Wall clock time and date at job start Tue Mar 31 2020 13:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35691 * 120.48661 * 2 1 4 4 C 1.40171 * 119.27365 * 179.72922 * 3 2 1 5 5 N 1.31256 * 120.35592 * 0.24256 * 4 3 2 6 6 C 1.33992 * 120.88301 * 359.97438 * 5 4 3 7 7 N 1.32496 * 132.34395 * 180.02562 * 6 5 4 8 8 C 1.33477 * 109.75780 * 180.02562 * 7 6 5 9 9 C 1.48080 * 125.32570 * 179.97438 * 8 7 6 10 10 O 1.21525 * 119.99799 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00121 * 0.03845 * 9 8 7 12 12 C 1.39385 * 120.00080 * 175.13888 * 11 9 8 13 13 C 1.38625 * 119.57899 * 184.93292 * 12 11 9 14 14 C 1.40810 * 118.78576 * 179.71493 * 13 12 11 15 15 C 1.41546 * 120.99182 * 180.29992 * 14 13 12 16 16 H 1.07996 * 119.99860 * 203.89892 * 15 14 13 17 17 C 1.40029 * 120.00035 * 23.89590 * 15 14 13 18 18 N 1.30741 * 119.99844 * 16.82729 * 17 15 14 19 19 Si 1.86801 * 120.00024 * 196.82177 * 17 15 14 20 20 H 1.48497 * 109.47346 * 90.00250 * 19 17 15 21 21 H 1.48504 * 109.46992 * 210.00434 * 19 17 15 22 22 H 1.48507 * 109.47171 * 330.00212 * 19 17 15 23 23 C 1.41180 * 118.01078 * 0.54290 * 14 13 12 24 24 C 1.37588 * 119.02034 * 359.73188 * 23 14 13 25 25 N 1.32085 * 121.11061 * 359.97438 * 24 23 14 26 26 N 1.32005 * 109.34495 * 359.97438 * 8 7 6 27 27 N 1.36164 * 120.48890 * 180.20409 * 2 1 3 28 28 H 1.08992 * 109.47109 * 269.79363 * 1 2 3 29 29 H 1.09001 * 109.47028 * 29.79746 * 1 2 3 30 30 H 1.08998 * 109.46691 * 149.78831 * 1 2 3 31 31 H 1.07996 * 120.35998 * 359.94804 * 3 2 1 32 32 H 1.08001 * 119.81952 * 180.26279 * 4 3 2 33 33 H 0.97005 * 120.00467 * 355.13629 * 11 9 8 34 34 H 1.07997 * 120.60591 * 359.97438 * 13 12 11 35 35 H 0.97008 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.48605 * 179.75697 * 23 14 13 37 37 H 1.07991 * 119.44507 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1693 0.0000 4 6 3.5968 1.1396 0.0058 5 7 4.2360 -0.0067 0.0063 6 6 3.5666 -1.1675 0.0019 7 7 3.9690 -2.4298 0.0018 8 6 2.9093 -3.2413 -0.0043 9 6 2.9639 -4.7211 -0.0068 10 8 1.9346 -5.3671 -0.0129 11 7 4.1551 -5.3514 -0.0021 12 6 4.2080 -6.7407 0.0978 13 6 5.4371 -7.3726 0.2054 14 6 5.4709 -8.7763 0.3115 15 6 6.6996 -9.4690 0.4299 16 1 6.7669 -10.5043 0.1299 17 6 7.8278 -8.8119 0.9359 18 7 7.6906 -7.6923 1.5969 19 14 9.5290 -9.5350 0.6665 20 1 10.0966 -9.0068 -0.5999 21 1 10.4120 -9.1585 1.7997 22 1 9.4309 -11.0146 0.5858 23 6 4.2428 -9.4725 0.2909 24 6 3.0726 -8.7583 0.1748 25 7 3.0833 -7.4407 0.0836 26 7 1.8049 -2.5182 -0.0077 27 7 2.1979 -1.1734 -0.0042 28 1 -0.3633 -0.0037 1.0276 29 1 -0.3633 0.8918 -0.5107 30 1 -0.3632 -0.8881 -0.5171 31 1 1.6693 2.1125 -0.0008 32 1 4.1535 2.0651 0.0101 33 1 4.9757 -4.8383 -0.0682 34 1 6.3519 -6.7986 0.2119 35 1 8.4722 -7.2372 1.9478 36 1 4.2223 -10.5497 0.3656 37 1 2.1293 -9.2838 0.1588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532435109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:31 Heat of formation + Delta-G solvation = 125.972816 kcal Electronic energy + Delta-G solvation = -25395.713933 eV Core-core repulsion = 21561.291596 eV Total energy + Delta-G solvation = -3834.422337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.20225 -41.49045 -40.13438 -39.34006 -36.43316 -36.25346 -35.65986 -33.07944 -32.50418 -32.25545 -30.64148 -29.52546 -27.96696 -26.83007 -25.30865 -23.95774 -23.62086 -22.72415 -21.49822 -19.93832 -19.67325 -19.20165 -18.51291 -18.08184 -17.53957 -17.05570 -16.60225 -16.40461 -16.11094 -15.92177 -15.55138 -15.21546 -14.73113 -14.70061 -14.41182 -14.38289 -14.26746 -13.86710 -13.84015 -13.35618 -13.21416 -12.95160 -12.69064 -12.67065 -12.19180 -11.91522 -11.73867 -11.69138 -11.59756 -11.20064 -11.13132 -11.00062 -10.00963 -9.97381 -9.75233 -8.98827 -8.68368 -6.58732 -0.81142 -0.53624 0.35679 0.48625 0.92915 0.97516 1.41328 1.52839 1.55372 1.57328 1.94779 2.08771 2.19623 2.28464 2.75039 2.78129 3.14817 3.25302 3.69644 3.79653 4.02346 4.12934 4.26031 4.37692 4.46927 4.54864 4.64548 4.70132 4.71887 4.87931 4.95118 5.00367 5.12291 5.19358 5.22100 5.40853 5.50661 5.82742 5.95827 6.17999 6.29155 6.44667 6.52942 6.74010 6.79667 6.90356 7.71081 8.24249 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002845 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.927109 B = 9840.606309 C =11241.142125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.167 3.833 3 C -0.185 4.185 4 C 0.224 3.776 5 N -0.489 5.489 6 C 0.429 3.571 7 N -0.534 5.534 8 C 0.231 3.769 9 C 0.597 3.403 10 O -0.483 6.483 11 N -0.625 5.625 12 C 0.330 3.670 13 C -0.252 4.252 14 C 0.115 3.885 15 C -0.478 4.478 16 H 0.090 0.910 17 C 0.037 3.963 18 N -0.810 5.810 19 Si 0.990 3.010 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.255 1.255 23 C -0.292 4.292 24 C 0.117 3.883 25 N -0.583 5.583 26 N -0.290 5.290 27 N -0.329 5.329 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.063 0.937 31 H 0.239 0.761 32 H 0.250 0.750 33 H 0.427 0.573 34 H 0.123 0.877 35 H 0.293 0.707 36 H 0.123 0.877 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 24.375 -2.321 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.208 4.208 4 C 0.042 3.958 5 N -0.207 5.207 6 C 0.069 3.931 7 N -0.270 5.270 8 C -0.053 4.053 9 C 0.378 3.622 10 O -0.350 6.350 11 N -0.272 5.272 12 C 0.106 3.894 13 C -0.277 4.277 14 C 0.107 3.893 15 C -0.509 4.509 16 H 0.108 0.892 17 C -0.181 4.181 18 N -0.435 5.435 19 Si 0.810 3.190 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.178 1.178 23 C -0.315 4.315 24 C -0.037 4.037 25 N -0.304 5.304 26 N -0.126 5.126 27 N -0.111 5.111 28 H 0.124 0.876 29 H 0.162 0.838 30 H 0.082 0.918 31 H 0.256 0.744 32 H 0.265 0.735 33 H 0.266 0.734 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.813 23.755 -2.254 25.109 hybrid contribution 1.153 -0.648 0.148 1.331 sum -6.659 23.108 -2.105 24.140 Atomic orbital electron populations 1.21231 0.84111 1.06510 1.05851 1.22027 0.98698 0.81054 0.93066 1.22659 0.95148 0.98612 1.04406 1.24817 0.93169 0.95607 0.82190 1.68242 1.36983 0.95313 1.20123 1.22908 0.79151 0.93890 0.97118 1.70689 1.28846 0.98004 1.29423 1.23719 0.86879 0.95699 0.98979 1.16677 0.84442 0.82772 0.78357 1.90881 1.33645 1.65056 1.45427 1.43001 1.09042 1.05017 1.70099 1.18260 0.90939 0.82739 0.97494 1.21508 0.94941 0.96135 1.15135 1.18001 0.93724 0.91397 0.86224 1.19907 0.93623 0.99414 1.37922 0.89207 1.26911 1.05463 0.94531 0.91153 1.69824 1.34432 1.15870 1.23397 0.85075 0.75072 0.79799 0.79024 1.18586 1.19215 1.17813 1.22109 0.93003 1.00299 1.16100 1.22255 0.97960 0.88513 0.94932 1.67279 1.28377 1.09201 1.25507 1.78694 1.19218 0.84870 1.29835 1.49125 1.09328 1.06259 1.46348 0.87594 0.83768 0.91809 0.74420 0.73461 0.73397 0.85905 0.89583 0.85924 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.13 71.24 0.72 -0.25 16 2 C 0.17 2.37 6.86 41.30 0.28 2.65 16 3 C -0.18 -0.73 9.72 22.15 0.22 -0.51 16 4 C 0.22 1.74 11.27 85.25 0.96 2.70 16 5 N -0.49 -11.09 10.48 -197.54 -2.07 -13.16 16 6 C 0.43 13.44 8.99 261.57 2.35 15.79 16 7 N -0.53 -20.70 10.89 -192.64 -2.10 -22.80 16 8 C 0.23 9.58 7.92 137.37 1.09 10.66 16 9 C 0.60 28.29 7.80 86.86 0.68 28.97 16 10 O -0.48 -25.62 15.32 -3.79 -0.06 -25.67 16 11 N -0.62 -29.64 5.38 -311.08 -1.67 -31.32 16 12 C 0.33 17.65 7.41 132.79 0.98 18.64 16 13 C -0.25 -13.76 8.62 22.99 0.20 -13.57 16 14 C 0.11 6.31 5.60 -21.11 -0.12 6.19 16 15 C -0.48 -25.14 9.12 23.52 0.21 -24.93 16 16 H 0.09 4.46 7.90 -2.91 -0.02 4.44 16 17 C 0.04 1.82 5.20 85.29 0.44 2.26 16 18 N -0.81 -41.42 10.93 21.84 0.24 -41.19 16 19 Si 0.99 36.84 29.59 68.60 2.03 38.87 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 23 C -0.29 -14.73 9.90 22.84 0.23 -14.50 16 24 C 0.12 5.81 11.15 84.50 0.94 6.75 16 25 N -0.58 -31.85 7.85 -193.58 -1.52 -33.36 16 26 N -0.29 -10.83 12.67 -52.62 -0.67 -11.50 16 27 N -0.33 -9.16 3.91 -185.76 -0.73 -9.88 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.14 -0.21 8.09 -2.39 -0.02 -0.22 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.24 -2.08 8.06 -2.91 -0.02 -2.10 16 32 H 0.25 -1.04 8.06 -2.91 -0.02 -1.07 16 33 H 0.43 18.47 8.37 -92.70 -0.78 17.70 16 34 H 0.12 6.76 6.20 -2.91 -0.02 6.74 16 35 H 0.29 13.48 8.29 -92.70 -0.77 12.71 16 36 H 0.12 5.55 8.06 -2.91 -0.02 5.53 16 37 H 0.16 6.55 8.06 -2.92 -0.02 6.53 16 Total: -1.00 -86.35 335.39 3.02 -83.33 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.38 Total: 25.84 kcal Atomic # 6 Polarization: 31.67 SS G_CDS: 9.19 Total: 40.85 kcal Atomic # 7 Polarization: -154.69 SS G_CDS: -8.52 Total: -163.21 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -86.35 3.02 -83.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.302 kcal (2) G-P(sol) polarization free energy of solvation -86.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds