Wall clock time and date at job start Tue Mar 31 2020 13:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37986 * 119.95058 * 2 1 4 4 C 1.39320 * 119.90400 * 179.97438 * 3 2 1 5 5 C 1.48405 * 120.09372 * 180.02562 * 4 3 2 6 6 N 1.30941 * 126.29633 * 359.66218 * 5 4 3 7 7 O 1.21270 * 110.35528 * 179.80003 * 6 5 4 8 8 C 1.34301 * 109.89054 * 0.47158 * 7 6 5 9 9 C 1.47448 * 126.58096 * 179.70582 * 8 7 6 10 10 C 1.40131 * 119.89867 * 179.72558 * 9 8 7 11 11 C 1.36207 * 120.10067 * 179.71735 * 10 9 8 12 12 C 1.40963 * 119.89650 * 0.53970 * 11 10 9 13 13 C 1.40964 * 120.10115 * 179.71832 * 12 11 10 14 14 H 1.08000 * 120.00543 * 155.02899 * 13 12 11 15 15 C 1.40152 * 119.99861 * 335.02786 * 13 12 11 16 16 N 1.30698 * 120.00198 * 342.16548 * 15 13 12 17 17 Si 1.86798 * 120.00076 * 162.16678 * 15 13 12 18 18 H 1.48505 * 109.47321 * 94.65800 * 17 15 13 19 19 H 1.48499 * 109.47057 * 214.65552 * 17 15 13 20 20 H 1.48497 * 109.47317 * 334.65714 * 17 15 13 21 21 C 1.40968 * 119.80230 * 359.73228 * 12 11 10 22 22 C 1.36202 * 119.89443 * 0.02562 * 21 12 11 23 23 N 1.32157 * 106.83961 * 359.71032 * 8 7 6 24 24 C 1.39366 * 119.81516 * 0.02562 * 4 3 2 25 25 C 1.37945 * 119.90769 * 0.02562 * 24 4 3 26 26 C 1.38539 * 119.95231 * 180.02562 * 2 1 3 27 27 F 1.35102 * 119.91019 * 0.26285 * 26 2 1 28 28 H 1.09003 * 109.47218 * 269.97994 * 1 2 3 29 29 H 1.09002 * 109.47191 * 29.97495 * 1 2 3 30 30 H 1.08995 * 109.47006 * 149.98152 * 1 2 3 31 31 H 1.07999 * 120.04828 * 0.03871 * 3 2 1 32 32 H 1.08003 * 119.94612 * 0.02562 * 10 9 8 33 33 H 1.08003 * 120.05096 * 180.27647 * 11 10 9 34 34 H 0.97000 * 120.00636 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.04841 * 179.97438 * 21 12 11 36 36 H 1.08001 * 119.95094 * 179.97438 * 22 21 12 37 37 H 1.08002 * 120.04841 * 180.02562 * 24 4 3 38 38 H 1.07998 * 119.95695 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1956 0.0000 4 6 3.5892 1.1945 0.0005 5 6 4.3343 2.4779 0.0011 6 7 3.8109 3.6781 -0.0050 7 8 4.6844 4.5193 0.0014 8 6 5.8895 3.9265 0.0023 9 6 7.2006 4.6012 0.0032 10 6 8.3775 3.8406 0.0099 11 6 9.5909 4.4596 0.0049 12 6 9.6614 5.8674 0.0046 13 6 10.9149 6.5124 0.0055 14 1 11.0075 7.5133 -0.3895 15 6 12.0410 5.8549 0.5191 16 7 11.8924 4.8173 1.2999 17 14 13.7543 6.4613 0.0877 18 1 14.2365 7.3797 1.1504 19 1 14.6767 5.3026 -0.0212 20 1 13.7118 7.1838 -1.2090 21 6 8.4748 6.6284 0.0037 22 6 7.2660 6.0009 0.0036 23 7 5.6748 2.6225 0.0021 24 6 4.2811 -0.0153 0.0005 25 6 3.5846 -1.2060 -0.0005 26 6 2.1987 -1.2004 -0.0005 27 9 1.5204 -2.3687 -0.0064 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6559 2.1309 0.0006 32 1 8.3224 2.7620 0.0139 33 1 10.4974 3.8726 0.0056 34 1 12.6717 4.3624 1.6556 35 1 8.5243 7.7073 0.0038 36 1 6.3563 6.5831 0.0033 37 1 5.3611 -0.0206 0.0014 38 1 4.1200 -2.1439 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535406295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:51 Heat of formation + Delta-G solvation = 41.363757 kcal Electronic energy + Delta-G solvation = -24695.485236 eV Core-core repulsion = 20805.181262 eV Total energy + Delta-G solvation = -3890.303974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.03723 -46.23171 -40.31965 -39.57395 -36.75062 -35.97361 -34.15725 -33.78748 -31.89583 -31.58660 -30.89126 -28.17525 -27.65964 -25.63922 -24.82377 -23.57140 -22.91118 -22.33505 -21.55493 -19.39683 -18.92969 -18.88267 -18.61119 -17.66056 -17.19249 -16.85363 -16.79947 -16.53709 -15.77907 -15.33413 -15.25089 -14.57874 -14.49882 -14.42729 -14.31272 -14.03162 -13.88893 -13.80912 -13.60607 -13.45081 -13.27848 -12.94936 -12.85652 -12.77561 -12.46038 -12.35522 -12.20927 -11.90104 -11.72533 -11.50693 -11.38395 -11.00865 -10.07978 -9.65630 -9.61648 -9.28479 -8.84764 -6.50006 -0.55094 -0.11768 0.07602 0.98601 1.15271 1.37904 1.43000 1.56948 1.69941 1.94127 2.15465 2.49618 2.51477 2.64253 3.03998 3.07754 3.61893 3.62115 3.67875 3.97936 4.04365 4.28134 4.37756 4.39126 4.47194 4.64579 4.70870 4.73573 4.79500 4.93939 4.95277 5.00005 5.03724 5.11615 5.14072 5.17277 5.26974 5.29371 5.56090 5.69530 5.76930 5.95113 5.99185 6.14241 6.49272 6.70310 6.81572 7.22492 8.08811 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.002225 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.380647 B =12579.486425 C =13482.505215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C -0.061 4.061 4 C -0.041 4.041 5 C 0.211 3.789 6 N -0.413 5.413 7 O 0.051 5.949 8 C 0.279 3.721 9 C -0.209 4.209 10 C -0.035 4.035 11 C -0.197 4.197 12 C 0.102 3.898 13 C -0.449 4.449 14 H 0.097 0.903 15 C 0.034 3.966 16 N -0.789 5.789 17 Si 0.989 3.011 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.253 1.253 21 C -0.238 4.238 22 C -0.033 4.033 23 N -0.530 5.530 24 C -0.059 4.059 25 C -0.143 4.143 26 C 0.106 3.894 27 F -0.133 7.133 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.299 0.701 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.142 0.858 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.471 -7.853 -1.714 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.081 4.081 4 C -0.043 4.043 5 C -0.059 4.059 6 N -0.130 5.130 7 O -0.002 6.002 8 C 0.069 3.931 9 C -0.214 4.214 10 C -0.055 4.055 11 C -0.216 4.216 12 C 0.098 3.902 13 C -0.475 4.475 14 H 0.115 0.885 15 C -0.186 4.186 16 N -0.412 5.412 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.176 1.176 21 C -0.258 4.258 22 C -0.053 4.053 23 N -0.265 5.265 24 C -0.079 4.079 25 C -0.161 4.161 26 C 0.086 3.914 27 F -0.111 7.111 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.160 0.840 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.137 -8.331 -1.564 14.804 hybrid contribution 0.916 0.152 0.085 0.933 sum -11.220 -8.179 -1.479 13.964 Atomic orbital electron populations 1.20820 0.87568 1.04470 1.04044 1.20058 0.98749 0.90609 1.02564 1.20983 0.91581 0.98698 0.96836 1.17591 0.92689 0.87646 1.06360 1.24102 0.87658 0.93879 1.00287 1.74690 1.13424 0.99351 1.25510 1.85275 1.12979 1.33645 1.68305 1.26562 0.88941 0.86288 0.91289 1.16766 0.84339 0.92832 1.27461 1.20455 0.91244 0.98250 0.95582 1.20937 0.96127 0.95027 1.09542 1.18201 0.93633 0.92465 0.85882 1.20256 0.92588 1.02480 1.32224 0.88458 1.27036 1.06104 0.93745 0.91736 1.69791 1.35638 1.16282 1.19498 0.85070 0.74723 0.79153 0.80253 1.18403 1.19006 1.17634 1.20883 0.91702 0.99197 1.13976 1.20623 0.98060 0.92006 0.94602 1.72229 1.13005 1.14471 1.26745 1.21122 1.01214 0.89952 0.95623 1.21277 0.92063 0.99976 1.02801 1.17781 0.90191 0.81115 1.02266 1.91496 1.80119 1.45850 1.93636 0.89446 0.89621 0.90241 0.83926 0.87483 0.86936 0.88917 0.86172 0.85565 0.83990 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.83 71.24 0.70 -0.91 16 2 C -0.12 -2.44 5.88 -19.85 -0.12 -2.56 16 3 C -0.06 -1.51 9.34 22.47 0.21 -1.30 16 4 C -0.04 -1.22 5.88 -20.04 -0.12 -1.34 16 5 C 0.21 7.83 7.79 137.36 1.07 8.90 16 6 N -0.41 -15.76 11.84 -57.42 -0.68 -16.44 16 7 O 0.05 2.02 11.09 68.70 0.76 2.78 16 8 C 0.28 11.69 7.98 87.15 0.70 12.38 16 9 C -0.21 -9.15 5.89 -19.93 -0.12 -9.27 16 10 C -0.04 -1.62 9.63 22.26 0.21 -1.40 16 11 C -0.20 -9.53 8.63 22.46 0.19 -9.34 16 12 C 0.10 4.92 5.57 -21.27 -0.12 4.80 16 13 C -0.45 -20.81 9.03 23.40 0.21 -20.60 16 14 H 0.10 4.20 7.91 -2.91 -0.02 4.17 16 15 C 0.03 1.49 5.13 85.33 0.44 1.93 16 16 N -0.79 -36.24 10.97 21.86 0.24 -36.00 16 17 Si 0.99 32.48 29.60 68.60 2.03 34.51 16 18 H -0.26 -8.23 7.11 99.48 0.71 -7.53 16 19 H -0.27 -8.43 7.11 99.48 0.71 -7.73 16 20 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 21 C -0.24 -10.38 9.73 22.46 0.22 -10.16 16 22 C -0.03 -1.37 9.65 22.25 0.21 -1.15 16 23 N -0.53 -21.68 10.92 -302.02 -3.30 -24.98 16 24 C -0.06 -1.53 9.70 22.47 0.22 -1.32 16 25 C -0.14 -2.95 10.01 22.28 0.22 -2.72 16 26 C 0.11 2.22 7.24 22.43 0.16 2.38 16 27 F -0.13 -2.64 16.46 44.97 0.74 -1.90 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.08 1.03 7.63 -2.39 -0.02 1.01 16 31 H 0.14 3.39 7.86 -2.91 -0.02 3.37 16 32 H 0.11 4.71 7.85 -2.91 -0.02 4.68 16 33 H 0.11 5.60 6.18 -2.91 -0.02 5.59 16 34 H 0.30 12.23 8.29 -92.71 -0.77 11.46 16 35 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.13 4.50 7.92 -2.91 -0.02 4.48 16 37 H 0.14 3.77 7.87 -2.91 -0.02 3.75 16 38 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -53.81 342.97 5.21 -48.60 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 1.12 Total: 25.10 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.30 Total: -31.68 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -3.74 Total: -77.42 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.76 Total: 2.78 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.74 Total: -1.90 kcal Atomic # 14 Polarization: 32.48 SS G_CDS: 2.03 Total: 34.51 kcal Total: -53.81 5.21 -48.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535406295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.967 kcal (2) G-P(sol) polarization free energy of solvation -53.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds