 9 N -0.58 -25.07 5.09 -306.99 -1.56 -26.64 16 10 C 0.44 18.06 7.85 87.66 0.69 18.75 16 11 O -0.62 -30.22 15.24 -3.07 -0.05 -30.26 16 12 C 0.14 3.93 6.15 85.63 0.53 4.46 16 13 N -0.71 -19.29 5.53 -482.31 -2.67 -21.96 16 14 C 0.71 19.10 8.53 179.05 1.53 20.62 16 15 O -0.58 -17.49 13.81 -3.98 -0.05 -17.55 16 16 N -0.63 -15.04 5.41 -327.47 -1.77 -16.81 16 17 C 0.25 6.36 8.19 179.20 1.47 7.83 16 18 N -0.53 -13.64 10.58 -189.59 -2.01 -15.65 16 19 C 0.09 1.87 6.16 41.44 0.26 2.12 16 20 C -0.05 -0.73 4.27 -11.01 -0.05 -0.78 16 21 C -0.13 -1.33 7.40 31.21 0.23 -1.09 16 22 C -0.13 -1.21 8.09 31.21 0.25 -0.95 16 23 C -0.13 -1.75 7.63 31.12 0.24 -1.51 16 24 C -0.31 -5.79 10.41 66.73 0.69 -5.09 16 25 S 0.24 5.42 20.21 -56.49 -1.14 4.28 16 26 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.39 14.14 5.76 -92.70 -0.53 13.61 16 28 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.42 11.43 7.45 -92.71 -0.69 10.74 16 31 H 0.43 8.52 8.84 -92.70 -0.82 7.70 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.82 6.09 -2.39 -0.01 0.81 16 35 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.20 2.44 6.39 -2.91 -0.02 2.42 16 Total: -1.00 -71.97 343.95 -0.85 -72.82 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.96 Total: 39.41 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 7.16 Total: 26.90 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -7.71 Total: -134.33 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.10 Total: -47.81 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 1.90 Total: 38.73 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.14 Total: 4.28 kcal Total: -71.97 -0.85 -72.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351822794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.939 kcal (2) G-P(sol) polarization free energy of solvation -71.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds