Wall clock time and date at job start Tue Mar 31 2020 13:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40306 * 119.78613 * 2 1 4 4 C 1.35557 * 119.38648 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.51668 * 179.97438 * 4 3 2 6 6 N 1.36380 * 118.96966 * 359.71338 * 4 3 2 7 7 C 1.37362 * 120.12165 * 0.56761 * 6 4 3 8 8 N 1.32314 * 106.62587 * 179.66309 * 7 6 4 9 9 N 1.28631 * 109.61305 * 359.74569 * 8 7 6 10 10 C 1.30718 * 110.31118 * 359.97438 * 9 8 7 11 11 S 1.76199 * 126.29321 * 180.02562 * 10 9 8 12 12 O 1.42097 * 104.27738 * 237.55385 * 11 10 9 13 13 O 1.42102 * 104.27872 * 109.69420 * 11 10 9 14 14 C 1.81401 * 104.45193 * 353.62542 * 11 10 9 15 15 C 1.52999 * 109.47389 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47128 * 179.97438 * 15 14 11 17 17 C 1.50699 * 109.46764 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00638 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99875 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99873 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47155 * 89.99784 * 21 19 17 23 23 H 1.48499 * 109.46924 * 210.00183 * 21 19 17 24 24 H 1.48501 * 109.47105 * 329.99688 * 21 19 17 25 25 N 1.31235 * 119.77988 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.47438 * 270.02705 * 1 2 3 27 27 H 1.09000 * 109.46908 * 30.02715 * 1 2 3 28 28 H 1.09003 * 109.46946 * 150.02098 * 1 2 3 29 29 H 1.08007 * 120.30582 * 359.95162 * 3 2 1 30 30 H 1.08999 * 109.46986 * 96.11418 * 5 4 3 31 31 H 1.08996 * 109.47194 * 216.11763 * 5 4 3 32 32 H 1.09003 * 109.47013 * 336.11897 * 5 4 3 33 33 H 1.08998 * 109.47202 * 59.99366 * 14 11 10 34 34 H 1.09002 * 109.46865 * 299.99758 * 14 11 10 35 35 H 1.09002 * 109.46732 * 299.99610 * 15 14 11 36 36 H 1.08998 * 109.46936 * 59.99625 * 15 14 11 37 37 H 1.09002 * 109.47137 * 299.99535 * 16 15 14 38 38 H 1.08998 * 109.46925 * 59.99784 * 16 15 14 39 39 H 0.97002 * 119.99604 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2177 0.0000 4 6 3.5595 1.2082 0.0005 5 6 4.3338 2.5011 0.0000 6 7 4.2117 0.0105 0.0070 7 6 3.4980 -1.1631 0.0011 8 7 4.3845 -2.1453 0.0022 9 7 5.5733 -1.6540 0.0028 10 6 5.5244 -0.3478 0.0017 11 16 6.9046 0.7476 0.0015 12 8 6.7193 1.5451 1.1628 13 8 6.8912 1.3279 -1.2956 14 6 8.3443 -0.3383 0.1981 15 6 9.6209 0.5050 0.2134 16 6 10.8352 -0.4108 0.3799 17 6 12.0925 0.4198 0.3944 18 1 12.0317 1.4934 0.2945 19 6 13.3207 -0.1911 0.5343 20 7 14.4180 0.5337 0.5464 21 14 13.4260 -2.0481 0.7064 22 1 13.5508 -2.6637 -0.6392 23 1 14.6130 -2.4028 1.5252 24 1 12.1977 -2.5541 1.3703 25 7 2.1588 -1.1390 0.0005 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6655 2.1539 -0.0008 30 1 4.6140 2.7572 1.0217 31 1 5.2329 2.3859 -0.6053 32 1 3.7144 3.2953 -0.4169 33 1 8.3840 -1.0431 -0.6324 34 1 8.2603 -0.8867 1.1363 35 1 9.7051 1.0538 -0.7246 36 1 9.5809 1.2095 1.0442 37 1 10.7507 -0.9592 1.3181 38 1 10.8752 -1.1156 -0.4506 39 1 15.2820 0.1039 0.6444 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447381946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:39 Heat of formation + Delta-G solvation = 45.939486 kcal Electronic energy + Delta-G solvation = -24955.172910 eV Core-core repulsion = 21220.431267 eV Total energy + Delta-G solvation = -3734.741642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.24957 -39.98404 -37.34294 -36.74991 -36.01356 -34.93514 -33.39841 -32.27694 -31.77843 -29.63381 -28.76561 -28.28465 -25.04893 -23.84523 -23.29564 -22.68696 -20.53250 -19.59781 -18.98452 -18.88764 -17.70661 -17.53476 -16.93891 -16.24425 -16.08678 -15.43428 -14.86730 -14.72866 -14.53056 -14.29358 -14.23035 -13.77531 -13.21874 -13.06729 -12.95908 -12.75941 -12.68877 -12.41423 -12.39253 -12.30112 -12.25629 -12.16915 -12.10012 -11.67540 -11.35936 -11.11466 -10.96781 -10.70498 -10.28248 -10.14352 -9.89813 -9.72950 -9.29965 -9.23345 -8.59478 -6.09747 -4.09674 -0.32646 -0.25290 0.06133 1.45026 1.76899 2.36048 2.73927 2.77930 3.12277 3.29095 3.37067 3.39634 3.40069 3.61281 3.97653 4.08457 4.34975 4.40802 4.41890 4.61061 4.65661 4.84509 4.85611 4.87403 4.88458 4.97643 5.08409 5.20729 5.24380 5.37512 5.45564 5.62319 5.85333 6.02285 6.14771 6.56602 6.78827 7.09392 7.22597 7.68219 7.76018 8.44534 8.93588 9.51208 11.03192 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.002920 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.980452 B = 9586.171868 C =10309.197539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.226 3.774 3 C -0.199 4.199 4 C 0.167 3.833 5 C -0.156 4.156 6 N -0.381 5.381 7 C 0.385 3.615 8 N -0.260 5.260 9 N -0.146 5.146 10 C -0.385 4.385 11 S 2.497 3.503 12 O -0.921 6.921 13 O -0.919 6.919 14 C -0.560 4.560 15 C -0.100 4.100 16 C -0.004 4.004 17 C -0.528 4.528 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.878 3.122 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.263 1.263 25 N -0.444 5.444 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.179 0.821 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.758 3.773 -0.869 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.060 3.940 3 C -0.222 4.222 4 C 0.053 3.947 5 C -0.213 4.213 6 N -0.064 5.064 7 C 0.032 3.968 8 N -0.113 5.113 9 N 0.007 4.993 10 C -0.722 4.722 11 S 2.671 3.329 12 O -0.917 6.917 13 O -0.915 6.915 14 C -0.696 4.696 15 C -0.140 4.140 16 C -0.043 4.043 17 C -0.566 4.566 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.538 5.538 21 Si 0.705 3.295 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.188 1.188 25 N -0.160 5.160 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.197 0.803 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.326 2.250 -0.937 29.427 hybrid contribution -0.088 -0.066 0.129 0.170 sum -29.414 2.184 -0.808 29.506 Atomic orbital electron populations 1.20911 0.85649 1.05201 1.04743 1.22196 0.98396 0.86733 0.86682 1.21741 0.91238 1.01707 1.07538 1.21250 0.93405 0.86608 0.93469 1.21702 1.01479 0.91166 1.06908 1.44421 1.07210 1.09152 1.45655 1.23944 0.90796 0.81841 1.00171 1.75042 0.93373 1.20414 1.22444 1.74260 1.15426 1.03407 1.06171 1.38330 1.01657 1.08191 1.23981 1.06617 0.75467 0.75380 0.75419 1.93609 1.84776 1.63606 1.49708 1.93610 1.85578 1.73026 1.39308 1.30034 1.11873 1.14225 1.13470 1.21488 0.90874 0.98253 1.03337 1.19560 0.92248 0.95293 0.97247 1.21082 0.89078 0.95486 1.50980 0.90648 1.25008 0.95656 0.98254 0.94396 1.69903 0.97946 1.35738 1.50183 0.86804 0.77988 0.86059 0.78643 1.20118 1.21270 1.18800 1.67941 1.01134 1.28832 1.18088 0.88446 0.88920 0.88976 0.80329 0.86015 0.89305 0.86703 0.83606 0.83768 0.90447 0.90426 0.95718 0.96117 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.31 10.19 36.01 0.37 0.06 16 2 C 0.23 1.72 6.83 -82.07 -0.56 1.16 16 3 C -0.20 -1.27 9.36 -39.76 -0.37 -1.64 16 4 C 0.17 1.68 6.82 -81.53 -0.56 1.12 16 5 C -0.16 -1.30 8.50 36.00 0.31 -1.00 16 6 N -0.38 -5.34 2.95 -60.61 -0.18 -5.52 16 7 C 0.39 5.83 9.03 -322.65 -2.91 2.92 16 8 N -0.26 -4.46 12.30 29.78 0.37 -4.09 16 9 N -0.15 -2.40 11.88 30.49 0.36 -2.04 16 10 C -0.39 -5.84 7.78 -89.25 -0.69 -6.54 16 11 S 2.50 35.90 3.86 -107.50 -0.42 35.49 16 12 O -0.92 -13.81 15.93 -57.54 -0.92 -14.72 16 13 O -0.92 -14.48 16.19 -57.54 -0.93 -15.41 16 14 C -0.56 -8.14 5.75 37.16 0.21 -7.92 16 15 C -0.10 -1.82 5.16 -26.73 -0.14 -1.95 16 16 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 17 C -0.53 -14.59 9.66 -34.44 -0.33 -14.92 16 18 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 21 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 25 N -0.44 -5.45 10.40 -9.92 -0.10 -5.55 16 26 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.09 0.02 8.09 -51.93 -0.42 -0.40 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.18 0.25 8.06 -52.48 -0.42 -0.17 16 30 H 0.12 0.99 7.45 -51.93 -0.39 0.60 16 31 H 0.09 0.96 4.58 -51.93 -0.24 0.73 16 32 H 0.11 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.15 1.88 8.14 -51.92 -0.42 1.46 16 34 H 0.14 1.84 8.14 -51.92 -0.42 1.41 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 38 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -37.46 340.42 -10.25 -47.71 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.77 Total: -4.03 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -4.89 Total: -27.06 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 1.22 Total: -43.67 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.85 Total: -30.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 35.90 SS G_CDS: -0.42 Total: 35.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.46 -10.25 -47.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447381946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.650 kcal (2) G-P(sol) polarization free energy of solvation -37.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds