Wall clock time and date at job start Tue Mar 31 2020 13:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00470 * 2 1 4 4 H 1.48503 * 109.47127 * 270.00070 * 3 2 1 5 5 H 1.48500 * 109.47198 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47319 * 150.00045 * 3 2 1 7 7 C 1.38819 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99880 * 169.81878 * 7 2 1 9 9 N 1.36939 * 119.99922 * 349.81270 * 7 2 1 10 10 C 1.46928 * 120.63436 * 328.36981 * 9 7 2 11 11 C 1.53190 * 108.77513 * 233.62950 * 10 9 7 12 12 C 1.53044 * 109.31211 * 305.36413 * 11 10 9 13 13 N 1.46498 * 109.45747 * 181.38643 * 12 11 10 14 14 C 1.34777 * 120.00122 * 154.97508 * 13 12 11 15 15 O 1.21585 * 119.99764 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00242 * 180.02562 * 14 13 12 17 17 C 1.39398 * 120.00064 * 184.99990 * 16 14 13 18 18 C 1.38983 * 119.69258 * 174.76399 * 17 16 14 19 19 C 1.38500 * 119.08786 * 179.72124 * 18 17 16 20 20 Cl 1.73599 * 120.76762 * 180.25859 * 19 18 17 21 21 C 1.38986 * 118.46761 * 0.28120 * 19 18 17 22 22 C 1.38009 * 119.29502 * 359.97438 * 21 19 18 23 23 N 1.31959 * 120.86338 * 0.02562 * 22 21 19 24 24 C 1.53037 * 109.52585 * 61.37151 * 12 11 10 25 25 C 1.46921 * 120.62659 * 148.38906 * 9 7 2 26 26 H 0.96999 * 119.99095 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.58416 * 113.84140 * 10 9 7 28 28 H 1.09005 * 109.70157 * 353.48655 * 10 9 7 29 29 H 1.08996 * 109.49415 * 185.41461 * 11 10 9 30 30 H 1.09004 * 109.52068 * 65.32940 * 11 10 9 31 31 H 1.08996 * 109.46210 * 301.35789 * 12 11 10 32 32 H 0.96998 * 120.00211 * 334.97200 * 13 12 11 33 33 H 0.97002 * 120.00199 * 4.99490 * 16 14 13 34 34 H 1.07996 * 120.45558 * 359.97438 * 18 17 16 35 35 H 1.07997 * 120.35751 * 179.97438 * 21 19 18 36 36 H 1.08002 * 119.56893 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.49811 * 58.57941 * 24 12 11 38 38 H 1.09001 * 109.49605 * 178.67520 * 24 12 11 39 39 H 1.09005 * 109.58978 * 246.15971 * 25 9 7 40 40 H 1.09000 * 109.58843 * 6.44112 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0774 -1.2098 -0.1648 9 7 1.3416 -2.3787 0.2108 10 6 0.1528 -2.4203 1.0733 11 6 0.3564 -3.4990 2.1418 12 6 0.6862 -4.8296 1.4614 13 7 0.8490 -5.8708 2.4790 14 6 0.6425 -7.1637 2.1592 15 8 0.3206 -7.4658 1.0264 16 7 0.7917 -8.1216 3.0955 17 6 0.6806 -9.4654 2.7417 18 6 0.9430 -10.4500 3.6868 19 6 0.8231 -11.7811 3.3234 20 17 1.1338 -13.0464 4.4707 21 6 0.4488 -12.0806 2.0188 22 6 0.2091 -11.0508 1.1318 23 7 0.3315 -9.7917 1.5072 24 6 1.9848 -4.6883 0.6641 25 6 1.7996 -3.6233 -0.4214 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7252 -2.6609 0.4738 28 1 0.0131 -1.4518 1.5536 29 1 -0.5559 -3.6066 2.7284 30 1 1.1787 -3.2118 2.7972 31 1 -0.1254 -5.1040 0.7877 32 1 1.1056 -5.6298 3.3828 33 1 0.9766 -7.8760 4.0155 34 1 1.2324 -10.1809 4.6918 35 1 0.3465 -13.1081 1.7025 36 1 -0.0816 -11.2785 0.1168 37 1 2.7918 -4.3895 1.3331 38 1 2.2318 -5.6426 0.1989 39 1 1.0559 -3.9620 -1.1428 40 1 2.7478 -3.4476 -0.9295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585807358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:13 Heat of formation + Delta-G solvation = 38.084442 kcal Electronic energy + Delta-G solvation = -24428.861642 eV Core-core repulsion = 20691.735672 eV Total energy + Delta-G solvation = -3737.125969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06752 -39.58823 -37.55778 -37.06967 -35.04213 -34.38620 -32.41799 -32.15194 -30.57706 -29.95004 -29.11791 -25.20614 -24.19133 -23.67359 -22.25356 -21.90052 -20.68309 -19.49706 -18.72872 -18.11999 -16.77550 -16.63149 -16.17553 -15.63327 -15.51129 -14.86944 -14.65617 -14.31613 -14.23269 -13.99027 -13.68747 -13.52612 -13.00340 -12.81489 -12.73284 -12.49109 -12.34650 -11.51418 -11.46514 -11.05993 -11.02875 -10.84446 -10.73689 -10.50724 -10.34509 -10.24805 -10.02683 -9.83300 -9.80677 -9.57912 -9.30835 -8.81699 -8.54271 -8.44867 -6.62273 -5.79327 -3.26920 0.71628 0.78661 1.48385 2.38355 3.12000 3.36685 3.43341 3.44925 3.63705 3.87086 4.30611 4.48358 4.53388 4.55054 4.75275 5.14897 5.23838 5.34909 5.41340 5.50237 5.57992 5.60606 5.84112 5.90074 6.07929 6.26922 6.28903 6.34183 6.48115 6.57738 6.60080 6.70518 6.82449 6.94368 7.03080 7.33715 7.60473 7.67452 7.78749 8.03896 8.47595 8.62587 9.22053 9.83221 10.41892 11.29283 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.043766 B = 0.002093 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.606967 B =13374.712042 C =13550.840439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.169 3.831 13 N -0.734 5.734 14 C 0.690 3.310 15 O -0.524 6.524 16 N -0.671 5.671 17 C 0.402 3.598 18 C -0.211 4.211 19 C 0.037 3.963 20 Cl -0.054 7.054 21 C -0.207 4.207 22 C 0.153 3.847 23 N -0.468 5.468 24 C -0.139 4.139 25 C 0.148 3.852 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.391 0.609 33 H 0.413 0.587 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.169 0.831 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -23.407 10.901 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.049 3.951 11 C -0.187 4.187 12 C 0.065 3.935 13 N -0.389 5.389 14 C 0.389 3.611 15 O -0.395 6.395 16 N -0.319 5.319 17 C 0.169 3.831 18 C -0.236 4.236 19 C 0.002 3.998 20 Cl -0.025 7.025 21 C -0.230 4.230 22 C -0.006 4.006 23 N -0.182 5.182 24 C -0.180 4.180 25 C 0.021 3.979 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.224 0.776 33 H 0.249 0.751 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.186 0.814 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.557 -22.794 9.299 24.624 hybrid contribution 0.862 0.261 1.752 1.970 sum 1.420 -22.532 11.050 25.136 Atomic orbital electron populations 1.69965 1.05243 1.25492 1.54293 1.25193 0.95442 0.98428 1.00500 0.86258 0.79009 0.83497 0.77742 1.21336 1.21603 1.20504 1.19169 0.90778 0.83845 1.44344 0.91823 1.44056 1.31585 1.03806 1.52141 1.20760 0.88462 0.96511 0.89402 1.22575 1.00315 0.95244 1.00533 1.20983 0.98552 0.85273 0.88644 1.45639 1.73863 1.04485 1.14873 1.16094 0.79417 0.80901 0.84678 1.91060 1.49816 1.80335 1.18242 1.42866 1.73530 1.02865 1.12686 1.18045 0.91813 0.83898 0.89343 1.21239 1.09900 0.90819 1.01602 1.20898 0.98492 0.89192 0.91185 1.98398 1.93838 1.50771 1.59492 1.22003 1.06232 1.02223 0.92526 1.22792 0.92137 0.85952 0.99742 1.67801 1.14305 1.20708 1.15398 1.22396 0.96823 0.99494 0.99277 1.20887 0.98008 0.86589 0.92463 0.93565 0.96063 0.88854 0.92755 0.92223 0.89856 0.77565 0.75079 0.83736 0.83762 0.81396 0.92461 0.92670 0.96098 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.95 11.04 55.49 0.61 -25.34 16 2 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 3 Si 0.91 21.45 29.57 -169.99 -5.03 16.43 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 8 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -14.75 2.98 -172.32 -0.51 -15.27 16 10 C 0.18 4.07 5.25 -3.71 -0.02 4.05 16 11 C -0.15 -2.62 5.55 -26.61 -0.15 -2.77 16 12 C 0.17 2.90 2.42 -67.89 -0.16 2.74 16 13 N -0.73 -9.97 5.08 -58.64 -0.30 -10.26 16 14 C 0.69 10.24 8.49 -86.92 -0.74 9.51 16 15 O -0.52 -10.11 14.27 5.29 0.08 -10.04 16 16 N -0.67 -7.29 5.39 -15.82 -0.09 -7.38 16 17 C 0.40 4.69 7.42 -154.71 -1.15 3.55 16 18 C -0.21 -1.85 9.76 -39.21 -0.38 -2.23 16 19 C 0.04 0.32 6.37 -39.21 -0.25 0.07 16 20 Cl -0.05 -0.40 29.02 -51.86 -1.50 -1.90 16 21 C -0.21 -1.68 9.93 -39.39 -0.39 -2.07 16 22 C 0.15 1.53 11.17 -17.58 -0.20 1.33 16 23 N -0.47 -6.42 7.88 -12.39 -0.10 -6.52 16 24 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 25 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 2.41 6.11 -51.93 -0.32 2.10 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.64 7.57 -51.93 -0.39 1.24 16 32 H 0.39 4.01 8.62 -40.82 -0.35 3.66 16 33 H 0.41 2.74 8.72 -40.82 -0.36 2.38 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -33.51 347.86 -10.62 -44.13 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.18 Total: 3.26 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.84 Total: 7.64 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.38 Total: -64.76 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.51 -10.62 -44.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585807358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.216 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds