Wall clock time and date at job start Tue Mar 31 2020 13:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38271 * 119.95228 * 2 1 4 4 C 1.38326 * 120.26800 * 180.02562 * 3 2 1 5 5 C 1.38034 * 120.17955 * 359.71858 * 4 3 2 6 6 C 1.39292 * 119.90084 * 0.55325 * 5 4 3 7 7 C 1.48384 * 120.13545 * 179.72065 * 6 5 4 8 8 N 1.30870 * 126.32448 * 179.70024 * 7 6 5 9 9 O 1.21270 * 110.32456 * 180.02562 * 8 7 6 10 10 C 1.34200 * 109.92512 * 0.02562 * 9 8 7 11 11 C 1.47873 * 126.55542 * 180.02562 * 10 9 8 12 12 C 1.39931 * 120.02125 * 179.70141 * 11 10 9 13 13 C 1.38331 * 120.35573 * 179.71194 * 12 11 10 14 14 C 1.37744 * 120.40925 * 0.56310 * 13 12 11 15 15 C 1.40759 * 120.04014 * 359.71774 * 14 13 12 16 16 C 1.41428 * 120.18093 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00029 * 24.47751 * 16 15 14 18 18 C 1.39931 * 120.00060 * 204.47892 * 16 15 14 19 19 N 1.30826 * 120.00113 * 17.89150 * 18 16 15 20 20 Si 1.86806 * 120.00156 * 197.89122 * 18 16 15 21 21 H 1.48497 * 109.46990 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47016 * 119.99826 * 20 18 16 23 23 H 1.48497 * 109.47173 * 240.00154 * 20 18 16 24 24 C 1.38980 * 120.02637 * 359.97015 * 11 10 9 25 25 N 1.31954 * 106.88144 * 359.97438 * 10 9 8 26 26 C 1.38267 * 119.95221 * 180.02562 * 2 1 3 27 27 F 1.35106 * 120.08924 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47424 * 269.98168 * 1 2 3 29 29 H 1.09002 * 109.47365 * 29.97804 * 1 2 3 30 30 H 1.08994 * 109.47378 * 149.97879 * 1 2 3 31 31 H 1.07997 * 119.86885 * 0.04142 * 3 2 1 32 32 H 1.08001 * 119.91108 * 180.02562 * 4 3 2 33 33 H 1.07991 * 120.04873 * 180.28484 * 5 4 3 34 34 H 1.08003 * 119.81830 * 359.97438 * 12 11 10 35 35 H 1.08002 * 119.79394 * 180.25650 * 13 12 11 36 36 H 1.08004 * 119.98416 * 179.69710 * 14 13 12 37 37 H 0.97006 * 120.00302 * 179.97438 * 19 18 16 38 38 H 1.07995 * 120.20298 * 0.03057 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5806 1.2057 -0.0005 5 6 4.2811 0.0163 0.0048 6 6 3.5930 -1.1948 -0.0009 7 6 4.3408 -2.4765 -0.0015 8 7 3.8208 -3.6774 -0.0011 9 8 4.6970 -4.5158 -0.0013 10 6 5.8997 -3.9204 -0.0013 11 6 7.2160 -4.5942 -0.0020 12 6 8.3912 -3.8348 -0.0082 13 6 9.6263 -4.4578 -0.0030 14 6 9.7137 -5.8325 -0.0032 15 6 8.5423 -6.6130 -0.0028 16 6 8.6286 -8.0247 -0.0036 17 1 9.5114 -8.5120 0.3831 18 6 7.5701 -8.7901 -0.5054 19 7 6.6722 -8.2368 -1.2794 20 14 7.4391 -10.6020 -0.0701 21 1 8.5703 -10.9817 0.8139 22 1 6.1558 -10.8502 0.6348 23 1 7.4867 -11.4142 -1.3123 24 6 7.2868 -5.9822 -0.0021 25 7 5.6829 -2.6188 -0.0017 26 6 2.1973 -1.1980 -0.0005 27 9 1.5227 -2.3685 -0.0005 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6545 2.1316 0.0007 32 1 4.1140 2.1448 -0.0001 33 1 5.3609 0.0247 0.0090 34 1 8.3337 -2.7563 -0.0129 35 1 10.5276 -3.8628 -0.0036 36 1 10.6815 -6.3118 -0.0040 37 1 5.9386 -8.7674 -1.6276 38 1 6.3823 -6.5723 -0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000485962123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:45 Heat of formation + Delta-G solvation = 59.932904 kcal Electronic energy + Delta-G solvation = -25412.452366 eV Core-core repulsion = 21522.953610 eV Total energy + Delta-G solvation = -3889.498755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.91901 -44.92122 -39.30370 -37.76782 -35.53610 -34.01460 -33.20310 -32.42563 -30.66957 -29.85171 -29.16322 -27.26095 -25.54554 -24.58946 -23.77730 -22.19676 -21.61669 -20.79217 -20.18348 -17.89006 -17.55311 -17.50583 -16.90169 -16.52617 -15.75586 -15.65511 -15.38096 -14.83753 -14.65847 -14.33782 -13.66662 -13.62886 -13.48478 -13.35940 -12.89759 -12.75706 -12.61083 -12.49895 -12.03319 -11.97648 -11.78640 -11.54974 -11.37629 -11.30222 -11.19662 -10.93248 -10.67083 -10.54433 -10.11286 -9.91787 -9.82141 -9.30341 -8.88106 -8.73689 -7.65917 -7.62700 -6.91670 -4.53010 0.57657 0.95927 1.35227 2.44370 2.68107 3.01364 3.03493 3.08171 3.19329 3.35414 3.51988 3.62881 3.84381 4.04015 4.25306 4.46091 4.49807 4.68093 4.87942 4.99034 5.23778 5.31888 5.39500 5.43459 5.48990 5.72462 5.83541 5.91201 6.02162 6.09642 6.11568 6.16566 6.29710 6.38389 6.60937 6.63189 6.82615 6.91328 7.08344 7.20844 7.56352 7.69498 7.79355 7.98713 8.35151 8.59075 8.67351 8.70129 10.03409 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.002966 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.529242 B = 9437.908396 C =10778.326393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.127 4.127 3 C -0.081 4.081 4 C -0.130 4.130 5 C -0.055 4.055 6 C -0.038 4.038 7 C 0.194 3.806 8 N -0.379 5.379 9 O 0.086 5.914 10 C 0.271 3.729 11 C -0.034 4.034 12 C -0.187 4.187 13 C -0.097 4.097 14 C -0.199 4.199 15 C 0.101 3.899 16 C -0.457 4.457 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.788 5.788 20 Si 0.910 3.090 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.112 4.112 25 N -0.489 5.489 26 C 0.127 3.873 27 F -0.119 7.119 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.285 0.715 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 14.141 1.790 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.127 4.127 3 C -0.100 4.100 4 C -0.148 4.148 5 C -0.075 4.075 6 C -0.041 4.041 7 C -0.076 4.076 8 N -0.086 5.086 9 O 0.025 5.975 10 C 0.057 3.943 11 C -0.037 4.037 12 C -0.208 4.208 13 C -0.115 4.115 14 C -0.220 4.220 15 C 0.098 3.902 16 C -0.486 4.486 17 H 0.102 0.898 18 C -0.145 4.145 19 N -0.413 5.413 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.133 4.133 25 N -0.222 5.222 26 C 0.106 3.894 27 F -0.097 7.097 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.027 14.303 1.639 16.993 hybrid contribution -0.121 -1.195 0.012 1.201 sum -9.148 13.108 1.651 16.069 Atomic orbital electron populations 1.20716 0.89725 1.03480 1.02944 1.19851 0.97243 0.91415 1.04237 1.21043 0.94217 0.96933 0.97831 1.21145 0.94024 0.98169 1.01495 1.21170 1.01266 0.89794 0.95278 1.17430 0.89979 0.89751 1.06946 1.23483 0.88034 0.92809 1.03261 1.74971 1.13205 0.99188 1.21256 1.85415 1.12999 1.33342 1.65730 1.26945 0.89574 0.85876 0.91932 1.17207 0.83727 0.93240 1.09523 1.20319 0.90702 0.97846 1.11934 1.20478 0.95576 0.94640 1.00819 1.21210 0.97604 0.92986 1.10168 1.17487 0.90146 0.93559 0.88959 1.19616 1.02490 0.90764 1.35698 0.89799 1.25959 0.94469 1.01573 0.92455 1.69768 1.10963 1.38892 1.21629 0.86222 0.79550 0.81435 0.79391 1.18265 1.19501 1.19867 1.21610 0.99832 0.90431 1.01439 1.72186 1.11820 1.14772 1.23462 1.17520 0.88458 0.81776 1.01684 1.91563 1.79627 1.45421 1.93139 0.90699 0.90783 0.91044 0.84690 0.84558 0.83625 0.87641 0.88160 0.88137 0.90382 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.83 36.01 0.35 -0.59 16 2 C -0.13 -1.41 5.88 -104.60 -0.62 -2.02 16 3 C -0.08 -0.73 9.69 -39.54 -0.38 -1.11 16 4 C -0.13 -1.24 10.03 -39.62 -0.40 -1.63 16 5 C -0.06 -0.71 9.70 -39.26 -0.38 -1.09 16 6 C -0.04 -0.62 5.88 -104.83 -0.62 -1.24 16 7 C 0.19 3.84 7.78 -156.28 -1.22 2.62 16 8 N -0.38 -8.10 10.85 31.20 0.34 -7.76 16 9 O 0.09 1.92 11.10 16.66 0.18 2.10 16 10 C 0.27 5.99 8.00 -13.79 -0.11 5.88 16 11 C -0.03 -0.78 5.87 -105.04 -0.62 -1.40 16 12 C -0.19 -3.99 9.71 -38.91 -0.38 -4.37 16 13 C -0.10 -1.99 10.01 -39.73 -0.40 -2.39 16 14 C -0.20 -4.45 9.78 -38.81 -0.38 -4.83 16 15 C 0.10 2.50 5.57 -106.87 -0.60 1.90 16 16 C -0.46 -11.26 9.05 -37.73 -0.34 -11.61 16 17 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 18 C 0.07 1.77 5.14 -17.35 -0.09 1.68 16 19 N -0.79 -19.49 10.96 55.55 0.61 -18.88 16 20 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.11 -2.75 8.37 -38.45 -0.32 -3.07 16 25 N -0.49 -10.10 10.93 -10.22 -0.11 -10.21 16 26 C 0.13 1.89 7.22 -39.07 -0.28 1.61 16 27 F -0.12 -2.00 15.02 2.25 0.03 -1.97 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.07 0.66 7.64 -51.93 -0.40 0.26 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.15 1.83 7.87 -52.49 -0.41 1.42 16 34 H 0.11 2.10 7.86 -52.48 -0.41 1.68 16 35 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.10 2.07 8.06 -52.48 -0.42 1.64 16 37 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 38 H 0.13 3.38 6.03 -52.49 -0.32 3.07 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -27.54 341.33 -9.22 -36.76 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.62 Total: 3.69 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -6.77 Total: -21.66 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.84 Total: -36.85 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.18 Total: 2.10 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.03 Total: -1.97 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.54 -9.22 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000485962123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.697 kcal (2) G-P(sol) polarization free energy of solvation -27.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds