Wall clock time and date at job start Tue Mar 31 2020 13:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38271 * 119.95228 * 2 1 4 4 C 1.38326 * 120.26800 * 180.02562 * 3 2 1 5 5 C 1.38034 * 120.17955 * 359.71858 * 4 3 2 6 6 C 1.39292 * 119.90084 * 0.55325 * 5 4 3 7 7 C 1.48384 * 120.13545 * 179.72065 * 6 5 4 8 8 N 1.30870 * 126.32448 * 179.70024 * 7 6 5 9 9 O 1.21270 * 110.32456 * 180.02562 * 8 7 6 10 10 C 1.34200 * 109.92512 * 0.02562 * 9 8 7 11 11 C 1.47873 * 126.55542 * 180.02562 * 10 9 8 12 12 C 1.39931 * 120.02125 * 179.70141 * 11 10 9 13 13 C 1.38331 * 120.35573 * 179.71194 * 12 11 10 14 14 C 1.37744 * 120.40925 * 0.56310 * 13 12 11 15 15 C 1.40759 * 120.04014 * 359.71774 * 14 13 12 16 16 C 1.41428 * 120.18093 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00029 * 24.47751 * 16 15 14 18 18 C 1.39931 * 120.00060 * 204.47892 * 16 15 14 19 19 N 1.30826 * 120.00113 * 17.89150 * 18 16 15 20 20 Si 1.86806 * 120.00156 * 197.89122 * 18 16 15 21 21 H 1.48497 * 109.46990 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47016 * 119.99826 * 20 18 16 23 23 H 1.48497 * 109.47173 * 240.00154 * 20 18 16 24 24 C 1.38980 * 120.02637 * 359.97015 * 11 10 9 25 25 N 1.31954 * 106.88144 * 359.97438 * 10 9 8 26 26 C 1.38267 * 119.95221 * 180.02562 * 2 1 3 27 27 F 1.35106 * 120.08924 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47424 * 269.98168 * 1 2 3 29 29 H 1.09002 * 109.47365 * 29.97804 * 1 2 3 30 30 H 1.08994 * 109.47378 * 149.97879 * 1 2 3 31 31 H 1.07997 * 119.86885 * 0.04142 * 3 2 1 32 32 H 1.08001 * 119.91108 * 180.02562 * 4 3 2 33 33 H 1.07991 * 120.04873 * 180.28484 * 5 4 3 34 34 H 1.08003 * 119.81830 * 359.97438 * 12 11 10 35 35 H 1.08002 * 119.79394 * 180.25650 * 13 12 11 36 36 H 1.08004 * 119.98416 * 179.69710 * 14 13 12 37 37 H 0.97006 * 120.00302 * 179.97438 * 19 18 16 38 38 H 1.07995 * 120.20298 * 0.03057 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5806 1.2057 -0.0005 5 6 4.2811 0.0163 0.0048 6 6 3.5930 -1.1948 -0.0009 7 6 4.3408 -2.4765 -0.0015 8 7 3.8208 -3.6774 -0.0011 9 8 4.6970 -4.5158 -0.0013 10 6 5.8997 -3.9204 -0.0013 11 6 7.2160 -4.5942 -0.0020 12 6 8.3912 -3.8348 -0.0082 13 6 9.6263 -4.4578 -0.0030 14 6 9.7137 -5.8325 -0.0032 15 6 8.5423 -6.6130 -0.0028 16 6 8.6286 -8.0247 -0.0036 17 1 9.5114 -8.5120 0.3831 18 6 7.5701 -8.7901 -0.5054 19 7 6.6722 -8.2368 -1.2794 20 14 7.4391 -10.6020 -0.0701 21 1 8.5703 -10.9817 0.8139 22 1 6.1558 -10.8502 0.6348 23 1 7.4867 -11.4142 -1.3123 24 6 7.2868 -5.9822 -0.0021 25 7 5.6829 -2.6188 -0.0017 26 6 2.1973 -1.1980 -0.0005 27 9 1.5227 -2.3685 -0.0005 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6545 2.1316 0.0007 32 1 4.1140 2.1448 -0.0001 33 1 5.3609 0.0247 0.0090 34 1 8.3337 -2.7563 -0.0129 35 1 10.5276 -3.8628 -0.0036 36 1 10.6815 -6.3118 -0.0040 37 1 5.9386 -8.7674 -1.6276 38 1 6.3823 -6.5723 -0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000485962123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:44 Heat of formation + Delta-G solvation = 46.524429 kcal Electronic energy + Delta-G solvation = -25413.033801 eV Core-core repulsion = 21522.953610 eV Total energy + Delta-G solvation = -3890.080190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.07444 -46.55122 -40.23135 -39.54007 -37.06447 -35.74724 -34.56498 -33.59523 -31.86783 -31.61145 -30.78291 -28.06987 -27.33728 -25.93690 -25.36021 -23.59350 -22.76780 -22.38608 -21.69818 -19.54935 -19.20826 -18.66758 -18.39913 -17.70288 -17.08417 -16.88267 -16.76543 -16.53552 -16.13513 -15.53964 -15.25483 -14.63615 -14.53957 -14.42284 -14.35464 -14.27736 -13.79137 -13.67470 -13.64761 -13.33514 -13.20637 -12.85278 -12.74115 -12.60047 -12.55544 -12.43104 -12.19519 -12.10873 -11.74510 -11.64970 -11.54977 -11.05531 -9.89519 -9.75080 -9.47083 -9.37697 -8.69320 -6.40121 -0.62181 -0.26429 0.06356 0.92285 0.99406 1.39667 1.41776 1.55110 1.56722 1.68365 2.19550 2.26453 2.51634 2.68460 2.78275 3.09255 3.60296 3.61610 3.68135 4.00281 4.08615 4.21600 4.31644 4.41001 4.54841 4.56878 4.65736 4.71410 4.77145 4.87867 4.89820 5.04020 5.08405 5.14415 5.16729 5.26397 5.28188 5.29891 5.41969 5.76774 5.78721 5.91479 5.98826 6.20645 6.52168 6.85352 6.86222 6.95355 8.27761 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.002966 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.529242 B = 9437.908396 C =10778.326393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.124 4.124 3 C -0.059 4.059 4 C -0.113 4.113 5 C -0.061 4.061 6 C -0.081 4.081 7 C 0.205 3.795 8 N -0.403 5.403 9 O 0.061 5.939 10 C 0.259 3.741 11 C -0.041 4.041 12 C -0.181 4.181 13 C -0.090 4.090 14 C -0.202 4.202 15 C 0.073 3.927 16 C -0.488 4.488 17 H 0.089 0.911 18 C 0.034 3.966 19 N -0.824 5.824 20 Si 0.980 3.020 21 H -0.251 1.251 22 H -0.271 1.271 23 H -0.267 1.267 24 C -0.138 4.138 25 N -0.485 5.485 26 C 0.096 3.904 27 F -0.142 7.142 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.289 0.711 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 17.623 2.062 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.078 4.078 4 C -0.131 4.131 5 C -0.081 4.081 6 C -0.084 4.084 7 C -0.066 4.066 8 N -0.115 5.115 9 O 0.006 5.994 10 C 0.043 3.957 11 C -0.044 4.044 12 C -0.202 4.202 13 C -0.108 4.108 14 C -0.222 4.222 15 C 0.071 3.929 16 C -0.517 4.517 17 H 0.107 0.893 18 C -0.181 4.181 19 N -0.450 5.450 20 Si 0.801 3.199 21 H -0.175 1.175 22 H -0.196 1.196 23 H -0.192 1.192 24 C -0.160 4.160 25 N -0.218 5.218 26 C 0.075 3.925 27 F -0.120 7.120 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.201 0.799 32 H 0.196 0.804 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.983 17.765 1.912 19.999 hybrid contribution -0.165 -1.944 -0.074 1.952 sum -9.148 15.822 1.839 18.368 Atomic orbital electron populations 1.20818 0.87812 1.04364 1.03880 1.20281 0.98712 0.90667 1.02844 1.21647 0.94179 0.97713 0.94216 1.21629 0.94495 0.98223 0.98723 1.21338 1.01402 0.89920 0.95468 1.17720 0.90643 0.89078 1.10961 1.24245 0.87841 0.93850 1.00627 1.74960 1.13178 0.99905 1.23440 1.85391 1.13276 1.34133 1.66609 1.27000 0.89523 0.86511 0.92619 1.17389 0.84798 0.92935 1.09263 1.20650 0.90436 0.98710 1.10369 1.20894 0.96778 0.94261 0.98833 1.21509 0.97541 0.93910 1.09245 1.17845 0.91005 0.94332 0.89705 1.19884 1.03471 0.91286 1.37025 0.89336 1.26789 0.93762 1.05801 0.91778 1.69848 1.11723 1.40607 1.22792 0.85175 0.79444 0.76055 0.79229 1.17452 1.19552 1.19156 1.21448 0.99298 0.91161 1.04099 1.72168 1.12492 1.13819 1.23370 1.17983 0.88341 0.82457 1.03705 1.91498 1.79946 1.47000 1.93593 0.89646 0.87532 0.92554 0.79856 0.80375 0.83860 0.85786 0.83906 0.86372 0.90071 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.83 71.24 0.70 -0.88 16 2 C -0.12 -2.44 5.88 -19.85 -0.12 -2.56 16 3 C -0.06 -0.76 9.69 22.30 0.22 -0.55 16 4 C -0.11 -1.64 10.03 22.24 0.22 -1.41 16 5 C -0.06 -1.47 9.70 22.47 0.22 -1.25 16 6 C -0.08 -2.64 5.88 -20.00 -0.12 -2.76 16 7 C 0.20 8.45 7.78 137.34 1.07 9.52 16 8 N -0.40 -18.43 10.85 -57.73 -0.63 -19.06 16 9 O 0.06 2.94 11.10 69.67 0.77 3.71 16 10 C 0.26 12.03 8.00 87.31 0.70 12.73 16 11 C -0.04 -1.96 5.87 -20.14 -0.12 -2.08 16 12 C -0.18 -7.62 9.71 22.70 0.22 -7.40 16 13 C -0.09 -3.54 10.01 22.17 0.22 -3.31 16 14 C -0.20 -8.95 9.78 22.77 0.22 -8.72 16 15 C 0.07 3.76 5.57 -21.32 -0.12 3.65 16 16 C -0.49 -24.89 9.05 23.47 0.21 -24.68 16 17 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 18 C 0.03 1.68 5.14 85.25 0.44 2.11 16 19 N -0.82 -43.04 10.96 21.82 0.24 -42.80 16 20 Si 0.98 37.57 29.60 68.60 2.03 39.60 16 21 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 24 C -0.14 -7.21 8.37 23.00 0.19 -7.02 16 25 N -0.48 -20.65 10.93 -302.27 -3.31 -23.96 16 26 C 0.10 2.87 7.22 22.60 0.16 3.04 16 27 F -0.14 -5.02 15.02 44.97 0.68 -4.35 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.06 0.98 7.64 -2.39 -0.02 0.96 16 31 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.14 3.42 7.87 -2.91 -0.02 3.39 16 34 H 0.12 4.73 7.86 -2.91 -0.02 4.71 16 35 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 38 H 0.11 6.11 6.03 -2.91 -0.02 6.09 16 Total: -1.00 -65.72 341.33 5.23 -60.50 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.11 Total: 17.95 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 4.32 Total: -31.58 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.69 Total: -85.82 kcal Atomic # 8 Polarization: 2.94 SS G_CDS: 0.77 Total: 3.71 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.68 Total: -4.35 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -65.72 5.23 -60.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000485962123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.020 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds