Wall clock time and date at job start Tue Mar 31 2020 13:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38703 * 119.78356 * 2 1 4 4 C 1.37690 * 120.49652 * 179.97438 * 3 2 1 5 5 C 1.39714 * 119.78014 * 0.02562 * 4 3 2 6 6 N 1.35874 * 133.38128 * 179.97438 * 5 4 3 7 7 C 1.31055 * 109.62825 * 180.02562 * 6 5 4 8 8 S 1.76197 * 125.08130 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99797 * 0.02752 * 8 7 6 10 10 C 1.50699 * 109.46926 * 180.02562 * 9 8 7 11 11 C 1.38636 * 119.75289 * 89.99601 * 10 9 8 12 12 C 1.37615 * 120.25185 * 179.70401 * 11 10 9 13 13 C 1.40720 * 119.74367 * 0.27407 * 12 11 10 14 14 C 1.41400 * 120.24537 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99966 * 204.38968 * 14 13 12 16 16 C 1.39950 * 119.99539 * 24.39535 * 14 13 12 17 17 N 1.30819 * 120.00082 * 17.85436 * 16 14 13 18 18 Si 1.86800 * 119.99528 * 197.85557 * 16 14 13 19 19 H 1.48492 * 109.47384 * 59.99611 * 18 16 14 20 20 H 1.48500 * 109.46729 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46863 * 299.99545 * 18 16 14 22 22 C 1.40718 * 119.51008 * 0.02562 * 13 12 11 23 23 C 1.37614 * 119.74514 * 359.97438 * 22 13 12 24 24 N 1.36637 * 109.83758 * 0.22928 * 7 6 5 25 25 H 0.97000 * 126.38375 * 179.73410 * 24 7 6 26 26 C 1.38543 * 107.23424 * 359.62942 * 24 7 6 27 27 C 1.37976 * 119.78651 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46769 * 269.96815 * 1 2 3 29 29 H 1.08991 * 109.47258 * 29.97530 * 1 2 3 30 30 H 1.09005 * 109.46896 * 149.97844 * 1 2 3 31 31 H 1.07996 * 119.74861 * 0.02647 * 3 2 1 32 32 H 1.08006 * 120.10713 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47157 * 59.99891 * 9 8 7 34 34 H 1.09000 * 109.47272 * 299.99379 * 9 8 7 35 35 H 1.08001 * 119.87542 * 359.97438 * 11 10 9 36 36 H 1.08000 * 120.13427 * 180.30023 * 12 11 10 37 37 H 0.97001 * 119.99459 * 180.02562 * 17 16 14 38 38 H 1.08006 * 120.12519 * 180.02562 * 22 13 12 39 39 H 1.08007 * 119.87423 * 180.02562 * 23 22 13 40 40 H 1.08005 * 120.07302 * 359.96966 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2038 0.0000 4 6 3.5728 1.2209 0.0005 5 6 4.2817 0.0170 0.0005 6 7 5.6062 -0.2860 0.0005 7 6 5.7601 -1.5875 0.0000 8 16 7.3108 -2.4240 -0.0009 9 6 8.4336 -1.0043 0.0001 10 6 9.8596 -1.4916 -0.0011 11 6 10.5101 -1.7129 -1.2052 12 6 11.8142 -2.1522 -1.2183 13 6 12.4856 -2.3822 -0.0032 14 6 13.8258 -2.8331 -0.0042 15 1 14.2141 -3.3741 0.8459 16 6 14.6489 -2.5780 -1.1070 17 7 14.3204 -1.6490 -1.9674 18 14 16.2166 -3.5642 -1.3501 19 1 15.8802 -5.0048 -1.4790 20 1 16.9048 -3.1037 -2.5828 21 1 17.1114 -3.3674 -0.1814 22 6 11.8134 -2.1602 1.2130 23 6 10.5093 -1.7209 1.2020 24 7 4.5381 -2.1988 -0.0055 25 1 4.3729 -3.1547 -0.0107 26 6 3.5789 -1.1991 0.0000 27 6 2.1924 -1.1975 -0.0005 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6484 2.1346 0.0004 32 1 4.1029 2.1620 0.0009 33 1 8.2561 -0.4013 0.8906 34 1 8.2560 -0.3999 -0.8894 35 1 9.9927 -1.5358 -2.1366 36 1 12.3206 -2.3193 -2.1574 37 1 14.8908 -1.4725 -2.7319 38 1 12.3193 -2.3332 2.1514 39 1 9.9915 -1.5495 2.1342 40 1 1.6501 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399241375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:30 Heat of formation + Delta-G solvation = 69.256196 kcal Electronic energy + Delta-G solvation = -22327.114955 eV Core-core repulsion = 19004.233665 eV Total energy + Delta-G solvation = -3322.881291 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91846 -37.74060 -37.71653 -34.12199 -33.30739 -31.61863 -31.22620 -29.98339 -29.41099 -27.69497 -26.61187 -24.08087 -23.24807 -21.89456 -21.34417 -21.11238 -20.12640 -18.40620 -17.42293 -17.04716 -16.35546 -15.46362 -15.37737 -15.06464 -14.44033 -14.24648 -14.03628 -14.01538 -13.93651 -13.71767 -13.59378 -12.63201 -12.47196 -12.27644 -12.11738 -12.05126 -11.72560 -11.57613 -11.53799 -11.18133 -11.11739 -10.87255 -10.75365 -10.58048 -10.28144 -10.02649 -9.77505 -9.51331 -9.22792 -8.87782 -8.32366 -7.59383 -7.43278 -7.26681 -6.90693 -4.48089 0.80219 1.24599 1.39737 2.29602 2.62010 2.80419 2.97969 3.00248 3.01567 3.05402 3.30904 3.74514 3.82712 4.34241 4.51483 4.68720 4.80186 4.96875 5.17735 5.25457 5.34887 5.46999 5.50500 5.57372 5.62212 5.70903 5.73384 5.91473 6.20856 6.24441 6.25011 6.30859 6.41531 6.44520 6.74917 6.84922 6.93534 7.10444 7.14172 7.22328 7.48235 7.70759 7.72907 7.92068 7.96662 8.15323 8.49838 8.74306 8.82661 10.02608 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.044247 B = 0.002009 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.655791 B =13933.785556 C =14055.711832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.078 4.078 3 C -0.127 4.127 4 C -0.065 4.065 5 C 0.056 3.944 6 N -0.497 5.497 7 C 0.275 3.725 8 S -0.041 6.041 9 C -0.008 4.008 10 C -0.223 4.223 11 C -0.076 4.076 12 C -0.169 4.169 13 C 0.118 3.882 14 C -0.452 4.452 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.783 5.783 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.228 4.228 23 C -0.063 4.063 24 N -0.591 5.591 25 H 0.424 0.576 26 C 0.052 3.948 27 C -0.112 4.112 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.284 0.716 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.992 0.851 1.449 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.086 4.086 5 C -0.064 4.064 6 N -0.222 5.222 7 C -0.099 4.099 8 S 0.196 5.804 9 C -0.154 4.154 10 C -0.228 4.228 11 C -0.096 4.096 12 C -0.188 4.188 13 C 0.115 3.885 14 C -0.481 4.481 15 H 0.099 0.901 16 C -0.145 4.145 17 N -0.407 5.407 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.248 4.248 23 C -0.084 4.084 24 N -0.205 5.205 25 H 0.263 0.737 26 C -0.060 4.060 27 C -0.133 4.133 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.078 0.459 1.224 19.123 hybrid contribution -0.235 -0.156 -0.178 0.333 sum -19.312 0.304 1.046 19.343 Atomic orbital electron populations 1.20730 0.90796 1.02719 1.02257 1.19557 0.95798 0.92133 1.00587 1.20742 0.93238 0.97528 1.03224 1.20263 0.93088 0.95663 0.99560 1.19145 0.89429 0.93110 1.04736 1.71076 1.16614 1.09972 1.24561 1.26122 0.92150 0.91537 1.00118 1.86371 0.88022 1.14874 1.91100 1.22181 0.93298 0.94192 1.05772 1.18425 0.92273 1.17870 0.94265 1.20559 0.95142 0.98737 0.95144 1.21306 0.93040 1.05694 0.98803 1.17704 0.92622 0.87192 0.90996 1.19679 0.95452 1.30977 1.02008 0.90119 1.25987 1.00112 0.93638 0.94733 1.69812 1.37085 1.23075 1.10707 0.86315 0.80610 0.80960 0.78621 1.18661 1.20198 1.18849 1.20958 0.95509 1.11219 0.97111 1.20416 0.94704 0.97981 0.95263 1.43034 1.04322 1.08949 1.64209 0.73677 1.18923 0.91469 0.89039 1.06545 1.19714 0.89312 0.98359 1.05939 0.91223 0.91385 0.91720 0.85458 0.85281 0.89515 0.89448 0.89082 0.86216 0.90479 0.88659 0.89050 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.00 36.01 0.36 -0.33 16 2 C -0.08 -0.76 5.88 -104.55 -0.62 -1.37 16 3 C -0.13 -1.28 9.66 -39.61 -0.38 -1.66 16 4 C -0.07 -0.83 10.10 -39.23 -0.40 -1.22 16 5 C 0.06 0.87 7.22 -84.69 -0.61 0.26 16 6 N -0.50 -8.60 10.57 -10.90 -0.12 -8.72 16 7 C 0.27 4.37 8.20 -88.44 -0.73 3.64 16 8 S -0.04 -0.66 22.29 -107.50 -2.40 -3.06 16 9 C -0.01 -0.14 5.27 36.01 0.19 0.05 16 10 C -0.22 -4.69 5.16 -104.33 -0.54 -5.22 16 11 C -0.08 -1.70 9.67 -39.66 -0.38 -2.08 16 12 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 13 C 0.12 3.03 5.58 -106.82 -0.60 2.43 16 14 C -0.45 -11.46 9.05 -37.74 -0.34 -11.80 16 15 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 16 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 17 N -0.78 -19.39 10.95 55.55 0.61 -18.79 16 18 Si 0.91 17.84 29.60 -169.99 -5.03 12.81 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 23 C -0.06 -1.37 9.67 -39.66 -0.38 -1.75 16 24 N -0.59 -7.77 6.28 -10.57 -0.07 -7.84 16 25 H 0.42 4.20 8.96 -40.82 -0.37 3.84 16 26 C 0.05 0.70 7.29 -83.84 -0.61 0.09 16 27 C -0.11 -1.20 9.70 -39.53 -0.38 -1.59 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.09 1.55 8.08 -51.92 -0.42 1.13 16 34 H 0.09 1.59 8.08 -51.92 -0.42 1.17 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 37 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -28.01 357.24 -12.72 -40.73 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.88 Total: 8.63 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -6.23 Total: -29.15 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.43 Total: -35.34 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.40 Total: -3.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.01 -12.72 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399241375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.987 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds