Wall clock time and date at job start Tue Mar 31 2020 13:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38058 * 120.03037 * 2 1 4 4 C 1.38262 * 120.14415 * 179.97438 * 3 2 1 5 5 C 1.38556 * 120.21467 * 0.02562 * 4 3 2 6 6 F 1.35099 * 119.96650 * 179.97438 * 5 4 3 7 7 C 1.38233 * 120.06921 * 359.97438 * 5 4 3 8 8 C 1.39294 * 120.03825 * 179.72681 * 2 1 3 9 9 C 1.48453 * 120.10466 * 359.97438 * 8 2 1 10 10 N 1.30913 * 126.29579 * 359.68758 * 9 8 2 11 11 O 1.21273 * 110.36421 * 179.84116 * 10 9 8 12 12 C 1.34303 * 109.88301 * 0.43185 * 11 10 9 13 13 C 1.47443 * 126.58600 * 179.71782 * 12 11 10 14 14 C 1.40122 * 119.90303 * 179.74648 * 13 12 11 15 15 C 1.36210 * 120.10312 * 179.75608 * 14 13 12 16 16 C 1.40960 * 119.89654 * 0.51713 * 15 14 13 17 17 C 1.40966 * 120.10010 * 179.71809 * 16 15 14 18 18 H 1.08003 * 119.99968 * 24.71071 * 17 16 15 19 19 C 1.40157 * 119.99939 * 204.72022 * 17 16 15 20 20 N 1.30695 * 120.00119 * 17.92979 * 19 17 16 21 21 Si 1.86798 * 119.99855 * 197.93000 * 19 17 16 22 22 H 1.48507 * 109.47319 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47107 * 119.99577 * 21 19 17 24 24 H 1.48491 * 109.47340 * 239.99782 * 21 19 17 25 25 C 1.40958 * 119.80162 * 359.74076 * 16 15 14 26 26 C 1.36207 * 119.89786 * 359.97438 * 25 16 15 27 27 N 1.32166 * 106.83233 * 359.73336 * 12 11 10 28 28 H 1.08995 * 109.47430 * 90.00535 * 1 2 3 29 29 H 1.08998 * 109.47141 * 329.99724 * 1 2 3 30 30 H 1.09004 * 109.46449 * 209.99999 * 1 2 3 31 31 H 1.07994 * 119.92868 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.89460 * 180.02562 * 4 3 2 33 33 H 1.07993 * 120.07940 * 180.02562 * 7 5 4 34 34 H 1.08006 * 119.94837 * 359.97438 * 14 13 12 35 35 H 1.08003 * 120.04897 * 180.25256 * 15 14 13 36 36 H 0.96994 * 120.00198 * 180.02562 * 20 19 17 37 37 H 1.08004 * 120.05539 * 179.97438 * 25 16 15 38 38 H 1.08002 * 119.95064 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1953 0.0000 4 6 3.5805 1.1980 0.0005 5 6 4.2802 0.0021 0.0005 6 9 5.6311 0.0106 0.0005 7 6 3.5973 -1.1998 0.0005 8 6 2.2043 -1.2058 0.0057 9 6 1.4652 -2.4933 0.0125 10 7 0.1644 -2.6401 0.0195 11 8 -0.1275 -3.8172 0.0205 12 6 0.9884 -4.5645 0.0236 13 6 1.0598 -6.0372 0.0315 14 6 2.3069 -6.6761 0.0285 15 6 2.3776 -8.0363 0.0409 16 6 1.1938 -8.8014 0.0456 17 6 1.2620 -10.2094 0.0523 18 1 2.1372 -10.7058 0.4450 19 6 0.1942 -10.9651 -0.4507 20 7 -0.6923 -10.4053 -1.2310 21 14 0.0381 -12.7727 -0.0058 22 1 1.1605 -13.1619 0.8853 23 1 -1.2514 -13.0004 0.6948 24 1 0.0806 -13.5924 -1.2432 25 6 -0.0585 -8.1544 0.0431 26 6 -0.1197 -6.7937 0.0366 27 7 2.0103 -3.7263 0.0185 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 0.8899 0.5139 30 1 -0.3632 -0.8900 0.5139 31 1 1.6573 2.1301 -0.0004 32 1 4.1170 2.1354 0.0010 33 1 4.1425 -2.1321 0.0010 34 1 3.2135 -6.0891 0.0200 35 1 3.3393 -8.5278 0.0427 36 1 -1.4314 -10.9282 -1.5788 37 1 -0.9682 -8.7366 0.0463 38 1 -1.0788 -6.2971 0.0351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545700300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:50 Heat of formation + Delta-G solvation = 50.121008 kcal Electronic energy + Delta-G solvation = -25014.301624 eV Core-core repulsion = 21124.377393 eV Total energy + Delta-G solvation = -3889.924231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.97129 -46.22947 -40.40751 -39.59273 -36.72298 -35.97742 -34.35647 -33.25652 -32.21512 -31.47056 -31.13755 -27.96030 -27.67019 -25.82185 -24.57218 -23.51629 -22.85811 -22.61778 -21.51599 -19.42489 -19.16140 -18.93170 -18.10142 -17.66481 -17.19031 -16.69251 -16.59168 -16.54203 -15.81606 -15.73605 -15.24512 -14.78269 -14.72637 -14.57527 -14.41778 -14.04547 -13.94825 -13.77657 -13.42718 -13.22500 -12.93199 -12.83351 -12.80227 -12.59572 -12.49040 -12.41128 -12.28077 -11.80678 -11.67499 -11.53901 -11.41404 -11.03724 -10.03956 -9.65074 -9.60532 -9.31324 -8.86311 -6.51586 -0.50939 -0.11723 0.04700 0.99122 1.13656 1.38775 1.42804 1.57576 1.69854 1.93187 2.15135 2.45749 2.51023 2.62399 2.93875 3.30885 3.59913 3.73389 3.81301 3.88078 4.08731 4.15239 4.35195 4.37370 4.54962 4.69995 4.75920 4.77081 4.88941 4.89500 4.93078 4.98096 5.03004 5.10777 5.13076 5.23072 5.32426 5.45933 5.54185 5.75793 5.77111 5.93241 5.96329 6.13087 6.47000 6.68794 6.79646 7.22064 8.07558 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.002391 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.917182 B =11708.527267 C =12632.082050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 C -0.082 4.082 4 C -0.118 4.118 5 C 0.078 3.922 6 F -0.142 7.142 7 C -0.123 4.123 8 C -0.017 4.017 9 C 0.210 3.790 10 N -0.396 5.396 11 O 0.042 5.958 12 C 0.281 3.719 13 C -0.210 4.210 14 C -0.019 4.019 15 C -0.243 4.243 16 C 0.103 3.897 17 C -0.448 4.448 18 H 0.095 0.905 19 C 0.035 3.965 20 N -0.787 5.787 21 Si 0.990 3.010 22 H -0.253 1.253 23 H -0.262 1.262 24 H -0.264 1.264 25 C -0.192 4.192 26 C -0.050 4.050 27 N -0.533 5.533 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.300 0.700 37 H 0.117 0.883 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 15.302 1.696 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.066 4.066 3 C -0.100 4.100 4 C -0.137 4.137 5 C 0.059 3.941 6 F -0.121 7.121 7 C -0.143 4.143 8 C -0.019 4.019 9 C -0.060 4.060 10 N -0.115 5.115 11 O -0.009 6.009 12 C 0.071 3.929 13 C -0.215 4.215 14 C -0.039 4.039 15 C -0.263 4.263 16 C 0.099 3.901 17 C -0.475 4.475 18 H 0.113 0.887 19 C -0.186 4.186 20 N -0.410 5.410 21 Si 0.809 3.191 22 H -0.176 1.176 23 H -0.186 1.186 24 H -0.188 1.188 25 C -0.212 4.212 26 C -0.070 4.070 27 N -0.268 5.268 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.199 0.801 32 H 0.193 0.807 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.456 16.013 1.539 16.153 hybrid contribution 0.149 -1.329 -0.093 1.340 sum 1.605 14.685 1.445 14.843 Atomic orbital electron populations 1.21164 0.89246 1.04600 1.03427 1.20333 0.97797 0.91449 0.97036 1.21244 0.92917 0.98072 0.97758 1.21668 0.95120 0.97441 0.99444 1.17600 0.76970 0.94437 1.05124 1.91499 1.28990 1.97394 1.94179 1.21097 0.93373 0.98567 1.01312 1.17227 0.91573 0.87460 1.05648 1.24058 0.87566 0.93902 1.00494 1.74810 1.15776 0.95642 1.25243 1.85315 1.35173 1.12140 1.68230 1.26514 0.79359 0.95821 0.91167 1.16768 0.95404 0.81836 1.27525 1.20433 0.95104 0.94299 0.94051 1.20854 0.97835 0.92986 1.14587 1.18187 0.91838 0.94200 0.85877 1.20276 1.03150 0.91674 1.32402 0.88670 1.27026 0.93306 1.06514 0.91709 1.69780 1.10444 1.41254 1.19519 0.85021 0.79926 0.74681 0.79467 1.17622 1.18600 1.18822 1.20956 0.98245 0.92963 1.09011 1.20623 0.95963 0.94140 0.96249 1.72229 1.28870 0.98793 1.26919 0.90568 0.88278 0.90924 0.80112 0.80714 0.85113 0.86736 0.86609 0.88808 0.86556 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.20 71.24 0.66 -2.10 16 2 C -0.06 -1.49 5.91 -19.65 -0.12 -1.61 16 3 C -0.08 -1.29 9.69 22.23 0.22 -1.07 16 4 C -0.12 -1.91 10.02 22.35 0.22 -1.69 16 5 C 0.08 1.82 7.29 22.34 0.16 1.99 16 6 F -0.14 -3.46 17.26 44.97 0.78 -2.68 16 7 C -0.12 -3.55 9.68 22.53 0.22 -3.33 16 8 C -0.02 -0.53 5.88 -20.04 -0.12 -0.64 16 9 C 0.21 7.89 7.66 137.39 1.05 8.95 16 10 N -0.40 -14.96 8.68 -57.44 -0.50 -15.46 16 11 O 0.04 1.70 11.09 68.68 0.76 2.46 16 12 C 0.28 12.00 7.98 87.15 0.70 12.70 16 13 C -0.21 -9.41 5.89 -19.94 -0.12 -9.52 16 14 C -0.02 -0.84 9.63 22.25 0.21 -0.63 16 15 C -0.24 -11.08 9.73 22.46 0.22 -10.86 16 16 C 0.10 5.03 5.57 -21.28 -0.12 4.91 16 17 C -0.45 -21.04 9.03 23.40 0.21 -20.83 16 18 H 0.10 4.21 7.91 -2.91 -0.02 4.18 16 19 C 0.04 1.53 5.13 85.33 0.44 1.97 16 20 N -0.79 -35.90 10.96 21.86 0.24 -35.66 16 21 Si 0.99 32.57 29.60 68.60 2.03 34.60 16 22 H -0.25 -8.15 7.11 99.48 0.71 -7.45 16 23 H -0.26 -8.33 7.11 99.48 0.71 -7.63 16 24 H -0.26 -8.37 7.11 99.48 0.71 -7.67 16 25 C -0.19 -9.24 8.63 22.46 0.19 -9.04 16 26 C -0.05 -2.23 9.66 22.26 0.21 -2.01 16 27 N -0.53 -22.25 10.92 -302.03 -3.30 -25.55 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 30 H 0.07 2.01 5.14 -2.39 -0.01 2.00 16 31 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.13 4.13 7.87 -2.91 -0.02 4.10 16 34 H 0.11 4.76 7.85 -2.91 -0.02 4.73 16 35 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.30 12.10 8.29 -92.71 -0.77 11.34 16 37 H 0.12 5.68 6.16 -2.91 -0.02 5.66 16 38 H 0.12 4.69 7.92 -2.91 -0.02 4.66 16 Total: -1.00 -55.86 337.97 5.38 -50.48 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 1.12 Total: 24.63 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 4.25 Total: -32.83 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.56 Total: -76.66 kcal Atomic # 8 Polarization: 1.70 SS G_CDS: 0.76 Total: 2.46 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 32.57 SS G_CDS: 2.03 Total: 34.60 kcal Total: -55.86 5.38 -50.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545700300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.605 kcal (2) G-P(sol) polarization free energy of solvation -55.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds