Wall clock time and date at job start Tue Mar 31 2020 13:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35691 * 120.48661 * 2 1 4 4 C 1.40171 * 119.27365 * 179.72922 * 3 2 1 5 5 N 1.31256 * 120.35592 * 0.24256 * 4 3 2 6 6 C 1.33992 * 120.88301 * 359.97438 * 5 4 3 7 7 N 1.32496 * 132.34395 * 180.02562 * 6 5 4 8 8 C 1.33477 * 109.75780 * 180.02562 * 7 6 5 9 9 C 1.48080 * 125.32570 * 179.97438 * 8 7 6 10 10 O 1.21525 * 119.99799 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00121 * 0.03845 * 9 8 7 12 12 C 1.39385 * 120.00080 * 175.13888 * 11 9 8 13 13 C 1.38625 * 119.57899 * 184.93292 * 12 11 9 14 14 C 1.40810 * 118.78576 * 179.71493 * 13 12 11 15 15 C 1.41546 * 120.99182 * 180.29992 * 14 13 12 16 16 H 1.07996 * 119.99860 * 203.89892 * 15 14 13 17 17 C 1.40029 * 120.00035 * 23.89590 * 15 14 13 18 18 N 1.30741 * 119.99844 * 16.82729 * 17 15 14 19 19 Si 1.86801 * 120.00024 * 196.82177 * 17 15 14 20 20 H 1.48497 * 109.47346 * 90.00250 * 19 17 15 21 21 H 1.48504 * 109.46992 * 210.00434 * 19 17 15 22 22 H 1.48507 * 109.47171 * 330.00212 * 19 17 15 23 23 C 1.41180 * 118.01078 * 0.54290 * 14 13 12 24 24 C 1.37588 * 119.02034 * 359.73188 * 23 14 13 25 25 N 1.32085 * 121.11061 * 359.97438 * 24 23 14 26 26 N 1.32005 * 109.34495 * 359.97438 * 8 7 6 27 27 N 1.36164 * 120.48890 * 180.20409 * 2 1 3 28 28 H 1.08992 * 109.47109 * 269.79363 * 1 2 3 29 29 H 1.09001 * 109.47028 * 29.79746 * 1 2 3 30 30 H 1.08998 * 109.46691 * 149.78831 * 1 2 3 31 31 H 1.07996 * 120.35998 * 359.94804 * 3 2 1 32 32 H 1.08001 * 119.81952 * 180.26279 * 4 3 2 33 33 H 0.97005 * 120.00467 * 355.13629 * 11 9 8 34 34 H 1.07997 * 120.60591 * 359.97438 * 13 12 11 35 35 H 0.97008 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.48605 * 179.75697 * 23 14 13 37 37 H 1.07991 * 119.44507 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1693 0.0000 4 6 3.5968 1.1396 0.0058 5 7 4.2360 -0.0067 0.0063 6 6 3.5666 -1.1675 0.0019 7 7 3.9690 -2.4298 0.0018 8 6 2.9093 -3.2413 -0.0043 9 6 2.9639 -4.7211 -0.0068 10 8 1.9346 -5.3671 -0.0129 11 7 4.1551 -5.3514 -0.0021 12 6 4.2080 -6.7407 0.0978 13 6 5.4371 -7.3726 0.2054 14 6 5.4709 -8.7763 0.3115 15 6 6.6996 -9.4690 0.4299 16 1 6.7669 -10.5043 0.1299 17 6 7.8278 -8.8119 0.9359 18 7 7.6906 -7.6923 1.5969 19 14 9.5290 -9.5350 0.6665 20 1 10.0966 -9.0068 -0.5999 21 1 10.4120 -9.1585 1.7997 22 1 9.4309 -11.0146 0.5858 23 6 4.2428 -9.4725 0.2909 24 6 3.0726 -8.7583 0.1748 25 7 3.0833 -7.4407 0.0836 26 7 1.8049 -2.5182 -0.0077 27 7 2.1979 -1.1734 -0.0042 28 1 -0.3633 -0.0037 1.0276 29 1 -0.3633 0.8918 -0.5107 30 1 -0.3632 -0.8881 -0.5171 31 1 1.6693 2.1125 -0.0008 32 1 4.1535 2.0651 0.0101 33 1 4.9757 -4.8383 -0.0682 34 1 6.3519 -6.7986 0.2119 35 1 8.4722 -7.2372 1.9478 36 1 4.2223 -10.5497 0.3656 37 1 2.1293 -9.2838 0.1588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532435109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:31 Heat of formation + Delta-G solvation = 148.710265 kcal Electronic energy + Delta-G solvation = -25394.727963 eV Core-core repulsion = 21561.291596 eV Total energy + Delta-G solvation = -3833.436367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.17028 -39.86233 -38.91194 -37.63641 -35.59542 -34.42892 -33.81022 -32.11440 -31.17698 -30.55983 -28.94196 -28.81367 -26.02775 -25.44953 -24.48636 -22.51333 -21.96957 -21.24116 -19.87914 -18.85496 -18.36146 -17.58293 -17.22391 -17.01967 -16.02764 -15.66229 -15.23381 -14.80139 -14.58628 -14.23639 -14.18446 -13.96375 -13.81939 -13.68532 -13.06007 -12.92602 -12.91406 -12.84843 -12.60717 -12.33064 -11.77948 -11.43658 -11.22383 -10.90564 -10.50115 -10.38716 -10.32638 -10.18579 -10.00769 -9.85920 -9.77076 -9.36139 -9.06231 -8.02345 -7.80684 -7.07506 -6.81868 -4.60988 0.00129 0.33050 1.45039 1.69553 2.67025 2.79621 2.83124 3.01738 3.04103 3.07213 3.16331 3.25447 3.68053 3.70129 3.86228 3.89655 4.29851 4.50272 4.66701 4.73641 4.78896 4.84953 4.88214 5.27322 5.53076 5.66571 5.70928 5.75960 5.86233 5.99124 6.53147 6.61048 6.78669 6.93371 7.07184 7.09788 7.32568 7.40755 7.48276 7.76230 7.90627 8.14726 8.35528 8.62270 8.73355 8.76816 9.63748 10.07067 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002845 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.927109 B = 9840.606309 C =11241.142125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.206 3.794 3 C -0.232 4.232 4 C 0.210 3.790 5 N -0.453 5.453 6 C 0.444 3.556 7 N -0.498 5.498 8 C 0.251 3.749 9 C 0.593 3.407 10 O -0.445 6.445 11 N -0.628 5.628 12 C 0.335 3.665 13 C -0.234 4.234 14 C 0.143 3.857 15 C -0.454 4.454 16 H 0.084 0.916 17 C 0.077 3.923 18 N -0.783 5.783 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.282 4.282 24 C 0.121 3.879 25 N -0.559 5.559 26 N -0.269 5.269 27 N -0.329 5.329 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.192 0.808 33 H 0.421 0.579 34 H 0.131 0.869 35 H 0.284 0.716 36 H 0.104 0.896 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 20.763 -2.268 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 C -0.257 4.257 4 C 0.024 3.976 5 N -0.168 5.168 6 C 0.083 3.917 7 N -0.232 5.232 8 C -0.034 4.034 9 C 0.371 3.629 10 O -0.310 6.310 11 N -0.275 5.275 12 C 0.111 3.889 13 C -0.260 4.260 14 C 0.135 3.865 15 C -0.484 4.484 16 H 0.102 0.898 17 C -0.143 4.143 18 N -0.408 5.408 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.306 4.306 24 C -0.033 4.033 25 N -0.278 5.278 26 N -0.103 5.103 27 N -0.111 5.111 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.192 0.808 32 H 0.209 0.791 33 H 0.258 0.742 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.077 20.055 -2.202 21.732 hybrid contribution 1.315 0.071 0.107 1.322 sum -6.762 20.126 -2.095 21.335 Atomic orbital electron populations 1.21099 0.86218 1.05708 1.05118 1.20959 0.96799 0.81938 0.91537 1.21811 0.95755 0.97853 1.10250 1.23622 0.91752 0.95785 0.86489 1.68081 1.36189 0.95003 1.17505 1.22751 0.78388 0.93677 0.96875 1.70901 1.28349 0.96334 1.27571 1.24614 0.85656 0.97168 0.95913 1.16434 0.85284 0.81382 0.79826 1.90936 1.32744 1.63500 1.43791 1.43043 1.08308 1.05913 1.70259 1.18067 0.91147 0.81549 0.98144 1.21551 0.95006 0.95924 1.13490 1.17566 0.92449 0.90845 0.85668 1.19590 0.92895 0.98820 1.37136 0.89819 1.25984 1.01686 0.94361 0.92220 1.69773 1.32721 1.14874 1.23449 0.86235 0.80640 0.80509 0.78929 1.19104 1.20199 1.18492 1.21898 0.93402 0.99335 1.15940 1.21740 0.96669 0.88826 0.96057 1.67162 1.28002 1.08251 1.24411 1.78915 1.19286 0.82741 1.29339 1.49094 1.09187 1.06424 1.46401 0.88401 0.88325 0.88929 0.80820 0.79099 0.74230 0.85171 0.90514 0.87811 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.13 36.01 0.36 -0.31 16 2 C 0.21 1.75 6.86 -81.58 -0.56 1.19 16 3 C -0.23 -1.14 9.72 -39.77 -0.39 -1.52 16 4 C 0.21 1.34 11.27 -17.07 -0.19 1.14 16 5 N -0.45 -5.55 10.48 -13.79 -0.14 -5.69 16 6 C 0.44 6.88 8.99 -323.04 -2.90 3.98 16 7 N -0.50 -9.10 10.89 -12.24 -0.13 -9.23 16 8 C 0.25 4.84 7.92 -156.79 -1.24 3.60 16 9 C 0.59 13.04 7.80 -12.23 -0.10 12.95 16 10 O -0.45 -11.06 15.32 5.34 0.08 -10.98 16 11 N -0.63 -13.87 5.38 -12.29 -0.07 -13.94 16 12 C 0.33 8.46 7.41 -154.77 -1.15 7.31 16 13 C -0.23 -6.09 8.62 -38.47 -0.33 -6.42 16 14 C 0.14 3.79 5.60 -106.55 -0.60 3.20 16 15 C -0.45 -11.69 9.12 -37.65 -0.34 -12.03 16 16 H 0.08 2.06 7.90 -52.49 -0.41 1.64 16 17 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 18 N -0.78 -19.62 10.93 55.55 0.61 -19.01 16 19 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 23 C -0.28 -6.95 9.90 -38.70 -0.38 -7.33 16 24 C 0.12 2.94 11.15 -17.68 -0.20 2.74 16 25 N -0.56 -14.60 7.85 -12.54 -0.10 -14.70 16 26 N -0.27 -4.75 12.67 32.02 0.41 -4.34 16 27 N -0.33 -4.60 3.91 -10.06 -0.04 -4.64 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.17 0.04 8.06 -52.49 -0.42 -0.38 16 32 H 0.19 0.29 8.06 -52.49 -0.42 -0.13 16 33 H 0.42 8.34 8.37 -40.82 -0.34 8.00 16 34 H 0.13 3.38 6.20 -52.49 -0.33 3.05 16 35 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 36 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 37 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -35.53 335.39 -10.64 -46.17 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.17 Total: 7.96 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: -8.10 Total: 10.29 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: 0.53 Total: -71.56 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.53 -10.64 -46.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.881 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds