Wall clock time and date at job start Tue Mar 31 2020 13:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38375 * 119.91071 * 2 1 4 4 C 1.38226 * 120.26830 * 180.02562 * 3 2 1 5 5 C 1.38313 * 120.09527 * 0.02562 * 4 3 2 6 6 F 1.35102 * 120.09088 * 180.02562 * 5 4 3 7 7 C 1.39529 * 119.82259 * 359.76584 * 5 4 3 8 8 C 1.48378 * 120.13659 * 180.28252 * 7 5 4 9 9 N 1.30864 * 126.32321 * 179.89878 * 8 7 5 10 10 O 1.21269 * 110.32872 * 179.80134 * 9 8 7 11 11 C 1.34193 * 109.92344 * 0.46244 * 10 9 8 12 12 C 1.47874 * 126.56436 * 179.71265 * 11 10 9 13 13 C 1.39928 * 120.02655 * 179.73033 * 12 11 10 14 14 C 1.38333 * 120.35422 * 179.71513 * 13 12 11 15 15 C 1.37748 * 120.41070 * 0.56078 * 14 13 12 16 16 C 1.40758 * 120.03626 * 359.71735 * 15 14 13 17 17 C 1.41436 * 120.17605 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00590 * 24.48152 * 17 16 15 19 19 C 1.39938 * 119.99653 * 204.48792 * 17 16 15 20 20 N 1.30825 * 120.00272 * 17.88293 * 19 17 16 21 21 Si 1.86804 * 119.99582 * 197.88082 * 19 17 16 22 22 H 1.48497 * 109.47173 * 90.00176 * 21 19 17 23 23 H 1.48502 * 109.46677 * 209.99820 * 21 19 17 24 24 H 1.48497 * 109.47181 * 330.00079 * 21 19 17 25 25 C 1.38978 * 120.01917 * 359.97438 * 12 11 10 26 26 N 1.31954 * 106.88264 * 359.71672 * 11 10 9 27 27 C 1.37981 * 119.91098 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47069 * 269.97357 * 1 2 3 29 29 H 1.08994 * 109.47252 * 29.97202 * 1 2 3 30 30 H 1.09004 * 109.47543 * 149.97877 * 1 2 3 31 31 H 1.07994 * 119.86649 * 0.02562 * 3 2 1 32 32 H 1.07998 * 119.95094 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.81926 * 359.97438 * 13 12 11 34 34 H 1.08001 * 119.79110 * 180.25617 * 14 13 12 35 35 H 1.08001 * 119.98116 * 179.69854 * 15 14 13 36 36 H 0.97001 * 120.00506 * 179.97438 * 20 19 17 37 37 H 1.08004 * 120.20349 * 0.02786 * 25 12 11 38 38 H 1.08008 * 120.04750 * 359.97421 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1994 0.0000 4 6 3.5792 1.2081 -0.0005 5 6 4.2802 0.0157 -0.0016 6 9 5.6312 0.0243 -0.0016 7 6 3.5884 -1.1960 0.0028 8 6 4.3334 -2.4791 0.0080 9 7 3.8108 -3.6789 0.0143 10 8 4.6851 -4.5193 0.0133 11 6 5.8891 -3.9266 0.0163 12 6 7.2040 -4.6031 0.0222 13 6 8.3809 -3.8462 0.0191 14 6 9.6145 -4.4720 0.0305 15 6 9.6989 -5.8469 0.0335 16 6 8.5259 -6.6248 0.0309 17 6 8.6091 -8.0367 0.0335 18 1 9.4893 -8.5252 0.4247 19 6 7.5509 -8.8008 -0.4711 20 7 6.6573 -8.2471 -1.2498 21 14 7.4144 -10.6116 -0.0328 22 1 6.6061 -10.7620 1.2038 23 1 6.7567 -11.3420 -1.1460 24 1 8.7718 -11.1701 0.1922 25 6 7.2717 -5.9912 0.0258 26 7 5.6752 -2.6245 0.0130 27 6 2.1950 -1.1960 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6534 2.1326 0.0004 32 1 4.1126 2.1472 -0.0001 33 1 8.3257 -2.7677 0.0119 34 1 10.5171 -3.8789 0.0322 35 1 10.6657 -6.3282 0.0376 36 1 5.9239 -8.7769 -1.5999 37 1 6.3659 -6.5794 0.0238 38 1 1.6543 -2.1310 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000445446302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:41 Heat of formation + Delta-G solvation = 59.764232 kcal Electronic energy + Delta-G solvation = -25405.308041 eV Core-core repulsion = 21515.801972 eV Total energy + Delta-G solvation = -3889.506069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.75790 -44.92008 -39.39476 -37.75012 -35.48744 -33.98466 -33.00430 -32.47878 -31.02042 -29.83639 -29.15524 -26.89372 -25.53118 -24.60695 -23.89987 -22.41131 -21.53164 -20.76326 -20.02812 -17.92367 -17.55553 -17.53341 -16.92004 -16.31669 -15.62735 -15.53825 -15.36134 -14.82068 -14.47436 -14.33181 -14.00178 -13.89894 -13.52503 -13.45850 -12.88503 -12.64872 -12.29969 -12.27563 -12.05538 -12.00386 -11.96834 -11.52897 -11.33987 -11.27492 -11.20851 -10.90624 -10.65995 -10.50841 -10.11744 -9.89789 -9.80419 -9.30183 -9.05730 -8.57822 -7.64142 -7.61066 -6.90483 -4.51831 0.56048 0.95962 1.35845 2.43900 2.70018 3.02558 3.04133 3.05989 3.20906 3.34083 3.50797 3.65124 3.84816 4.07219 4.27827 4.47436 4.49251 4.68865 4.86067 4.91707 5.23675 5.32292 5.41105 5.44926 5.53190 5.62993 5.80446 5.91822 6.00140 6.04846 6.12287 6.22404 6.31439 6.40811 6.61756 6.64933 6.84197 6.92940 7.09683 7.22542 7.58764 7.71689 7.80657 8.00145 8.36340 8.58337 8.68494 8.71378 10.04705 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.002988 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.397711 B = 9367.753263 C =10708.920920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C -0.079 4.079 4 C -0.157 4.157 5 C 0.136 3.864 6 F -0.113 7.113 7 C -0.041 4.041 8 C 0.198 3.802 9 N -0.389 5.389 10 O 0.084 5.916 11 C 0.272 3.728 12 C -0.035 4.035 13 C -0.185 4.185 14 C -0.097 4.097 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.458 4.458 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.789 5.789 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.112 4.112 26 N -0.481 5.481 27 C -0.059 4.059 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.285 0.715 37 H 0.132 0.868 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.835 13.146 1.739 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.098 4.098 4 C -0.175 4.175 5 C 0.115 3.885 6 F -0.091 7.091 7 C -0.043 4.043 8 C -0.072 4.072 9 N -0.098 5.098 10 O 0.024 5.976 11 C 0.057 3.943 12 C -0.037 4.037 13 C -0.205 4.205 14 C -0.116 4.116 15 C -0.219 4.219 16 C 0.098 3.902 17 C -0.487 4.487 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.414 5.414 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.133 4.133 26 N -0.214 5.214 27 C -0.079 4.079 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.754 13.361 1.587 17.225 hybrid contribution 0.269 -0.961 0.023 0.998 sum -10.485 12.400 1.609 16.319 Atomic orbital electron populations 1.20771 0.90200 1.03164 1.02668 1.19850 0.96760 0.92352 1.01432 1.21000 0.92995 0.98061 0.97706 1.21091 0.94898 0.96857 1.04690 1.17649 0.77846 0.92953 1.00084 1.91616 1.27479 1.97142 1.92898 1.17434 0.92636 0.87168 1.07110 1.23492 0.87981 0.92911 1.02864 1.74773 1.13735 0.99023 1.22253 1.85379 1.13134 1.33142 1.65931 1.27002 0.89427 0.85948 0.91898 1.17211 0.83768 0.93200 1.09556 1.20360 0.90702 0.98000 1.11487 1.20487 0.95608 0.94624 1.00846 1.21217 0.97592 0.92987 1.10066 1.17483 0.90139 0.93548 0.89003 1.19589 1.02657 0.90756 1.35699 0.89843 1.25952 0.94494 1.01520 0.92448 1.69764 1.11111 1.38965 1.21550 0.86253 0.79693 0.81348 0.79171 1.19103 1.20212 1.18512 1.21599 0.99825 0.90362 1.01532 1.72393 1.11913 1.14346 1.22770 1.20982 0.91298 0.99012 0.96642 0.90873 0.91208 0.91182 0.84662 0.84023 0.87531 0.88142 0.88132 0.90386 0.85010 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.10 -1.02 5.88 -104.67 -0.61 -1.64 16 3 C -0.08 -0.70 9.69 -39.54 -0.38 -1.09 16 4 C -0.16 -1.68 10.02 -39.56 -0.40 -2.08 16 5 C 0.14 2.01 7.28 -39.07 -0.28 1.73 16 6 F -0.11 -1.94 15.80 2.25 0.04 -1.90 16 7 C -0.04 -0.66 5.88 -104.83 -0.62 -1.27 16 8 C 0.20 3.90 7.78 -156.28 -1.22 2.69 16 9 N -0.39 -7.92 11.84 31.20 0.37 -7.55 16 10 O 0.08 1.84 11.10 16.68 0.19 2.03 16 11 C 0.27 6.08 8.00 -13.79 -0.11 5.97 16 12 C -0.03 -0.81 5.87 -105.05 -0.62 -1.42 16 13 C -0.18 -4.08 9.71 -38.91 -0.38 -4.45 16 14 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 15 C -0.20 -4.49 9.78 -38.81 -0.38 -4.87 16 16 C 0.10 2.51 5.57 -106.87 -0.60 1.92 16 17 C -0.46 -11.34 9.05 -37.73 -0.34 -11.68 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 19 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 20 N -0.79 -19.49 10.96 55.55 0.61 -18.88 16 21 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 C -0.11 -2.77 8.37 -38.45 -0.32 -3.09 16 26 N -0.48 -10.40 9.93 -10.22 -0.10 -10.50 16 27 C -0.06 -0.77 9.34 -39.27 -0.37 -1.13 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.11 2.25 7.86 -52.49 -0.41 1.84 16 34 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 37 H 0.13 3.37 6.03 -52.48 -0.32 3.06 16 38 H 0.14 1.75 7.87 -52.48 -0.41 1.33 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -27.59 342.38 -9.16 -36.75 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.64 Total: 3.69 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -6.75 Total: -21.58 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.88 Total: -36.93 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.19 Total: 2.03 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.59 -9.16 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445446302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.518 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds