Wall clock time and date at job start Tue Mar 31 2020 13:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37986 * 119.95058 * 2 1 4 4 C 1.39320 * 119.90400 * 179.97438 * 3 2 1 5 5 C 1.48405 * 120.09372 * 180.02562 * 4 3 2 6 6 N 1.30941 * 126.29633 * 359.66218 * 5 4 3 7 7 O 1.21270 * 110.35528 * 179.80003 * 6 5 4 8 8 C 1.34301 * 109.89054 * 0.47158 * 7 6 5 9 9 C 1.47448 * 126.58096 * 179.70582 * 8 7 6 10 10 C 1.40131 * 119.89867 * 179.72558 * 9 8 7 11 11 C 1.36207 * 120.10067 * 179.71735 * 10 9 8 12 12 C 1.40963 * 119.89650 * 0.53970 * 11 10 9 13 13 C 1.40964 * 120.10115 * 179.71832 * 12 11 10 14 14 H 1.08000 * 120.00543 * 155.02899 * 13 12 11 15 15 C 1.40152 * 119.99861 * 335.02786 * 13 12 11 16 16 N 1.30698 * 120.00198 * 342.16548 * 15 13 12 17 17 Si 1.86798 * 120.00076 * 162.16678 * 15 13 12 18 18 H 1.48505 * 109.47321 * 94.65800 * 17 15 13 19 19 H 1.48499 * 109.47057 * 214.65552 * 17 15 13 20 20 H 1.48497 * 109.47317 * 334.65714 * 17 15 13 21 21 C 1.40968 * 119.80230 * 359.73228 * 12 11 10 22 22 C 1.36202 * 119.89443 * 0.02562 * 21 12 11 23 23 N 1.32157 * 106.83961 * 359.71032 * 8 7 6 24 24 C 1.39366 * 119.81516 * 0.02562 * 4 3 2 25 25 C 1.37945 * 119.90769 * 0.02562 * 24 4 3 26 26 C 1.38539 * 119.95231 * 180.02562 * 2 1 3 27 27 F 1.35102 * 119.91019 * 0.26285 * 26 2 1 28 28 H 1.09003 * 109.47218 * 269.97994 * 1 2 3 29 29 H 1.09002 * 109.47191 * 29.97495 * 1 2 3 30 30 H 1.08995 * 109.47006 * 149.98152 * 1 2 3 31 31 H 1.07999 * 120.04828 * 0.03871 * 3 2 1 32 32 H 1.08003 * 119.94612 * 0.02562 * 10 9 8 33 33 H 1.08003 * 120.05096 * 180.27647 * 11 10 9 34 34 H 0.97000 * 120.00636 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.04841 * 179.97438 * 21 12 11 36 36 H 1.08001 * 119.95094 * 179.97438 * 22 21 12 37 37 H 1.08002 * 120.04841 * 180.02562 * 24 4 3 38 38 H 1.07998 * 119.95695 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1956 0.0000 4 6 3.5892 1.1945 0.0005 5 6 4.3343 2.4779 0.0011 6 7 3.8109 3.6781 -0.0050 7 8 4.6844 4.5193 0.0014 8 6 5.8895 3.9265 0.0023 9 6 7.2006 4.6012 0.0032 10 6 8.3775 3.8406 0.0099 11 6 9.5909 4.4596 0.0049 12 6 9.6614 5.8674 0.0046 13 6 10.9149 6.5124 0.0055 14 1 11.0075 7.5133 -0.3895 15 6 12.0410 5.8549 0.5191 16 7 11.8924 4.8173 1.2999 17 14 13.7543 6.4613 0.0877 18 1 14.2365 7.3797 1.1504 19 1 14.6767 5.3026 -0.0212 20 1 13.7118 7.1838 -1.2090 21 6 8.4748 6.6284 0.0037 22 6 7.2660 6.0009 0.0036 23 7 5.6748 2.6225 0.0021 24 6 4.2811 -0.0153 0.0005 25 6 3.5846 -1.2060 -0.0005 26 6 2.1987 -1.2004 -0.0005 27 9 1.5204 -2.3687 -0.0064 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6559 2.1309 0.0006 32 1 8.3224 2.7620 0.0139 33 1 10.4974 3.8726 0.0056 34 1 12.6717 4.3624 1.6556 35 1 8.5243 7.7073 0.0038 36 1 6.3563 6.5831 0.0033 37 1 5.3611 -0.0206 0.0014 38 1 4.1200 -2.1439 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535406295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:51 Heat of formation + Delta-G solvation = 51.186710 kcal Electronic energy + Delta-G solvation = -24695.059281 eV Core-core repulsion = 20805.181262 eV Total energy + Delta-G solvation = -3889.878019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.10978 -44.69385 -39.31107 -37.86983 -35.26308 -34.34043 -33.06769 -32.45558 -30.54962 -29.88937 -29.38223 -27.27244 -26.04294 -24.32708 -23.40715 -22.23110 -21.59269 -20.71768 -20.14157 -17.74054 -17.70120 -17.37976 -17.33187 -16.58462 -15.88425 -15.59687 -15.57794 -15.06893 -14.29086 -14.16518 -13.69016 -13.64824 -13.51265 -13.41080 -12.93377 -12.86253 -12.54177 -12.35752 -12.18440 -12.10612 -11.86089 -11.68010 -11.34614 -11.30756 -11.20911 -11.06687 -10.87006 -10.41255 -10.11127 -9.97381 -9.70023 -9.40521 -9.12552 -8.52514 -7.89120 -7.59811 -7.21725 -4.76430 0.60339 1.02955 1.45973 2.44839 2.76147 2.85874 2.89757 2.91305 3.20973 3.54786 3.61033 3.62921 3.83528 4.02696 4.29466 4.35944 4.53090 4.68681 4.97061 5.09829 5.31280 5.33420 5.36185 5.52591 5.56605 5.78615 5.81223 5.98023 6.00389 6.06236 6.09679 6.28576 6.40739 6.55838 6.62341 6.66507 6.69995 6.84949 6.97242 7.26806 7.47570 7.66353 7.73180 7.86268 8.21672 8.42299 8.54416 8.78389 9.68353 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.002225 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.380647 B =12579.486425 C =13482.505215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.124 4.124 3 C -0.062 4.062 4 C -0.010 4.010 5 C 0.206 3.794 6 N -0.407 5.407 7 O 0.054 5.946 8 C 0.286 3.714 9 C -0.201 4.201 10 C -0.032 4.032 11 C -0.179 4.179 12 C 0.128 3.872 13 C -0.423 4.423 14 H 0.090 0.910 15 C 0.071 3.929 16 N -0.758 5.758 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.255 1.255 21 C -0.229 4.229 22 C -0.035 4.035 23 N -0.519 5.519 24 C -0.054 4.054 25 C -0.152 4.152 26 C 0.104 3.896 27 F -0.138 7.138 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.291 0.709 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 -7.177 -1.538 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.082 4.082 4 C -0.012 4.012 5 C -0.064 4.064 6 N -0.122 5.122 7 O -0.001 6.001 8 C 0.078 3.922 9 C -0.206 4.206 10 C -0.052 4.052 11 C -0.199 4.199 12 C 0.124 3.876 13 C -0.450 4.450 14 H 0.108 0.892 15 C -0.153 4.153 16 N -0.380 5.380 17 Si 0.739 3.261 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.179 1.179 21 C -0.249 4.249 22 C -0.056 4.056 23 N -0.254 5.254 24 C -0.074 4.074 25 C -0.170 4.170 26 C 0.084 3.916 27 F -0.116 7.116 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.165 0.835 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.174 -7.666 -1.391 13.622 hybrid contribution 0.812 0.101 0.012 0.819 sum -10.361 -7.566 -1.379 12.903 Atomic orbital electron populations 1.20717 0.89764 1.03434 1.02942 1.19791 0.97205 0.91401 1.04073 1.20942 0.92476 0.97801 0.96934 1.17421 0.91779 0.88553 1.03465 1.23539 0.88147 0.92830 1.01897 1.74716 1.13748 0.99131 1.24623 1.85288 1.13260 1.33379 1.68159 1.26657 0.88849 0.85944 0.90790 1.16648 0.84161 0.92268 1.27567 1.20401 0.91137 0.98012 0.95690 1.20975 0.96179 0.94720 1.07984 1.17861 0.92416 0.92170 0.85181 1.19950 0.91964 1.01744 1.31369 0.89228 1.26193 1.02642 0.93909 0.92519 1.69755 1.34090 1.15283 1.18856 0.86141 0.79725 0.79663 0.80560 1.19040 1.19528 1.17889 1.20666 0.91912 0.98346 1.13932 1.20381 0.97321 0.92162 0.95688 1.72232 1.11795 1.14609 1.26744 1.21126 1.01311 0.89774 0.95196 1.21075 0.91966 0.99744 1.04254 1.17664 0.90016 0.80879 1.03030 1.91477 1.80228 1.46119 1.93788 0.90696 0.90772 0.91090 0.84228 0.87742 0.85805 0.89764 0.87817 0.88053 0.83489 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.83 36.01 0.35 -0.61 16 2 C -0.12 -1.42 5.88 -104.60 -0.62 -2.03 16 3 C -0.06 -0.81 9.34 -39.27 -0.37 -1.17 16 4 C -0.01 -0.16 5.88 -104.89 -0.62 -0.77 16 5 C 0.21 3.84 7.79 -156.33 -1.22 2.62 16 6 N -0.41 -7.80 11.84 31.25 0.37 -7.43 16 7 O 0.05 1.08 11.09 16.39 0.18 1.27 16 8 C 0.29 5.95 7.98 -13.88 -0.11 5.84 16 9 C -0.20 -4.35 5.89 -104.73 -0.62 -4.96 16 10 C -0.03 -0.72 9.63 -39.60 -0.38 -1.10 16 11 C -0.18 -4.19 8.63 -39.28 -0.34 -4.53 16 12 C 0.13 3.01 5.57 -106.80 -0.59 2.41 16 13 C -0.42 -9.68 9.03 -37.83 -0.34 -10.02 16 14 H 0.09 1.92 7.91 -52.49 -0.42 1.51 16 15 C 0.07 1.53 5.13 -17.32 -0.09 1.44 16 16 N -0.76 -17.08 10.97 55.56 0.61 -16.47 16 17 Si 0.92 16.03 29.60 -169.99 -5.03 11.00 16 18 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 19 H -0.27 -4.67 7.11 56.52 0.40 -4.26 16 20 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 21 C -0.23 -4.96 9.73 -39.28 -0.38 -5.34 16 22 C -0.04 -0.73 9.65 -39.61 -0.38 -1.12 16 23 N -0.52 -10.54 10.92 -10.23 -0.11 -10.65 16 24 C -0.05 -0.73 9.70 -39.27 -0.38 -1.11 16 25 C -0.15 -1.73 10.01 -39.56 -0.40 -2.12 16 26 C 0.10 1.22 7.24 -39.34 -0.28 0.93 16 27 F -0.14 -1.57 16.46 2.25 0.04 -1.54 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.07 0.57 7.63 -51.93 -0.40 0.17 16 31 H 0.14 1.74 7.86 -52.49 -0.41 1.33 16 32 H 0.10 2.22 7.85 -52.48 -0.41 1.80 16 33 H 0.12 2.94 6.18 -52.48 -0.32 2.62 16 34 H 0.29 5.87 8.29 -40.82 -0.34 5.53 16 35 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.10 1.85 7.92 -52.49 -0.42 1.44 16 37 H 0.15 1.97 7.87 -52.49 -0.41 1.55 16 38 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -24.95 342.97 -9.15 -34.09 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -3.61 Total: 6.21 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -6.76 Total: -21.64 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.87 Total: -34.56 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.18 Total: 1.27 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -24.95 -9.15 -34.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535406295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.281 kcal (2) G-P(sol) polarization free energy of solvation -24.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds