Wall clock time and date at job start Tue Mar 31 2020 13:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37975 * 120.05070 * 2 1 4 4 C 1.38537 * 120.09541 * 179.97438 * 3 2 1 5 5 F 1.35104 * 119.90580 * 180.02562 * 4 3 2 6 6 C 1.38588 * 120.18813 * 0.02562 * 4 3 2 7 7 C 1.37933 * 120.09001 * 359.97438 * 6 4 3 8 8 C 1.39329 * 120.04424 * 179.97438 * 2 1 3 9 9 C 1.48405 * 120.09595 * 0.02564 * 8 2 1 10 10 N 1.30945 * 126.29687 * 359.68379 * 9 8 2 11 11 O 1.21269 * 110.35777 * 179.84319 * 10 9 8 12 12 C 1.34300 * 109.88985 * 0.42793 * 11 10 9 13 13 C 1.47447 * 126.58128 * 179.71405 * 12 11 10 14 14 C 1.40129 * 119.89911 * 179.75030 * 13 12 11 15 15 C 1.36203 * 120.10334 * 179.75562 * 14 13 12 16 16 C 1.40972 * 119.89403 * 0.52318 * 15 14 13 17 17 C 1.40965 * 120.09812 * 179.71222 * 16 15 14 18 18 H 1.08004 * 119.99978 * 24.72040 * 17 16 15 19 19 C 1.40154 * 119.99986 * 204.71065 * 17 16 15 20 20 N 1.30696 * 119.99797 * 17.94047 * 19 17 16 21 21 Si 1.86801 * 120.00124 * 197.93373 * 19 17 16 22 22 H 1.48499 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46628 * 120.00089 * 21 19 17 24 24 H 1.48492 * 109.47084 * 240.00427 * 21 19 17 25 25 C 1.40959 * 119.80275 * 359.73170 * 16 15 14 26 26 C 1.36215 * 119.89386 * 0.02562 * 25 16 15 27 27 N 1.32160 * 106.84012 * 359.73824 * 12 11 10 28 28 H 1.09005 * 109.46931 * 90.00556 * 1 2 3 29 29 H 1.08997 * 109.47252 * 210.00105 * 1 2 3 30 30 H 1.08996 * 109.47437 * 330.00386 * 1 2 3 31 31 H 1.08001 * 119.94995 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.95121 * 180.02562 * 6 4 3 33 33 H 1.08000 * 120.04494 * 179.74454 * 7 6 4 34 34 H 1.07997 * 119.94904 * 0.02562 * 14 13 12 35 35 H 1.07997 * 120.05439 * 180.25261 * 15 14 13 36 36 H 0.97001 * 120.00315 * 180.02562 * 20 19 17 37 37 H 1.07994 * 120.05608 * 179.97438 * 25 16 15 38 38 H 1.08001 * 119.94303 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5833 1.1954 0.0005 5 9 4.2560 2.3670 0.0011 6 6 4.2811 -0.0020 0.0005 7 6 3.5982 -1.2004 0.0005 8 6 2.2046 -1.2061 0.0005 9 6 1.4657 -2.4931 0.0005 10 7 0.1645 -2.6399 0.0059 11 8 -0.1273 -3.8170 0.0011 12 6 0.9886 -4.5643 0.0014 13 6 1.0598 -6.0371 0.0024 14 6 2.3070 -6.6761 -0.0028 15 6 2.3776 -8.0363 0.0032 16 6 1.1936 -8.8014 0.0033 17 6 1.2618 -10.2094 0.0034 18 1 2.1366 -10.7077 0.3944 19 6 0.1942 -10.9626 -0.5039 20 7 -0.6916 -10.3989 -1.2821 21 14 0.0376 -12.7722 -0.0678 22 1 1.1594 -13.1658 0.8221 23 1 -1.2523 -13.0031 0.6308 24 1 0.0810 -13.5861 -1.3091 25 6 -0.0587 -8.1542 0.0031 26 6 -0.1196 -6.7935 0.0022 27 7 2.0106 -3.7264 0.0011 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6579 2.1296 -0.0004 32 1 5.3611 0.0033 0.0014 33 1 4.1427 -2.1331 -0.0036 34 1 3.2135 -6.0891 -0.0070 35 1 3.3392 -8.5279 0.0033 36 1 -1.4307 -10.9201 -1.6330 37 1 -0.9683 -8.7363 0.0028 38 1 -1.0787 -6.2968 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546503521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:56 Heat of formation + Delta-G solvation = 49.964526 kcal Electronic energy + Delta-G solvation = -24925.696328 eV Core-core repulsion = 21035.765312 eV Total energy + Delta-G solvation = -3889.931017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.01534 -46.18703 -40.41569 -39.57064 -36.66160 -35.94836 -34.43737 -33.46746 -31.93734 -31.36845 -30.99177 -28.37251 -27.69657 -25.60423 -24.47652 -23.45740 -22.90611 -22.61466 -21.52178 -19.40254 -18.91388 -18.88190 -18.30609 -17.68641 -17.29711 -16.94073 -16.71159 -16.51091 -15.79406 -15.38598 -15.14625 -14.77900 -14.59536 -14.44395 -14.38578 -14.02351 -13.94385 -13.79206 -13.50551 -13.34238 -13.17228 -12.90851 -12.79562 -12.62160 -12.45942 -12.35862 -12.14542 -11.80269 -11.64733 -11.50252 -11.39468 -11.00897 -10.04558 -9.66713 -9.61560 -9.27811 -8.84825 -6.49814 -0.51906 -0.10524 0.10422 0.99684 1.15676 1.39074 1.43360 1.58081 1.71025 1.97369 2.15831 2.50537 2.55458 2.64158 3.04797 3.10283 3.61951 3.62971 3.72411 4.02207 4.10129 4.26129 4.37127 4.41205 4.55116 4.57400 4.70628 4.76600 4.85191 4.93955 4.95337 4.97914 5.00750 5.10887 5.15723 5.24490 5.33843 5.41514 5.56126 5.73068 5.78790 5.95300 5.98436 6.15083 6.48951 6.70687 6.81681 7.26226 8.08926 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.035885 B = 0.002237 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.073052 B =12514.093046 C =13205.071641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.026 4.026 3 C -0.153 4.153 4 C 0.116 3.884 5 F -0.135 7.135 6 C -0.156 4.156 7 C -0.048 4.048 8 C -0.055 4.055 9 C 0.214 3.786 10 N -0.403 5.403 11 O 0.040 5.960 12 C 0.280 3.720 13 C -0.209 4.209 14 C -0.018 4.018 15 C -0.243 4.243 16 C 0.103 3.897 17 C -0.449 4.449 18 H 0.095 0.905 19 C 0.035 3.965 20 N -0.789 5.789 21 Si 0.989 3.011 22 H -0.253 1.253 23 H -0.262 1.262 24 H -0.264 1.264 25 C -0.193 4.193 26 C -0.051 4.051 27 N -0.528 5.528 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.300 0.700 37 H 0.115 0.885 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 13.235 1.761 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.029 4.029 3 C -0.172 4.172 4 C 0.096 3.904 5 F -0.114 7.114 6 C -0.175 4.175 7 C -0.068 4.068 8 C -0.057 4.057 9 C -0.056 4.056 10 N -0.122 5.122 11 O -0.010 6.010 12 C 0.070 3.930 13 C -0.214 4.214 14 C -0.037 4.037 15 C -0.263 4.263 16 C 0.099 3.901 17 C -0.476 4.476 18 H 0.113 0.887 19 C -0.186 4.186 20 N -0.411 5.411 21 Si 0.808 3.192 22 H -0.176 1.176 23 H -0.187 1.187 24 H -0.189 1.189 25 C -0.213 4.213 26 C -0.071 4.071 27 N -0.263 5.263 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.185 0.815 32 H 0.184 0.816 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.914 13.998 1.607 14.388 hybrid contribution -0.194 -0.810 -0.097 0.839 sum 2.720 13.188 1.510 13.550 Atomic orbital electron populations 1.21187 0.89088 1.04657 1.03615 1.19945 0.97539 0.90614 0.94765 1.21105 0.92170 0.99282 1.04605 1.17921 0.90353 0.81358 1.00775 1.91519 1.80413 1.45828 1.93609 1.21262 1.02348 0.89796 1.04045 1.21135 0.91852 0.99267 0.94529 1.17595 0.93150 0.86911 1.08013 1.24062 0.87452 0.93956 1.00101 1.74815 1.16087 0.95656 1.25655 1.85313 1.35245 1.12161 1.68297 1.26513 0.79432 0.95812 0.91219 1.16768 0.95376 0.81881 1.27353 1.20445 0.95145 0.94240 0.93917 1.20864 0.97785 0.93060 1.14570 1.18194 0.91875 0.94192 0.85879 1.20264 1.03152 0.91716 1.32472 0.88672 1.27017 0.93347 1.06474 0.91715 1.69786 1.10507 1.41232 1.19594 0.85032 0.79896 0.74779 0.79453 1.17582 1.18691 1.18872 1.20951 0.98247 0.92993 1.09080 1.20621 0.96021 0.94142 0.96303 1.72205 1.28662 0.98582 1.26864 0.90312 0.90364 0.88687 0.81533 0.81561 0.83803 0.86371 0.86534 0.88876 0.86705 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.19 71.24 0.65 -2.26 16 2 C -0.03 -0.64 5.91 -19.66 -0.12 -0.76 16 3 C -0.15 -2.98 9.67 22.28 0.22 -2.76 16 4 C 0.12 2.31 7.30 22.42 0.16 2.47 16 5 F -0.14 -2.63 17.26 44.97 0.78 -1.86 16 6 C -0.16 -3.09 10.01 22.28 0.22 -2.87 16 7 C -0.05 -1.20 9.70 22.47 0.22 -0.98 16 8 C -0.05 -1.60 5.88 -20.04 -0.12 -1.72 16 9 C 0.21 7.77 7.66 137.36 1.05 8.82 16 10 N -0.40 -14.99 8.69 -57.41 -0.50 -15.49 16 11 O 0.04 1.58 11.09 68.71 0.76 2.35 16 12 C 0.28 11.63 7.98 87.15 0.70 12.33 16 13 C -0.21 -9.12 5.89 -19.94 -0.12 -9.24 16 14 C -0.02 -0.76 9.63 22.25 0.21 -0.54 16 15 C -0.24 -10.85 9.73 22.47 0.22 -10.63 16 16 C 0.10 4.95 5.57 -21.27 -0.12 4.83 16 17 C -0.45 -20.90 9.03 23.40 0.21 -20.69 16 18 H 0.10 4.16 7.91 -2.91 -0.02 4.14 16 19 C 0.04 1.52 5.13 85.33 0.44 1.96 16 20 N -0.79 -35.84 10.96 21.86 0.24 -35.60 16 21 Si 0.99 32.42 29.60 68.60 2.03 34.45 16 22 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 23 H -0.26 -8.35 7.11 99.48 0.71 -7.65 16 24 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 25 C -0.19 -9.21 8.63 22.47 0.19 -9.01 16 26 C -0.05 -2.25 9.65 22.25 0.21 -2.03 16 27 N -0.53 -20.99 10.92 -302.00 -3.30 -24.29 16 28 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.08 2.19 5.16 -2.39 -0.01 2.18 16 30 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 31 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.14 3.63 7.87 -2.91 -0.02 3.61 16 34 H 0.12 4.66 7.85 -2.91 -0.02 4.64 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.30 12.07 8.29 -92.71 -0.77 11.30 16 37 H 0.12 5.59 6.16 -2.91 -0.02 5.57 16 38 H 0.11 4.59 7.92 -2.91 -0.02 4.57 16 Total: -1.00 -52.99 337.98 5.38 -47.62 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.12 Total: 25.93 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.24 Total: -33.10 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -3.56 Total: -75.38 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.76 Total: 2.35 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 32.42 SS G_CDS: 2.03 Total: 34.45 kcal Total: -52.99 5.38 -47.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546503521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.580 kcal (2) G-P(sol) polarization free energy of solvation -52.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds