Wall clock time and date at job start Tue Mar 31 2020 13:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38703 * 119.78356 * 2 1 4 4 C 1.37690 * 120.49652 * 179.97438 * 3 2 1 5 5 C 1.39714 * 119.78014 * 0.02562 * 4 3 2 6 6 N 1.35874 * 133.38128 * 179.97438 * 5 4 3 7 7 C 1.31055 * 109.62825 * 180.02562 * 6 5 4 8 8 S 1.76197 * 125.08130 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99797 * 0.02752 * 8 7 6 10 10 C 1.50699 * 109.46926 * 180.02562 * 9 8 7 11 11 C 1.38636 * 119.75289 * 89.99601 * 10 9 8 12 12 C 1.37615 * 120.25185 * 179.70401 * 11 10 9 13 13 C 1.40720 * 119.74367 * 0.27407 * 12 11 10 14 14 C 1.41400 * 120.24537 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99966 * 204.38968 * 14 13 12 16 16 C 1.39950 * 119.99539 * 24.39535 * 14 13 12 17 17 N 1.30819 * 120.00082 * 17.85436 * 16 14 13 18 18 Si 1.86800 * 119.99528 * 197.85557 * 16 14 13 19 19 H 1.48492 * 109.47384 * 59.99611 * 18 16 14 20 20 H 1.48500 * 109.46729 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46863 * 299.99545 * 18 16 14 22 22 C 1.40718 * 119.51008 * 0.02562 * 13 12 11 23 23 C 1.37614 * 119.74514 * 359.97438 * 22 13 12 24 24 N 1.36637 * 109.83758 * 0.22928 * 7 6 5 25 25 H 0.97000 * 126.38375 * 179.73410 * 24 7 6 26 26 C 1.38543 * 107.23424 * 359.62942 * 24 7 6 27 27 C 1.37976 * 119.78651 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46769 * 269.96815 * 1 2 3 29 29 H 1.08991 * 109.47258 * 29.97530 * 1 2 3 30 30 H 1.09005 * 109.46896 * 149.97844 * 1 2 3 31 31 H 1.07996 * 119.74861 * 0.02647 * 3 2 1 32 32 H 1.08006 * 120.10713 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47157 * 59.99891 * 9 8 7 34 34 H 1.09000 * 109.47272 * 299.99379 * 9 8 7 35 35 H 1.08001 * 119.87542 * 359.97438 * 11 10 9 36 36 H 1.08000 * 120.13427 * 180.30023 * 12 11 10 37 37 H 0.97001 * 119.99459 * 180.02562 * 17 16 14 38 38 H 1.08006 * 120.12519 * 180.02562 * 22 13 12 39 39 H 1.08007 * 119.87423 * 180.02562 * 23 22 13 40 40 H 1.08005 * 120.07302 * 359.96966 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2038 0.0000 4 6 3.5728 1.2209 0.0005 5 6 4.2817 0.0170 0.0005 6 7 5.6062 -0.2860 0.0005 7 6 5.7601 -1.5875 0.0000 8 16 7.3108 -2.4240 -0.0009 9 6 8.4336 -1.0043 0.0001 10 6 9.8596 -1.4916 -0.0011 11 6 10.5101 -1.7129 -1.2052 12 6 11.8142 -2.1522 -1.2183 13 6 12.4856 -2.3822 -0.0032 14 6 13.8258 -2.8331 -0.0042 15 1 14.2141 -3.3741 0.8459 16 6 14.6489 -2.5780 -1.1070 17 7 14.3204 -1.6490 -1.9674 18 14 16.2166 -3.5642 -1.3501 19 1 15.8802 -5.0048 -1.4790 20 1 16.9048 -3.1037 -2.5828 21 1 17.1114 -3.3674 -0.1814 22 6 11.8134 -2.1602 1.2130 23 6 10.5093 -1.7209 1.2020 24 7 4.5381 -2.1988 -0.0055 25 1 4.3729 -3.1547 -0.0107 26 6 3.5789 -1.1991 0.0000 27 6 2.1924 -1.1975 -0.0005 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6484 2.1346 0.0004 32 1 4.1029 2.1620 0.0009 33 1 8.2561 -0.4013 0.8906 34 1 8.2560 -0.3999 -0.8894 35 1 9.9927 -1.5358 -2.1366 36 1 12.3206 -2.3193 -2.1574 37 1 14.8908 -1.4725 -2.7319 38 1 12.3193 -2.3332 2.1514 39 1 9.9915 -1.5495 2.1342 40 1 1.6501 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399241375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:29 Heat of formation + Delta-G solvation = 57.224572 kcal Electronic energy + Delta-G solvation = -22327.636686 eV Core-core repulsion = 19004.233665 eV Total energy + Delta-G solvation = -3323.403021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.94658 -39.52382 -38.59068 -35.89730 -34.33673 -33.09311 -32.32604 -31.22906 -30.89921 -29.38137 -27.47194 -25.76073 -24.22534 -22.98221 -22.90834 -22.31448 -21.81995 -19.47863 -19.25645 -17.99001 -17.48830 -17.17025 -16.50254 -16.07149 -16.04488 -15.69114 -15.65112 -15.21912 -14.91733 -14.81521 -14.32833 -14.29850 -13.88682 -13.79981 -13.45743 -13.06429 -12.89983 -12.80679 -12.73788 -12.55005 -12.38980 -12.37365 -12.16085 -11.82807 -11.78388 -11.52762 -11.31291 -11.11818 -10.99737 -9.92050 -9.41397 -9.25677 -9.24784 -8.68431 -8.45572 -6.36801 -0.15291 -0.05724 0.49684 0.79208 1.11966 1.27275 1.39305 1.50645 1.55481 1.61145 2.09808 2.19554 2.72378 2.81306 3.40239 3.71789 3.91071 4.00505 4.06831 4.08469 4.21003 4.34611 4.40220 4.49501 4.56504 4.70094 4.74551 4.80944 4.93221 5.02658 5.04025 5.12192 5.25158 5.31355 5.32902 5.39929 5.50305 5.63228 5.66002 5.89001 5.91118 6.06341 6.14348 6.17226 6.32721 6.64745 6.64870 6.89065 6.97685 8.27783 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.044247 B = 0.002009 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.655791 B =13933.785556 C =14055.711832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.069 4.069 3 C -0.119 4.119 4 C -0.083 4.083 5 C 0.013 3.987 6 N -0.525 5.525 7 C 0.255 3.745 8 S -0.017 6.017 9 C -0.006 4.006 10 C -0.211 4.211 11 C -0.081 4.081 12 C -0.191 4.191 13 C 0.087 3.913 14 C -0.491 4.491 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.817 5.817 18 Si 0.983 3.017 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.258 1.258 22 C -0.242 4.242 23 C -0.066 4.066 24 N -0.579 5.579 25 H 0.437 0.563 26 C 0.044 3.956 27 C -0.118 4.118 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.291 0.709 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.235 0.779 1.741 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.104 4.104 5 C -0.107 4.107 6 N -0.251 5.251 7 C -0.120 4.120 8 S 0.218 5.782 9 C -0.153 4.153 10 C -0.215 4.215 11 C -0.101 4.101 12 C -0.211 4.211 13 C 0.084 3.916 14 C -0.520 4.520 15 H 0.098 0.902 16 C -0.181 4.181 17 N -0.443 5.443 18 Si 0.804 3.196 19 H -0.184 1.184 20 H -0.192 1.192 21 H -0.182 1.182 22 C -0.262 4.262 23 C -0.086 4.086 24 N -0.195 5.195 25 H 0.279 0.721 26 C -0.067 4.067 27 C -0.139 4.139 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.176 0.824 32 H 0.150 0.850 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.324 0.383 1.524 22.379 hybrid contribution 0.319 0.012 -0.228 0.392 sum -22.005 0.395 1.296 22.047 Atomic orbital electron populations 1.20825 0.87931 1.04137 1.03480 1.20076 0.97774 0.91444 0.97875 1.21161 0.92304 0.99268 1.01154 1.20524 0.94323 0.95122 1.00401 1.19578 0.89093 0.94937 1.07050 1.70952 1.18375 1.10813 1.24988 1.25791 0.92582 0.91578 1.02042 1.86047 0.88048 1.12259 1.91827 1.21973 0.92160 0.95238 1.05972 1.18662 0.93725 1.15599 0.93552 1.20759 0.94480 0.98274 0.96550 1.21270 0.94109 1.07541 0.98172 1.18045 0.93418 0.88276 0.91906 1.19908 0.96123 1.32748 1.03249 0.90197 1.26814 1.03229 0.94119 0.93938 1.69865 1.38674 1.24318 1.11403 0.85228 0.76411 0.79130 0.78849 1.18431 1.19187 1.18247 1.21158 0.96481 1.11674 0.96856 1.20700 0.94128 0.97141 0.96629 1.42903 1.03417 1.09689 1.63441 0.72092 1.19249 0.92470 0.88312 1.06710 1.20117 0.88186 1.00154 1.05433 0.89900 0.89890 0.90518 0.82361 0.85032 0.89102 0.89604 0.87560 0.87826 0.89874 0.87960 0.86382 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.00 71.24 0.71 -0.15 16 2 C -0.07 -1.09 5.88 -19.81 -0.12 -1.20 16 3 C -0.12 -2.05 9.66 22.25 0.21 -1.83 16 4 C -0.08 -2.01 10.10 22.50 0.23 -1.78 16 5 C 0.01 0.40 7.22 39.42 0.28 0.68 16 6 N -0.53 -18.13 10.57 -188.41 -1.99 -20.12 16 7 C 0.25 7.95 8.20 179.59 1.47 9.42 16 8 S -0.02 -0.55 22.29 -56.49 -1.26 -1.81 16 9 C -0.01 -0.21 5.27 71.24 0.38 0.16 16 10 C -0.21 -8.89 5.16 -19.67 -0.10 -8.99 16 11 C -0.08 -3.70 9.67 22.22 0.21 -3.49 16 12 C -0.19 -9.97 8.70 22.73 0.20 -9.77 16 13 C 0.09 4.63 5.58 -21.29 -0.12 4.51 16 14 C -0.49 -26.01 9.05 23.46 0.21 -25.80 16 15 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 16 C 0.04 1.74 5.14 85.26 0.44 2.18 16 17 N -0.82 -42.10 10.95 21.83 0.24 -41.86 16 18 Si 0.98 37.33 29.60 68.60 2.03 39.36 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 22 C -0.24 -11.69 9.80 22.73 0.22 -11.47 16 23 C -0.07 -2.85 9.67 22.22 0.21 -2.63 16 24 N -0.58 -14.51 6.28 -187.35 -1.18 -15.69 16 25 H 0.44 7.97 8.96 -92.71 -0.83 7.14 16 26 C 0.04 1.12 7.29 38.72 0.28 1.40 16 27 C -0.12 -2.18 9.70 22.31 0.22 -1.97 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.08 0.49 8.08 -2.38 -0.02 0.47 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.09 3.19 8.08 -2.40 -0.02 3.17 16 34 H 0.09 3.10 8.08 -2.40 -0.02 3.09 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 37 H 0.29 13.51 8.30 -92.71 -0.77 12.75 16 38 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 39 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -63.45 357.24 3.04 -60.41 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.24 Total: 30.41 kcal Atomic # 6 Polarization: -55.66 SS G_CDS: 4.95 Total: -50.71 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -2.93 Total: -77.67 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -1.26 Total: -1.81 kcal Total: -63.45 3.04 -60.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399241375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.638 kcal (2) G-P(sol) polarization free energy of solvation -63.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds