Wall clock time and date at job start Tue Mar 31 2020 13:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38375 * 119.91071 * 2 1 4 4 C 1.38226 * 120.26830 * 180.02562 * 3 2 1 5 5 C 1.38313 * 120.09527 * 0.02562 * 4 3 2 6 6 F 1.35102 * 120.09088 * 180.02562 * 5 4 3 7 7 C 1.39529 * 119.82259 * 359.76584 * 5 4 3 8 8 C 1.48378 * 120.13659 * 180.28252 * 7 5 4 9 9 N 1.30864 * 126.32321 * 179.89878 * 8 7 5 10 10 O 1.21269 * 110.32872 * 179.80134 * 9 8 7 11 11 C 1.34193 * 109.92344 * 0.46244 * 10 9 8 12 12 C 1.47874 * 126.56436 * 179.71265 * 11 10 9 13 13 C 1.39928 * 120.02655 * 179.73033 * 12 11 10 14 14 C 1.38333 * 120.35422 * 179.71513 * 13 12 11 15 15 C 1.37748 * 120.41070 * 0.56078 * 14 13 12 16 16 C 1.40758 * 120.03626 * 359.71735 * 15 14 13 17 17 C 1.41436 * 120.17605 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00590 * 24.48152 * 17 16 15 19 19 C 1.39938 * 119.99653 * 204.48792 * 17 16 15 20 20 N 1.30825 * 120.00272 * 17.88293 * 19 17 16 21 21 Si 1.86804 * 119.99582 * 197.88082 * 19 17 16 22 22 H 1.48497 * 109.47173 * 90.00176 * 21 19 17 23 23 H 1.48502 * 109.46677 * 209.99820 * 21 19 17 24 24 H 1.48497 * 109.47181 * 330.00079 * 21 19 17 25 25 C 1.38978 * 120.01917 * 359.97438 * 12 11 10 26 26 N 1.31954 * 106.88264 * 359.71672 * 11 10 9 27 27 C 1.37981 * 119.91098 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47069 * 269.97357 * 1 2 3 29 29 H 1.08994 * 109.47252 * 29.97202 * 1 2 3 30 30 H 1.09004 * 109.47543 * 149.97877 * 1 2 3 31 31 H 1.07994 * 119.86649 * 0.02562 * 3 2 1 32 32 H 1.07998 * 119.95094 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.81926 * 359.97438 * 13 12 11 34 34 H 1.08001 * 119.79110 * 180.25617 * 14 13 12 35 35 H 1.08001 * 119.98116 * 179.69854 * 15 14 13 36 36 H 0.97001 * 120.00506 * 179.97438 * 20 19 17 37 37 H 1.08004 * 120.20349 * 0.02786 * 25 12 11 38 38 H 1.08008 * 120.04750 * 359.97421 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1994 0.0000 4 6 3.5792 1.2081 -0.0005 5 6 4.2802 0.0157 -0.0016 6 9 5.6312 0.0243 -0.0016 7 6 3.5884 -1.1960 0.0028 8 6 4.3334 -2.4791 0.0080 9 7 3.8108 -3.6789 0.0143 10 8 4.6851 -4.5193 0.0133 11 6 5.8891 -3.9266 0.0163 12 6 7.2040 -4.6031 0.0222 13 6 8.3809 -3.8462 0.0191 14 6 9.6145 -4.4720 0.0305 15 6 9.6989 -5.8469 0.0335 16 6 8.5259 -6.6248 0.0309 17 6 8.6091 -8.0367 0.0335 18 1 9.4893 -8.5252 0.4247 19 6 7.5509 -8.8008 -0.4711 20 7 6.6573 -8.2471 -1.2498 21 14 7.4144 -10.6116 -0.0328 22 1 6.6061 -10.7620 1.2038 23 1 6.7567 -11.3420 -1.1460 24 1 8.7718 -11.1701 0.1922 25 6 7.2717 -5.9912 0.0258 26 7 5.6752 -2.6245 0.0130 27 6 2.1950 -1.1960 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6534 2.1326 0.0004 32 1 4.1126 2.1472 -0.0001 33 1 8.3257 -2.7677 0.0119 34 1 10.5171 -3.8789 0.0322 35 1 10.6657 -6.3282 0.0376 36 1 5.9239 -8.7769 -1.5999 37 1 6.3659 -6.5794 0.0238 38 1 1.6543 -2.1310 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000445446302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:41 Heat of formation + Delta-G solvation = 46.739723 kcal Electronic energy + Delta-G solvation = -25405.872826 eV Core-core repulsion = 21515.801972 eV Total energy + Delta-G solvation = -3890.070855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.92818 -46.54482 -40.32098 -39.54920 -37.04915 -35.74339 -34.50775 -33.37328 -32.26003 -31.64161 -30.82506 -27.66638 -27.32893 -25.90912 -25.48052 -23.78310 -22.83761 -22.38298 -21.51323 -19.54486 -19.20102 -18.86331 -18.27652 -17.54887 -17.05195 -16.80815 -16.69457 -16.54719 -16.08256 -15.38252 -15.19678 -14.96351 -14.58632 -14.57575 -14.41405 -14.33587 -13.79867 -13.68078 -13.49180 -13.19125 -12.94211 -12.87436 -12.81527 -12.70893 -12.47946 -12.36566 -12.20179 -12.09401 -11.74339 -11.64100 -11.55964 -11.05525 -10.10561 -9.59864 -9.48220 -9.37109 -8.69013 -6.40307 -0.65491 -0.26373 0.05450 0.91379 0.97847 1.40493 1.42549 1.54241 1.58049 1.64612 2.20352 2.28372 2.48059 2.67952 2.75335 3.14420 3.59592 3.60992 3.79532 3.84042 4.09544 4.17751 4.29116 4.40480 4.54319 4.61932 4.67742 4.81668 4.83174 4.86571 4.88267 5.01108 5.02989 5.09256 5.13266 5.26056 5.28142 5.40900 5.41573 5.75896 5.77463 5.90764 5.97769 6.19185 6.51410 6.84593 6.85490 6.93329 8.28198 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.002988 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.397711 B = 9367.753263 C =10708.920920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.057 4.057 4 C -0.145 4.145 5 C 0.108 3.892 6 F -0.136 7.136 7 C -0.081 4.081 8 C 0.205 3.795 9 N -0.398 5.398 10 O 0.063 5.937 11 C 0.260 3.740 12 C -0.041 4.041 13 C -0.185 4.185 14 C -0.090 4.090 15 C -0.202 4.202 16 C 0.074 3.926 17 C -0.488 4.488 18 H 0.089 0.911 19 C 0.035 3.965 20 N -0.823 5.823 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.136 4.136 26 N -0.490 5.490 27 C -0.068 4.068 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.116 0.884 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.290 0.710 37 H 0.113 0.887 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 15.545 1.973 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.075 4.075 4 C -0.164 4.164 5 C 0.087 3.913 6 F -0.114 7.114 7 C -0.084 4.084 8 C -0.065 4.065 9 N -0.111 5.111 10 O 0.008 5.992 11 C 0.044 3.956 12 C -0.044 4.044 13 C -0.206 4.206 14 C -0.108 4.108 15 C -0.222 4.222 16 C 0.072 3.928 17 C -0.516 4.516 18 H 0.107 0.893 19 C -0.181 4.181 20 N -0.448 5.448 21 Si 0.803 3.197 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.157 4.157 26 N -0.224 5.224 27 C -0.088 4.088 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.202 0.798 32 H 0.189 0.811 33 H 0.134 0.866 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.916 15.744 1.821 19.828 hybrid contribution 0.519 -1.438 -0.058 1.530 sum -11.397 14.306 1.763 18.375 Atomic orbital electron populations 1.20880 0.87525 1.04485 1.03870 1.20282 0.98549 0.91444 0.99098 1.21584 0.92258 0.99493 0.94169 1.21484 0.95793 0.96257 1.02834 1.18085 0.77173 0.94049 1.02039 1.91549 1.29204 1.97288 1.93384 1.17693 0.93849 0.85916 1.10967 1.24225 0.87533 0.94166 1.00573 1.74744 1.13311 0.99255 1.23752 1.85358 1.13242 1.33898 1.66667 1.26989 0.89478 0.86439 0.92645 1.17381 0.84778 0.92992 1.09211 1.20610 0.90758 0.98458 1.10772 1.20869 0.96620 0.94369 0.98920 1.21496 0.97636 0.93739 1.09371 1.17850 0.90953 0.94366 0.89642 1.19870 1.03703 0.91179 1.36889 0.89319 1.26798 0.93719 1.05844 0.91727 1.69839 1.11775 1.40751 1.22465 0.85189 0.79909 0.75828 0.78788 1.18951 1.19590 1.17601 1.21453 0.99389 0.90907 1.03973 1.72387 1.13242 1.13775 1.22984 1.21100 0.90090 1.00448 0.97156 0.89564 0.88537 0.91327 0.79849 0.81115 0.86572 0.84180 0.86310 0.89951 0.86883 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.34 16 2 C -0.09 -1.54 5.88 -19.89 -0.12 -1.66 16 3 C -0.06 -0.75 9.69 22.30 0.22 -0.53 16 4 C -0.15 -2.67 10.02 22.28 0.22 -2.44 16 5 C 0.11 3.14 7.28 22.60 0.16 3.31 16 6 F -0.14 -4.72 15.80 44.97 0.71 -4.01 16 7 C -0.08 -2.66 5.88 -20.00 -0.12 -2.78 16 8 C 0.21 8.48 7.78 137.33 1.07 9.55 16 9 N -0.40 -17.18 11.84 -57.74 -0.68 -17.87 16 10 O 0.06 2.97 11.10 69.75 0.77 3.74 16 11 C 0.26 12.31 8.00 87.31 0.70 13.01 16 12 C -0.04 -2.00 5.87 -20.14 -0.12 -2.12 16 13 C -0.19 -8.26 9.71 22.70 0.22 -8.04 16 14 C -0.09 -3.71 10.01 22.18 0.22 -3.49 16 15 C -0.20 -9.17 9.78 22.77 0.22 -8.94 16 16 C 0.07 3.83 5.57 -21.32 -0.12 3.71 16 17 C -0.49 -24.86 9.05 23.47 0.21 -24.65 16 18 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 19 C 0.03 1.70 5.14 85.25 0.44 2.13 16 20 N -0.82 -42.46 10.96 21.82 0.24 -42.22 16 21 Si 0.98 37.12 29.60 68.60 2.03 39.15 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 25 C -0.14 -7.10 8.37 23.00 0.19 -6.91 16 26 N -0.49 -22.16 9.93 -302.30 -3.00 -25.16 16 27 C -0.07 -1.71 9.34 22.47 0.21 -1.50 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.46 8.08 -2.39 -0.02 0.44 16 30 H 0.07 0.71 8.08 -2.38 -0.02 0.69 16 31 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 32 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.12 4.92 7.86 -2.91 -0.02 4.90 16 34 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 37 H 0.11 6.25 6.03 -2.91 -0.02 6.23 16 38 H 0.13 3.41 7.87 -2.91 -0.02 3.39 16 Total: -1.00 -64.60 342.38 5.51 -59.09 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.11 Total: 18.96 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 4.33 Total: -31.68 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -3.44 Total: -85.25 kcal Atomic # 8 Polarization: 2.97 SS G_CDS: 0.77 Total: 3.74 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.71 Total: -4.01 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -64.60 5.51 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445446302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.827 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds