Wall clock time and date at job start Tue Mar 31 2020 13:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37975 * 120.05070 * 2 1 4 4 C 1.38537 * 120.09541 * 179.97438 * 3 2 1 5 5 F 1.35104 * 119.90580 * 180.02562 * 4 3 2 6 6 C 1.38588 * 120.18813 * 0.02562 * 4 3 2 7 7 C 1.37933 * 120.09001 * 359.97438 * 6 4 3 8 8 C 1.39329 * 120.04424 * 179.97438 * 2 1 3 9 9 C 1.48405 * 120.09595 * 0.02564 * 8 2 1 10 10 N 1.30945 * 126.29687 * 359.68379 * 9 8 2 11 11 O 1.21269 * 110.35777 * 179.84319 * 10 9 8 12 12 C 1.34300 * 109.88985 * 0.42793 * 11 10 9 13 13 C 1.47447 * 126.58128 * 179.71405 * 12 11 10 14 14 C 1.40129 * 119.89911 * 179.75030 * 13 12 11 15 15 C 1.36203 * 120.10334 * 179.75562 * 14 13 12 16 16 C 1.40972 * 119.89403 * 0.52318 * 15 14 13 17 17 C 1.40965 * 120.09812 * 179.71222 * 16 15 14 18 18 H 1.08004 * 119.99978 * 24.72040 * 17 16 15 19 19 C 1.40154 * 119.99986 * 204.71065 * 17 16 15 20 20 N 1.30696 * 119.99797 * 17.94047 * 19 17 16 21 21 Si 1.86801 * 120.00124 * 197.93373 * 19 17 16 22 22 H 1.48499 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46628 * 120.00089 * 21 19 17 24 24 H 1.48492 * 109.47084 * 240.00427 * 21 19 17 25 25 C 1.40959 * 119.80275 * 359.73170 * 16 15 14 26 26 C 1.36215 * 119.89386 * 0.02562 * 25 16 15 27 27 N 1.32160 * 106.84012 * 359.73824 * 12 11 10 28 28 H 1.09005 * 109.46931 * 90.00556 * 1 2 3 29 29 H 1.08997 * 109.47252 * 210.00105 * 1 2 3 30 30 H 1.08996 * 109.47437 * 330.00386 * 1 2 3 31 31 H 1.08001 * 119.94995 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.95121 * 180.02562 * 6 4 3 33 33 H 1.08000 * 120.04494 * 179.74454 * 7 6 4 34 34 H 1.07997 * 119.94904 * 0.02562 * 14 13 12 35 35 H 1.07997 * 120.05439 * 180.25261 * 15 14 13 36 36 H 0.97001 * 120.00315 * 180.02562 * 20 19 17 37 37 H 1.07994 * 120.05608 * 179.97438 * 25 16 15 38 38 H 1.08001 * 119.94303 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5833 1.1954 0.0005 5 9 4.2560 2.3670 0.0011 6 6 4.2811 -0.0020 0.0005 7 6 3.5982 -1.2004 0.0005 8 6 2.2046 -1.2061 0.0005 9 6 1.4657 -2.4931 0.0005 10 7 0.1645 -2.6399 0.0059 11 8 -0.1273 -3.8170 0.0011 12 6 0.9886 -4.5643 0.0014 13 6 1.0598 -6.0371 0.0024 14 6 2.3070 -6.6761 -0.0028 15 6 2.3776 -8.0363 0.0032 16 6 1.1936 -8.8014 0.0033 17 6 1.2618 -10.2094 0.0034 18 1 2.1366 -10.7077 0.3944 19 6 0.1942 -10.9626 -0.5039 20 7 -0.6916 -10.3989 -1.2821 21 14 0.0376 -12.7722 -0.0678 22 1 1.1594 -13.1658 0.8221 23 1 -1.2523 -13.0031 0.6308 24 1 0.0810 -13.5861 -1.3091 25 6 -0.0587 -8.1542 0.0031 26 6 -0.1196 -6.7935 0.0022 27 7 2.0106 -3.7264 0.0011 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6579 2.1296 -0.0004 32 1 5.3611 0.0033 0.0014 33 1 4.1427 -2.1331 -0.0036 34 1 3.2135 -6.0891 -0.0070 35 1 3.3392 -8.5279 0.0033 36 1 -1.4307 -10.9201 -1.6330 37 1 -0.9683 -8.7363 0.0028 38 1 -1.0787 -6.2968 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546503521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:57 Heat of formation + Delta-G solvation = 59.092426 kcal Electronic energy + Delta-G solvation = -24925.300513 eV Core-core repulsion = 21035.765312 eV Total energy + Delta-G solvation = -3889.535201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.10122 -44.68504 -39.41107 -37.87334 -35.17583 -34.33993 -33.26896 -32.15710 -30.58558 -29.74912 -29.48932 -27.37847 -26.05874 -24.29859 -22.98740 -22.31354 -21.58299 -20.95346 -20.12839 -17.71686 -17.50108 -17.39919 -17.33254 -16.55392 -15.83585 -15.80127 -15.64166 -15.05987 -14.21568 -14.14945 -13.78665 -13.73361 -13.51115 -13.38182 -12.94607 -12.80309 -12.33863 -12.27919 -12.16837 -12.06397 -11.76307 -11.40056 -11.37379 -11.25369 -11.19738 -11.08377 -10.87905 -10.34038 -10.08031 -9.97657 -9.71928 -9.41574 -9.10377 -8.53104 -7.90176 -7.59975 -7.22873 -4.76954 0.60867 1.03834 1.45724 2.44786 2.76123 2.85705 2.89441 2.91433 3.20947 3.53757 3.60402 3.62279 3.85388 4.02032 4.28456 4.38769 4.61517 4.68296 4.95528 5.21248 5.35640 5.42765 5.45966 5.63956 5.67302 5.77882 5.91236 6.01788 6.04702 6.09569 6.26559 6.31346 6.45276 6.55181 6.61571 6.66699 6.72425 6.85435 6.97884 7.26184 7.49646 7.66603 7.70984 7.85908 8.20320 8.41910 8.53831 8.79482 9.67220 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.035885 B = 0.002237 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.073052 B =12514.093046 C =13205.071641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.023 4.023 3 C -0.161 4.161 4 C 0.111 3.889 5 F -0.139 7.139 6 C -0.164 4.164 7 C -0.044 4.044 8 C -0.022 4.022 9 C 0.211 3.789 10 N -0.403 5.403 11 O 0.049 5.951 12 C 0.288 3.712 13 C -0.202 4.202 14 C -0.017 4.017 15 C -0.233 4.233 16 C 0.128 3.872 17 C -0.423 4.423 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.758 5.758 21 Si 0.917 3.083 22 H -0.255 1.255 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.175 4.175 26 C -0.051 4.051 27 N -0.523 5.523 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.291 0.709 37 H 0.124 0.876 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 11.793 1.584 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 C -0.180 4.180 4 C 0.091 3.909 5 F -0.118 7.118 6 C -0.183 4.183 7 C -0.064 4.064 8 C -0.024 4.024 9 C -0.059 4.059 10 N -0.121 5.121 11 O -0.004 6.004 12 C 0.080 3.920 13 C -0.207 4.207 14 C -0.037 4.037 15 C -0.253 4.253 16 C 0.124 3.876 17 C -0.450 4.450 18 H 0.108 0.892 19 C -0.153 4.153 20 N -0.380 5.380 21 Si 0.740 3.260 22 H -0.179 1.179 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.195 4.195 26 C -0.071 4.071 27 N -0.257 5.257 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.204 12.547 1.433 12.819 hybrid contribution -0.032 -0.633 -0.027 0.635 sum 2.171 11.913 1.406 12.191 Atomic orbital electron populations 1.21213 0.89551 1.04508 1.03481 1.19821 0.97077 0.90733 0.94929 1.20880 0.92107 0.98961 1.06056 1.17814 0.90130 0.81232 1.01677 1.91499 1.80474 1.46051 1.93764 1.21053 1.01066 0.90711 1.05480 1.21111 0.92524 0.98460 0.94292 1.17383 0.92315 0.87591 1.05062 1.23503 0.87511 0.93306 1.01580 1.74740 1.15768 0.96453 1.25094 1.85313 1.35286 1.11657 1.68112 1.26613 0.78805 0.95978 0.90559 1.16643 0.95290 0.81196 1.27605 1.20300 0.94679 0.94320 0.94374 1.20683 0.97559 0.92705 1.14368 1.17867 0.91280 0.93315 0.85162 1.19989 1.01982 0.91549 1.31455 0.89186 1.26198 0.94214 1.02374 0.92480 1.69759 1.09889 1.39321 1.19041 0.86099 0.79944 0.80294 0.79713 1.17865 1.19158 1.19466 1.20964 0.98488 0.92461 1.07549 1.20475 0.95158 0.94479 0.96971 1.72220 1.28617 0.97864 1.27032 0.90488 0.87972 0.91506 0.84289 0.84138 0.83495 0.87664 0.87827 0.89802 0.85785 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.19 36.01 0.33 -1.26 16 2 C -0.02 -0.31 5.91 -104.31 -0.62 -0.92 16 3 C -0.16 -1.82 9.67 -39.57 -0.38 -2.21 16 4 C 0.11 1.29 7.30 -39.34 -0.29 1.00 16 5 F -0.14 -1.60 17.26 2.25 0.04 -1.56 16 6 C -0.16 -1.85 10.01 -39.56 -0.40 -2.25 16 7 C -0.04 -0.58 9.70 -39.27 -0.38 -0.96 16 8 C -0.02 -0.33 5.88 -104.89 -0.62 -0.94 16 9 C 0.21 3.84 7.66 -156.33 -1.20 2.64 16 10 N -0.40 -7.47 8.69 31.26 0.27 -7.19 16 11 O 0.05 0.96 11.09 16.39 0.18 1.15 16 12 C 0.29 5.93 7.98 -13.88 -0.11 5.82 16 13 C -0.20 -4.34 5.89 -104.73 -0.62 -4.95 16 14 C -0.02 -0.35 9.63 -39.60 -0.38 -0.74 16 15 C -0.23 -5.11 9.73 -39.28 -0.38 -5.49 16 16 C 0.13 3.00 5.57 -106.80 -0.60 2.40 16 17 C -0.42 -9.64 9.03 -37.83 -0.34 -9.99 16 18 H 0.09 1.94 7.91 -52.48 -0.42 1.53 16 19 C 0.07 1.52 5.13 -17.32 -0.09 1.43 16 20 N -0.76 -16.94 10.96 55.56 0.61 -16.33 16 21 Si 0.92 15.96 29.60 -169.99 -5.03 10.93 16 22 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 23 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 24 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 25 C -0.18 -4.03 8.63 -39.28 -0.34 -4.37 16 26 C -0.05 -1.09 9.65 -39.60 -0.38 -1.47 16 27 N -0.52 -10.36 10.92 -10.22 -0.11 -10.48 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.47 5.16 -51.93 -0.27 1.20 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.15 1.91 7.87 -52.49 -0.41 1.50 16 34 H 0.11 2.08 7.85 -52.49 -0.41 1.66 16 35 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.29 5.79 8.29 -40.82 -0.34 5.45 16 37 H 0.12 2.90 6.16 -52.49 -0.32 2.57 16 38 H 0.10 1.97 7.92 -52.49 -0.42 1.55 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -24.42 337.98 -9.23 -33.65 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -3.49 Total: 7.01 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -6.78 Total: -22.27 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.77 Total: -34.00 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: 0.18 Total: 1.15 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 15.96 SS G_CDS: -5.03 Total: 10.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -24.42 -9.23 -33.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546503521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.742 kcal (2) G-P(sol) polarization free energy of solvation -24.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds