Wall clock time and date at job start Tue Mar 31 2020 13:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40306 * 119.78613 * 2 1 4 4 C 1.35557 * 119.38648 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.51668 * 179.97438 * 4 3 2 6 6 N 1.36380 * 118.96966 * 359.71338 * 4 3 2 7 7 C 1.37362 * 120.12165 * 0.56761 * 6 4 3 8 8 N 1.32314 * 106.62587 * 179.66309 * 7 6 4 9 9 N 1.28631 * 109.61305 * 359.74569 * 8 7 6 10 10 C 1.30718 * 110.31118 * 359.97438 * 9 8 7 11 11 S 1.76199 * 126.29321 * 180.02562 * 10 9 8 12 12 O 1.42097 * 104.27738 * 237.55385 * 11 10 9 13 13 O 1.42102 * 104.27872 * 109.69420 * 11 10 9 14 14 C 1.81401 * 104.45193 * 353.62542 * 11 10 9 15 15 C 1.52999 * 109.47389 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47128 * 179.97438 * 15 14 11 17 17 C 1.50699 * 109.46764 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00638 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99875 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99873 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47155 * 89.99784 * 21 19 17 23 23 H 1.48499 * 109.46924 * 210.00183 * 21 19 17 24 24 H 1.48501 * 109.47105 * 329.99688 * 21 19 17 25 25 N 1.31235 * 119.77988 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.47438 * 270.02705 * 1 2 3 27 27 H 1.09000 * 109.46908 * 30.02715 * 1 2 3 28 28 H 1.09003 * 109.46946 * 150.02098 * 1 2 3 29 29 H 1.08007 * 120.30582 * 359.95162 * 3 2 1 30 30 H 1.08999 * 109.46986 * 96.11418 * 5 4 3 31 31 H 1.08996 * 109.47194 * 216.11763 * 5 4 3 32 32 H 1.09003 * 109.47013 * 336.11897 * 5 4 3 33 33 H 1.08998 * 109.47202 * 59.99366 * 14 11 10 34 34 H 1.09002 * 109.46865 * 299.99758 * 14 11 10 35 35 H 1.09002 * 109.46732 * 299.99610 * 15 14 11 36 36 H 1.08998 * 109.46936 * 59.99625 * 15 14 11 37 37 H 1.09002 * 109.47137 * 299.99535 * 16 15 14 38 38 H 1.08998 * 109.46925 * 59.99784 * 16 15 14 39 39 H 0.97002 * 119.99604 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2177 0.0000 4 6 3.5595 1.2082 0.0005 5 6 4.3338 2.5011 0.0000 6 7 4.2117 0.0105 0.0070 7 6 3.4980 -1.1631 0.0011 8 7 4.3845 -2.1453 0.0022 9 7 5.5733 -1.6540 0.0028 10 6 5.5244 -0.3478 0.0017 11 16 6.9046 0.7476 0.0015 12 8 6.7193 1.5451 1.1628 13 8 6.8912 1.3279 -1.2956 14 6 8.3443 -0.3383 0.1981 15 6 9.6209 0.5050 0.2134 16 6 10.8352 -0.4108 0.3799 17 6 12.0925 0.4198 0.3944 18 1 12.0317 1.4934 0.2945 19 6 13.3207 -0.1911 0.5343 20 7 14.4180 0.5337 0.5464 21 14 13.4260 -2.0481 0.7064 22 1 13.5508 -2.6637 -0.6392 23 1 14.6130 -2.4028 1.5252 24 1 12.1977 -2.5541 1.3703 25 7 2.1588 -1.1390 0.0005 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6655 2.1539 -0.0008 30 1 4.6140 2.7572 1.0217 31 1 5.2329 2.3859 -0.6053 32 1 3.7144 3.2953 -0.4169 33 1 8.3840 -1.0431 -0.6324 34 1 8.2603 -0.8867 1.1363 35 1 9.7051 1.0538 -0.7246 36 1 9.5809 1.2095 1.0442 37 1 10.7507 -0.9592 1.3181 38 1 10.8752 -1.1156 -0.4506 39 1 15.2820 0.1039 0.6444 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447381946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:38 Heat of formation + Delta-G solvation = 20.253965 kcal Electronic energy + Delta-G solvation = -24956.286717 eV Core-core repulsion = 21220.431267 eV Total energy + Delta-G solvation = -3735.855450 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.19252 -40.78164 -38.52350 -37.76264 -36.99029 -36.53204 -34.28892 -34.14166 -32.58892 -30.48429 -30.19437 -29.05094 -26.03225 -25.38723 -24.18502 -23.64056 -22.14337 -20.57211 -19.88382 -19.82232 -18.95009 -18.67997 -18.56309 -17.40642 -17.34354 -16.24679 -15.99676 -15.95018 -15.53743 -15.24017 -14.96147 -14.87257 -14.32546 -14.13017 -14.01220 -13.77827 -13.72611 -13.61810 -13.50178 -13.31929 -13.21651 -13.16057 -13.04209 -13.02007 -12.73035 -12.64111 -12.41159 -11.84763 -11.64646 -11.49155 -11.40667 -11.32640 -11.02101 -10.75041 -10.15712 -8.27895 -6.32662 -1.46302 -0.96823 -0.77941 0.59199 0.80149 1.25185 1.39617 1.41003 1.52374 1.92657 2.00879 2.07348 2.37928 2.69263 2.90575 2.98563 3.07887 3.19538 3.54698 3.61551 3.77041 3.80391 3.98120 4.15734 4.24399 4.27897 4.31786 4.56409 4.60670 4.71081 4.76331 4.76966 4.82857 4.95840 5.09400 5.26961 5.34321 5.46650 5.63920 6.01464 6.26978 6.73631 6.75439 7.31830 8.88449 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.002920 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.980452 B = 9586.171868 C =10309.197539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.234 3.766 3 C -0.164 4.164 4 C 0.128 3.872 5 C -0.159 4.159 6 N -0.388 5.388 7 C 0.375 3.625 8 N -0.306 5.306 9 N -0.164 5.164 10 C -0.399 4.399 11 S 2.526 3.474 12 O -0.929 6.929 13 O -0.935 6.935 14 C -0.564 4.564 15 C -0.103 4.103 16 C -0.009 4.009 17 C -0.538 4.538 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.241 1.241 25 N -0.479 5.479 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.241 0.759 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.621 4.126 -0.746 33.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 C -0.186 4.186 4 C 0.016 3.984 5 C -0.215 4.215 6 N -0.071 5.071 7 C 0.022 3.978 8 N -0.160 5.160 9 N -0.011 5.011 10 C -0.737 4.737 11 S 2.700 3.300 12 O -0.925 6.925 13 O -0.931 6.931 14 C -0.700 4.700 15 C -0.142 4.142 16 C -0.048 4.048 17 C -0.576 4.576 18 H 0.057 0.943 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.164 1.164 25 N -0.197 5.197 26 H 0.136 0.864 27 H 0.151 0.849 28 H 0.105 0.895 29 H 0.257 0.743 30 H 0.138 0.862 31 H 0.079 0.921 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -33.221 2.642 -0.815 33.336 hybrid contribution 0.850 0.022 0.081 0.854 sum -32.371 2.664 -0.734 32.489 Atomic orbital electron populations 1.21205 0.81774 1.06955 1.06370 1.23257 1.00570 0.86051 0.83121 1.22539 0.89747 1.03591 1.02739 1.22008 0.95012 0.85894 0.95524 1.21851 1.01236 0.91812 1.06633 1.44554 1.06582 1.10287 1.45718 1.24135 0.91818 0.81921 0.99964 1.74860 0.94062 1.22119 1.24927 1.74123 1.15811 1.04144 1.07062 1.38116 1.02586 1.07856 1.25117 1.05646 0.74971 0.74620 0.74718 1.93585 1.84954 1.63933 1.50025 1.93584 1.85900 1.73467 1.40189 1.29983 1.10305 1.14253 1.15424 1.21328 0.91151 0.98125 1.03599 1.19545 0.91645 0.95561 0.98043 1.21502 0.91525 0.94634 1.49932 0.94282 1.25996 0.95226 1.03790 0.94229 1.70061 0.98710 1.38110 1.52134 0.85725 0.78793 0.79472 0.79147 1.19169 1.21212 1.16368 1.68101 0.99691 1.31273 1.20666 0.86421 0.84886 0.89483 0.74301 0.86227 0.92142 0.81902 0.81935 0.81879 0.90436 0.90232 0.94752 0.94970 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.09 10.19 71.24 0.73 0.64 16 2 C 0.23 2.73 6.83 43.15 0.29 3.02 16 3 C -0.16 -1.33 9.36 22.15 0.21 -1.12 16 4 C 0.13 2.26 6.82 41.23 0.28 2.54 16 5 C -0.16 -2.27 8.50 71.23 0.61 -1.67 16 6 N -0.39 -10.69 2.95 -345.67 -1.02 -11.71 16 7 C 0.38 11.40 9.03 261.43 2.36 13.76 16 8 N -0.31 -10.87 12.30 -59.70 -0.73 -11.61 16 9 N -0.16 -5.57 11.88 -57.44 -0.68 -6.25 16 10 C -0.40 -12.22 7.78 179.87 1.40 -10.83 16 11 S 2.53 72.49 3.86 -56.49 -0.22 72.27 16 12 O -0.93 -27.66 15.93 -127.65 -2.03 -29.69 16 13 O -0.94 -29.61 16.19 -127.65 -2.07 -31.68 16 14 C -0.56 -16.05 5.75 71.98 0.41 -15.64 16 15 C -0.10 -3.72 5.16 30.59 0.16 -3.56 16 16 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 17 C -0.54 -30.38 9.66 25.60 0.25 -30.13 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 19 C 0.00 0.27 5.47 84.66 0.46 0.73 16 20 N -0.95 -59.28 13.96 21.45 0.30 -58.99 16 21 Si 0.95 43.61 27.47 68.60 1.88 45.49 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 25 N -0.48 -11.21 10.40 -185.29 -1.93 -13.14 16 26 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.13 -0.87 8.09 -2.39 -0.02 -0.89 16 28 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.24 -1.17 8.06 -2.91 -0.02 -1.19 16 30 H 0.12 1.72 7.45 -2.39 -0.02 1.70 16 31 H 0.06 1.25 4.58 -2.39 -0.01 1.24 16 32 H 0.16 0.55 8.05 -2.39 -0.02 0.53 16 33 H 0.16 4.06 8.14 -2.39 -0.02 4.04 16 34 H 0.16 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.03 1.46 7.20 -2.39 -0.02 1.45 16 38 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -87.79 340.42 1.81 -85.98 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.03 Total: 1.85 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 7.28 Total: -42.53 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.06 Total: -101.69 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -4.10 Total: -61.37 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Atomic # 16 Polarization: 72.49 SS G_CDS: -0.22 Total: 72.27 kcal Total: -87.79 1.81 -85.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447381946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.234 kcal (2) G-P(sol) polarization free energy of solvation -87.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds