Wall clock time and date at job start Tue Mar 31 2020 13:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38377 * 119.86504 * 2 1 4 4 C 1.37978 * 120.17673 * 180.02562 * 3 2 1 5 5 C 1.39337 * 119.91020 * 359.97438 * 4 3 2 6 6 C 1.48384 * 120.13974 * 179.97438 * 5 4 3 7 7 N 1.30864 * 126.31718 * 0.02887 * 6 5 4 8 8 O 1.21274 * 110.32436 * 179.97438 * 7 6 5 9 9 C 1.34190 * 109.92295 * 0.02562 * 8 7 6 10 10 C 1.47877 * 126.55967 * 179.97438 * 9 8 7 11 11 C 1.39931 * 120.02531 * 180.27723 * 10 9 8 12 12 C 1.38328 * 120.35426 * 180.25945 * 11 10 9 13 13 C 1.37745 * 120.41117 * 359.75950 * 12 11 10 14 14 C 1.40758 * 120.03911 * 359.97438 * 13 12 11 15 15 C 1.41432 * 120.17775 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99912 * 155.18737 * 15 14 13 17 17 C 1.39928 * 120.00034 * 335.18994 * 15 14 13 18 18 N 1.30826 * 120.00014 * 342.18416 * 17 15 14 19 19 Si 1.86804 * 120.00213 * 162.18683 * 17 15 14 20 20 H 1.48500 * 109.46939 * 94.65506 * 19 17 15 21 21 H 1.48501 * 109.47263 * 214.65619 * 19 17 15 22 22 H 1.48505 * 109.47023 * 334.65932 * 19 17 15 23 23 C 1.38979 * 120.02240 * 0.02562 * 10 9 8 24 24 N 1.31953 * 106.88141 * 0.23766 * 9 8 7 25 25 C 1.39526 * 119.72753 * 0.25411 * 5 4 3 26 26 F 1.35095 * 120.08824 * 179.74724 * 25 5 4 27 27 C 1.38226 * 119.86661 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47010 * 89.99788 * 1 2 3 29 29 H 1.09000 * 109.46747 * 209.99945 * 1 2 3 30 30 H 1.09001 * 109.46801 * 329.99920 * 1 2 3 31 31 H 1.08004 * 119.90964 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.04357 * 180.02562 * 4 3 2 33 33 H 1.08002 * 119.81606 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.79005 * 179.74760 * 12 11 10 35 35 H 1.08003 * 119.98209 * 179.97438 * 13 12 11 36 36 H 0.97006 * 119.99873 * 180.02562 * 18 17 15 37 37 H 1.07996 * 120.20211 * 0.02562 * 23 10 9 38 38 H 1.08001 * 119.95154 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2000 0.0000 4 6 3.5758 1.2075 -0.0005 5 6 4.2772 0.0035 -0.0005 6 6 5.7610 0.0057 -0.0017 7 7 6.5345 1.0612 -0.0022 8 8 7.7008 0.7287 -0.0026 9 6 7.7947 -0.6099 -0.0030 10 6 9.0412 -1.4054 -0.0040 11 6 8.9797 -2.8034 -0.0101 12 6 10.1414 -3.5543 -0.0057 13 6 11.3718 -2.9351 -0.0003 14 6 11.4535 -1.5299 0.0002 15 6 12.7154 -0.8911 0.0063 16 1 12.8156 0.1103 -0.3856 17 6 13.8340 -1.5566 0.5200 18 7 13.6763 -2.5966 1.2979 19 14 15.5524 -0.9599 0.0954 20 1 16.0375 -0.0480 1.1624 21 1 16.4676 -2.1242 -0.0147 22 1 15.5182 -0.2330 -1.1991 23 6 10.2748 -0.7652 -0.0043 24 7 6.5620 -1.0805 -0.0079 25 6 3.5785 -1.2042 -0.0054 26 9 4.2511 -2.3758 -0.0106 27 6 2.1953 -1.1987 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6524 2.1332 0.0004 32 1 4.1115 2.1454 -0.0001 33 1 8.0199 -3.2986 -0.0144 34 1 10.0832 -4.6327 -0.0064 35 1 12.2744 -3.5282 0.0035 36 1 14.4518 -3.0577 1.6543 37 1 10.3270 0.3135 -0.0033 38 1 1.6524 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000460144073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:38 Heat of formation + Delta-G solvation = 47.066967 kcal Electronic energy + Delta-G solvation = -25069.048092 eV Core-core repulsion = 21178.991428 eV Total energy + Delta-G solvation = -3890.056664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95568 -46.54481 -40.30072 -39.56034 -37.08309 -35.85440 -34.56123 -33.15292 -31.91774 -31.75684 -30.86619 -28.55260 -27.29964 -25.63230 -24.79861 -23.74108 -22.96364 -22.47538 -21.72365 -19.78228 -19.20454 -18.60373 -17.98691 -17.49629 -17.23207 -17.10651 -16.72042 -16.50880 -16.14991 -15.41877 -15.22059 -14.84162 -14.60456 -14.48939 -14.33065 -14.22837 -13.79520 -13.70749 -13.56843 -13.22282 -13.09839 -12.85088 -12.73337 -12.68318 -12.46957 -12.41391 -12.23600 -12.08918 -11.81641 -11.59285 -11.45499 -11.02843 -10.02859 -9.67720 -9.55581 -9.31178 -8.69049 -6.40688 -0.65604 -0.26688 0.08166 0.87903 0.96842 1.41173 1.43972 1.54892 1.59912 1.62055 2.21621 2.31213 2.48801 2.67867 2.75063 3.11128 3.57373 3.60598 3.78683 3.85665 4.14921 4.17022 4.31741 4.37017 4.51695 4.60388 4.63078 4.70888 4.88864 4.90729 4.96568 4.98361 5.01538 5.09169 5.17138 5.26864 5.27194 5.40459 5.41213 5.73725 5.76215 5.92525 5.96919 6.16368 6.54546 6.83969 6.85878 6.94061 8.29268 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.034187 B = 0.002413 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.830645 B =11602.321591 C =12331.030978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.028 4.028 3 C -0.124 4.124 4 C -0.056 4.056 5 C -0.095 4.095 6 C 0.207 3.793 7 N -0.395 5.395 8 O 0.068 5.932 9 C 0.259 3.741 10 C -0.026 4.026 11 C -0.176 4.176 12 C -0.105 4.105 13 C -0.150 4.150 14 C 0.078 3.922 15 C -0.491 4.491 16 H 0.082 0.918 17 C 0.038 3.962 18 N -0.820 5.820 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.190 4.190 24 N -0.492 5.492 25 C 0.121 3.879 26 F -0.135 7.135 27 C -0.159 4.159 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.292 0.708 37 H 0.111 0.889 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.996 4.181 -1.975 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.029 4.029 3 C -0.142 4.142 4 C -0.076 4.076 5 C -0.098 4.098 6 C -0.063 4.063 7 N -0.107 5.107 8 O 0.012 5.988 9 C 0.043 3.957 10 C -0.029 4.029 11 C -0.197 4.197 12 C -0.123 4.123 13 C -0.171 4.171 14 C 0.076 3.924 15 C -0.520 4.520 16 H 0.100 0.900 17 C -0.178 4.178 18 N -0.445 5.445 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.189 1.189 22 H -0.182 1.182 23 C -0.211 4.211 24 N -0.225 5.225 25 C 0.100 3.900 26 F -0.114 7.114 27 C -0.177 4.177 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.191 0.809 32 H 0.159 0.841 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.450 4.482 -1.829 21.989 hybrid contribution 1.677 -0.203 0.050 1.690 sum -19.773 4.278 -1.779 20.308 Atomic orbital electron populations 1.20989 0.86964 1.04969 1.04307 1.20403 0.98655 0.91102 0.92740 1.21432 0.92051 0.99994 1.00695 1.21244 0.95481 0.95565 0.95281 1.17693 0.84523 0.95341 1.12193 1.24173 0.97498 0.84060 1.00579 1.74735 0.89124 1.23132 1.23693 1.85326 1.22084 1.24740 1.66640 1.26875 0.94892 0.80913 0.92972 1.17144 0.85285 0.91948 1.08488 1.20613 0.98365 0.90815 1.09896 1.20921 0.91754 0.99494 1.00164 1.21615 0.96999 0.94892 1.03562 1.17810 0.92646 0.92524 0.89449 1.19820 0.92697 1.02463 1.37038 0.90032 1.26727 1.05320 0.94036 0.91689 1.69827 1.34768 1.17847 1.22075 0.85183 0.75736 0.78979 0.79818 1.18926 1.18919 1.18236 1.21222 0.90829 0.98753 1.10333 1.72391 0.99109 1.28290 1.22736 1.18031 0.91201 0.79905 1.00883 1.91552 1.81007 1.45529 1.93281 1.21299 0.89857 1.01699 1.04873 0.88900 0.89909 0.89002 0.80884 0.84057 0.86467 0.85185 0.86582 0.89725 0.87096 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 71.24 0.71 0.07 16 2 C -0.03 -0.38 5.88 -19.83 -0.12 -0.50 16 3 C -0.12 -1.80 9.68 22.24 0.22 -1.59 16 4 C -0.06 -1.26 9.69 22.47 0.22 -1.04 16 5 C -0.09 -2.90 5.88 -20.00 -0.12 -3.02 16 6 C 0.21 8.00 7.78 137.34 1.07 9.06 16 7 N -0.40 -15.54 11.84 -57.75 -0.68 -16.22 16 8 O 0.07 2.85 11.10 69.77 0.77 3.63 16 9 C 0.26 11.37 8.00 87.31 0.70 12.07 16 10 C -0.03 -1.21 5.87 -20.14 -0.12 -1.33 16 11 C -0.18 -7.85 9.71 22.70 0.22 -7.63 16 12 C -0.11 -4.66 10.01 22.17 0.22 -4.44 16 13 C -0.15 -7.47 8.69 22.77 0.20 -7.27 16 14 C 0.08 4.05 5.57 -21.32 -0.12 3.93 16 15 C -0.49 -25.26 9.05 23.47 0.21 -25.05 16 16 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 17 C 0.04 1.83 5.13 85.25 0.44 2.27 16 18 N -0.82 -40.59 10.97 21.82 0.24 -40.35 16 19 Si 0.98 36.44 29.59 68.60 2.03 38.47 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 C -0.19 -9.25 9.47 23.00 0.22 -9.03 16 24 N -0.49 -21.08 9.92 -302.31 -3.00 -24.08 16 25 C 0.12 3.44 7.28 22.60 0.16 3.60 16 26 F -0.14 -4.62 15.80 44.97 0.71 -3.91 16 27 C -0.16 -2.98 9.66 22.29 0.22 -2.77 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 30 H 0.09 0.24 8.08 -2.39 -0.02 0.22 16 31 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.14 3.08 7.87 -2.91 -0.02 3.05 16 33 H 0.12 4.95 7.86 -2.91 -0.02 4.93 16 34 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.12 5.90 6.17 -2.91 -0.02 5.88 16 36 H 0.29 12.99 8.30 -92.70 -0.77 12.22 16 37 H 0.11 5.15 7.93 -2.91 -0.02 5.13 16 38 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -62.47 342.40 5.51 -56.96 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 1.11 Total: 18.18 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.33 Total: -32.67 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -3.44 Total: -80.65 kcal Atomic # 8 Polarization: 2.85 SS G_CDS: 0.77 Total: 3.63 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.71 Total: -3.91 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -62.47 5.51 -56.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000460144073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.024 kcal (2) G-P(sol) polarization free energy of solvation -62.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds