Wall clock time and date at job start Tue Mar 31 2020 13:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38058 * 120.03037 * 2 1 4 4 C 1.38262 * 120.14415 * 179.97438 * 3 2 1 5 5 C 1.38556 * 120.21467 * 0.02562 * 4 3 2 6 6 F 1.35099 * 119.96650 * 179.97438 * 5 4 3 7 7 C 1.38233 * 120.06921 * 359.97438 * 5 4 3 8 8 C 1.39294 * 120.03825 * 179.72681 * 2 1 3 9 9 C 1.48453 * 120.10466 * 359.97438 * 8 2 1 10 10 N 1.30913 * 126.29579 * 359.68758 * 9 8 2 11 11 O 1.21273 * 110.36421 * 179.84116 * 10 9 8 12 12 C 1.34303 * 109.88301 * 0.43185 * 11 10 9 13 13 C 1.47443 * 126.58600 * 179.71782 * 12 11 10 14 14 C 1.40122 * 119.90303 * 179.74648 * 13 12 11 15 15 C 1.36210 * 120.10312 * 179.75608 * 14 13 12 16 16 C 1.40960 * 119.89654 * 0.51713 * 15 14 13 17 17 C 1.40966 * 120.10010 * 179.71809 * 16 15 14 18 18 H 1.08003 * 119.99968 * 24.71071 * 17 16 15 19 19 C 1.40157 * 119.99939 * 204.72022 * 17 16 15 20 20 N 1.30695 * 120.00119 * 17.92979 * 19 17 16 21 21 Si 1.86798 * 119.99855 * 197.93000 * 19 17 16 22 22 H 1.48507 * 109.47319 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47107 * 119.99577 * 21 19 17 24 24 H 1.48491 * 109.47340 * 239.99782 * 21 19 17 25 25 C 1.40958 * 119.80162 * 359.74076 * 16 15 14 26 26 C 1.36207 * 119.89786 * 359.97438 * 25 16 15 27 27 N 1.32166 * 106.83233 * 359.73336 * 12 11 10 28 28 H 1.08995 * 109.47430 * 90.00535 * 1 2 3 29 29 H 1.08998 * 109.47141 * 329.99724 * 1 2 3 30 30 H 1.09004 * 109.46449 * 209.99999 * 1 2 3 31 31 H 1.07994 * 119.92868 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.89460 * 180.02562 * 4 3 2 33 33 H 1.07993 * 120.07940 * 180.02562 * 7 5 4 34 34 H 1.08006 * 119.94837 * 359.97438 * 14 13 12 35 35 H 1.08003 * 120.04897 * 180.25256 * 15 14 13 36 36 H 0.96994 * 120.00198 * 180.02562 * 20 19 17 37 37 H 1.08004 * 120.05539 * 179.97438 * 25 16 15 38 38 H 1.08002 * 119.95064 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1953 0.0000 4 6 3.5805 1.1980 0.0005 5 6 4.2802 0.0021 0.0005 6 9 5.6311 0.0106 0.0005 7 6 3.5973 -1.1998 0.0005 8 6 2.2043 -1.2058 0.0057 9 6 1.4652 -2.4933 0.0125 10 7 0.1644 -2.6401 0.0195 11 8 -0.1275 -3.8172 0.0205 12 6 0.9884 -4.5645 0.0236 13 6 1.0598 -6.0372 0.0315 14 6 2.3069 -6.6761 0.0285 15 6 2.3776 -8.0363 0.0409 16 6 1.1938 -8.8014 0.0456 17 6 1.2620 -10.2094 0.0523 18 1 2.1372 -10.7058 0.4450 19 6 0.1942 -10.9651 -0.4507 20 7 -0.6923 -10.4053 -1.2310 21 14 0.0381 -12.7727 -0.0058 22 1 1.1605 -13.1619 0.8853 23 1 -1.2514 -13.0004 0.6948 24 1 0.0806 -13.5924 -1.2432 25 6 -0.0585 -8.1544 0.0431 26 6 -0.1197 -6.7937 0.0366 27 7 2.0103 -3.7263 0.0185 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 0.8899 0.5139 30 1 -0.3632 -0.8900 0.5139 31 1 1.6573 2.1301 -0.0004 32 1 4.1170 2.1354 0.0010 33 1 4.1425 -2.1321 0.0010 34 1 3.2135 -6.0891 0.0200 35 1 3.3393 -8.5278 0.0427 36 1 -1.4314 -10.9282 -1.5788 37 1 -0.9682 -8.7366 0.0463 38 1 -1.0788 -6.2971 0.0351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545700300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:51 Heat of formation + Delta-G solvation = 59.966999 kcal Electronic energy + Delta-G solvation = -25013.874669 eV Core-core repulsion = 21124.377393 eV Total energy + Delta-G solvation = -3889.497277 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.98383 -44.70802 -39.41294 -37.87208 -35.22914 -34.34980 -33.07965 -32.06164 -30.95293 -29.81075 -29.52354 -26.90898 -26.06303 -24.56102 -23.05507 -22.29978 -21.53115 -20.95104 -20.13316 -17.88670 -17.69666 -17.39949 -16.88001 -16.40140 -15.70883 -15.69977 -15.55891 -15.13143 -14.49239 -14.18621 -13.84460 -13.76640 -13.62463 -13.45705 -12.94036 -12.61836 -12.33554 -12.14083 -12.09077 -11.85871 -11.79173 -11.45872 -11.37125 -11.30197 -11.25049 -11.11431 -10.88270 -10.34183 -10.09621 -10.00868 -9.71722 -9.43901 -8.95741 -8.57978 -7.89944 -7.60231 -7.22769 -4.76794 0.62500 1.00319 1.45570 2.45485 2.76515 2.85950 2.89831 2.91706 3.21058 3.51270 3.59786 3.61595 3.73461 4.13808 4.28586 4.40981 4.72044 4.75822 4.88162 5.09343 5.35125 5.35870 5.55661 5.64732 5.68947 5.78779 5.92139 6.02677 6.04438 6.10326 6.22304 6.32255 6.46539 6.55583 6.61715 6.67241 6.72522 6.85576 6.97924 7.26473 7.49850 7.66836 7.71119 7.86131 8.20471 8.42084 8.54016 8.77590 9.67333 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.002391 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.917182 B =11708.527267 C =12632.082050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.098 4.098 4 C -0.139 4.139 5 C 0.087 3.913 6 F -0.138 7.138 7 C -0.109 4.109 8 C 0.018 3.982 9 C 0.208 3.792 10 N -0.399 5.399 11 O 0.050 5.950 12 C 0.289 3.711 13 C -0.202 4.202 14 C -0.017 4.017 15 C -0.233 4.233 16 C 0.128 3.872 17 C -0.423 4.423 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.758 5.758 21 Si 0.917 3.083 22 H -0.255 1.255 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.175 4.175 26 C -0.050 4.050 27 N -0.522 5.522 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.291 0.709 37 H 0.125 0.875 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 13.037 1.530 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.065 4.065 3 C -0.116 4.116 4 C -0.158 4.158 5 C 0.068 3.932 6 F -0.117 7.117 7 C -0.129 4.129 8 C 0.017 3.983 9 C -0.062 4.062 10 N -0.116 5.116 11 O -0.003 6.003 12 C 0.081 3.919 13 C -0.208 4.208 14 C -0.037 4.037 15 C -0.253 4.253 16 C 0.124 3.876 17 C -0.449 4.449 18 H 0.108 0.892 19 C -0.153 4.153 20 N -0.380 5.380 21 Si 0.740 3.260 22 H -0.179 1.179 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.194 4.194 26 C -0.071 4.071 27 N -0.256 5.256 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.398 13.743 1.377 13.882 hybrid contribution 0.123 -0.884 -0.023 0.893 sum 1.521 12.859 1.354 13.019 Atomic orbital electron populations 1.21176 0.89791 1.04353 1.03275 1.20072 0.97245 0.91454 0.97689 1.20790 0.92942 0.97668 1.00177 1.21223 0.94911 0.97144 1.02570 1.17455 0.77041 0.94137 1.04578 1.91507 1.28701 1.97377 1.94087 1.21186 0.93519 0.98144 1.00070 1.17065 0.91209 0.87812 1.02251 1.23473 0.87552 0.93256 1.01943 1.74736 1.15653 0.96474 1.24742 1.85318 1.35302 1.11632 1.68049 1.26621 0.78740 0.95990 0.90543 1.16643 0.95307 0.81162 1.27666 1.20309 0.94690 0.94338 0.94327 1.20683 0.97572 0.92697 1.14330 1.17864 0.91280 0.93316 0.85145 1.19996 1.01960 0.91536 1.31458 0.89172 1.26199 0.94207 1.02382 0.92480 1.69757 1.09861 1.39311 1.19062 0.86097 0.79948 0.80267 0.79726 1.17859 1.19153 1.19458 1.20962 0.98488 0.92449 1.07548 1.20474 0.95139 0.94477 0.96980 1.72237 1.28618 0.97863 1.26914 0.90754 0.91612 0.88213 0.84458 0.84466 0.83312 0.87663 0.87815 0.89795 0.85771 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.20 36.01 0.33 -1.21 16 2 C -0.06 -0.80 5.91 -104.30 -0.62 -1.42 16 3 C -0.10 -0.99 9.69 -39.64 -0.38 -1.37 16 4 C -0.14 -1.43 10.02 -39.46 -0.40 -1.82 16 5 C 0.09 1.10 7.29 -39.47 -0.29 0.81 16 6 F -0.14 -1.78 17.26 2.25 0.04 -1.75 16 7 C -0.11 -1.58 9.68 -39.19 -0.38 -1.95 16 8 C 0.02 0.29 5.88 -104.90 -0.62 -0.33 16 9 C 0.21 3.85 7.66 -156.34 -1.20 2.65 16 10 N -0.40 -7.44 8.68 31.25 0.27 -7.16 16 11 O 0.05 0.99 11.09 16.38 0.18 1.18 16 12 C 0.29 6.01 7.98 -13.88 -0.11 5.90 16 13 C -0.20 -4.39 5.89 -104.73 -0.62 -5.01 16 14 C -0.02 -0.36 9.63 -39.60 -0.38 -0.74 16 15 C -0.23 -5.16 9.73 -39.28 -0.38 -5.54 16 16 C 0.13 3.02 5.57 -106.80 -0.60 2.43 16 17 C -0.42 -9.69 9.03 -37.83 -0.34 -10.04 16 18 H 0.09 1.96 7.91 -52.48 -0.42 1.54 16 19 C 0.07 1.53 5.13 -17.32 -0.09 1.44 16 20 N -0.76 -16.99 10.96 55.56 0.61 -16.38 16 21 Si 0.92 16.03 29.60 -169.99 -5.03 11.00 16 22 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 23 H -0.27 -4.62 7.11 56.52 0.40 -4.21 16 24 H -0.27 -4.68 7.11 56.52 0.40 -4.27 16 25 C -0.18 -4.05 8.63 -39.28 -0.34 -4.39 16 26 C -0.05 -1.09 9.66 -39.60 -0.38 -1.48 16 27 N -0.52 -10.59 10.92 -10.23 -0.11 -10.70 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.10 1.43 5.14 -51.93 -0.27 1.16 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.15 2.23 7.87 -52.49 -0.41 1.82 16 34 H 0.11 2.12 7.85 -52.48 -0.41 1.71 16 35 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 36 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 37 H 0.12 2.91 6.16 -52.48 -0.32 2.59 16 38 H 0.10 1.97 7.92 -52.49 -0.42 1.56 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -24.77 337.97 -9.22 -34.00 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.49 Total: 6.80 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -6.78 Total: -22.07 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.77 Total: -34.24 kcal Atomic # 8 Polarization: 0.99 SS G_CDS: 0.18 Total: 1.18 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -24.77 -9.22 -34.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545700300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.963 kcal (2) G-P(sol) polarization free energy of solvation -24.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds