Wall clock time and date at job start Tue Mar 31 2020 13:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00470 * 2 1 4 4 H 1.48503 * 109.47127 * 270.00070 * 3 2 1 5 5 H 1.48500 * 109.47198 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47319 * 150.00045 * 3 2 1 7 7 C 1.38819 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99880 * 169.81878 * 7 2 1 9 9 N 1.36939 * 119.99922 * 349.81270 * 7 2 1 10 10 C 1.46928 * 120.63436 * 328.36981 * 9 7 2 11 11 C 1.53190 * 108.77513 * 233.62950 * 10 9 7 12 12 C 1.53044 * 109.31211 * 305.36413 * 11 10 9 13 13 N 1.46498 * 109.45747 * 181.38643 * 12 11 10 14 14 C 1.34777 * 120.00122 * 154.97508 * 13 12 11 15 15 O 1.21585 * 119.99764 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00242 * 180.02562 * 14 13 12 17 17 C 1.39398 * 120.00064 * 184.99990 * 16 14 13 18 18 C 1.38983 * 119.69258 * 174.76399 * 17 16 14 19 19 C 1.38500 * 119.08786 * 179.72124 * 18 17 16 20 20 Cl 1.73599 * 120.76762 * 180.25859 * 19 18 17 21 21 C 1.38986 * 118.46761 * 0.28120 * 19 18 17 22 22 C 1.38009 * 119.29502 * 359.97438 * 21 19 18 23 23 N 1.31959 * 120.86338 * 0.02562 * 22 21 19 24 24 C 1.53037 * 109.52585 * 61.37151 * 12 11 10 25 25 C 1.46921 * 120.62659 * 148.38906 * 9 7 2 26 26 H 0.96999 * 119.99095 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.58416 * 113.84140 * 10 9 7 28 28 H 1.09005 * 109.70157 * 353.48655 * 10 9 7 29 29 H 1.08996 * 109.49415 * 185.41461 * 11 10 9 30 30 H 1.09004 * 109.52068 * 65.32940 * 11 10 9 31 31 H 1.08996 * 109.46210 * 301.35789 * 12 11 10 32 32 H 0.96998 * 120.00211 * 334.97200 * 13 12 11 33 33 H 0.97002 * 120.00199 * 4.99490 * 16 14 13 34 34 H 1.07996 * 120.45558 * 359.97438 * 18 17 16 35 35 H 1.07997 * 120.35751 * 179.97438 * 21 19 18 36 36 H 1.08002 * 119.56893 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.49811 * 58.57941 * 24 12 11 38 38 H 1.09001 * 109.49605 * 178.67520 * 24 12 11 39 39 H 1.09005 * 109.58978 * 246.15971 * 25 9 7 40 40 H 1.09000 * 109.58843 * 6.44112 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0774 -1.2098 -0.1648 9 7 1.3416 -2.3787 0.2108 10 6 0.1528 -2.4203 1.0733 11 6 0.3564 -3.4990 2.1418 12 6 0.6862 -4.8296 1.4614 13 7 0.8490 -5.8708 2.4790 14 6 0.6425 -7.1637 2.1592 15 8 0.3206 -7.4658 1.0264 16 7 0.7917 -8.1216 3.0955 17 6 0.6806 -9.4654 2.7417 18 6 0.9430 -10.4500 3.6868 19 6 0.8231 -11.7811 3.3234 20 17 1.1338 -13.0464 4.4707 21 6 0.4488 -12.0806 2.0188 22 6 0.2091 -11.0508 1.1318 23 7 0.3315 -9.7917 1.5072 24 6 1.9848 -4.6883 0.6641 25 6 1.7996 -3.6233 -0.4214 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7252 -2.6609 0.4738 28 1 0.0131 -1.4518 1.5536 29 1 -0.5559 -3.6066 2.7284 30 1 1.1787 -3.2118 2.7972 31 1 -0.1254 -5.1040 0.7877 32 1 1.1056 -5.6298 3.3828 33 1 0.9766 -7.8760 4.0155 34 1 1.2324 -10.1809 4.6918 35 1 0.3465 -13.1081 1.7025 36 1 -0.0816 -11.2785 0.1168 37 1 2.7918 -4.3895 1.3331 38 1 2.2318 -5.6426 0.1989 39 1 1.0559 -3.9620 -1.1428 40 1 2.7478 -3.4476 -0.9295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585807358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:12 Heat of formation + Delta-G solvation = 16.316548 kcal Electronic energy + Delta-G solvation = -24429.805568 eV Core-core repulsion = 20691.735672 eV Total energy + Delta-G solvation = -3738.069896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97024 -40.63878 -39.05710 -37.75495 -36.18557 -35.81122 -33.91766 -33.12534 -31.93345 -31.44703 -30.52068 -26.98052 -25.08524 -24.63843 -23.88989 -23.39598 -21.83352 -21.07008 -19.74025 -19.23401 -18.53548 -17.40108 -17.02994 -16.90552 -16.66255 -16.49593 -15.70604 -15.54922 -15.33786 -15.26002 -15.11251 -14.75417 -14.66791 -14.30469 -14.05554 -13.35999 -13.34165 -13.19614 -12.93395 -12.64574 -12.51514 -12.22643 -12.12181 -12.01907 -11.89770 -11.80565 -11.56914 -11.48628 -11.28751 -10.56211 -10.51616 -10.22838 -10.05414 -9.35237 -8.63885 -7.86333 -5.37681 0.00898 0.06464 0.81596 1.43744 1.49439 1.49871 1.59589 2.07783 2.52019 2.80878 2.93682 3.31095 3.56189 3.68430 3.85398 3.89459 3.91793 4.05694 4.09223 4.35062 4.47987 4.50608 4.60143 4.66583 4.81909 4.87112 4.94216 5.01141 5.07552 5.11864 5.17460 5.30961 5.49403 5.54590 5.61410 5.65631 5.72644 5.82880 6.42615 6.74192 7.16759 7.18463 7.55933 7.84381 8.38702 9.20262 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.043766 B = 0.002093 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.606967 B =13374.712042 C =13550.840439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.183 3.817 13 N -0.719 5.719 14 C 0.691 3.309 15 O -0.574 6.574 16 N -0.656 5.656 17 C 0.375 3.625 18 C -0.195 4.195 19 C 0.028 3.972 20 Cl -0.040 7.040 21 C -0.192 4.192 22 C 0.136 3.864 23 N -0.517 5.517 24 C -0.123 4.123 25 C 0.145 3.855 26 H 0.251 0.749 27 H -0.007 1.007 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.412 0.588 33 H 0.433 0.567 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.006 0.994 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -25.062 13.100 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.167 4.167 12 C 0.078 3.922 13 N -0.375 5.375 14 C 0.391 3.609 15 O -0.447 6.447 16 N -0.306 5.306 17 C 0.143 3.857 18 C -0.219 4.219 19 C -0.007 4.007 20 Cl -0.011 7.011 21 C -0.214 4.214 22 C -0.022 4.022 23 N -0.232 5.232 24 C -0.163 4.163 25 C 0.019 3.981 26 H 0.060 0.940 27 H 0.011 0.989 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.249 0.751 33 H 0.273 0.727 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.200 0.800 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.817 -24.505 11.572 27.161 hybrid contribution 0.465 0.610 1.046 1.297 sum 2.282 -23.895 12.618 27.118 Atomic orbital electron populations 1.70139 1.06662 1.25904 1.55542 1.25959 0.96225 1.01610 1.00702 0.85218 0.78078 0.79296 0.77469 1.21412 1.21762 1.19263 1.19496 0.91152 0.84907 1.43752 0.91615 1.44308 1.31735 1.04228 1.53041 1.20576 0.87161 0.96962 0.90024 1.22272 1.01997 0.93571 0.98866 1.20517 0.96993 0.85822 0.88913 1.45164 1.73750 1.03562 1.15063 1.16193 0.78801 0.81375 0.84573 1.91034 1.51920 1.81175 1.20606 1.42514 1.73019 1.02146 1.12947 1.18263 0.93439 0.84335 0.89675 1.21425 1.08139 0.90268 1.02112 1.21057 0.98385 0.89589 0.91658 1.98408 1.93710 1.50019 1.58927 1.22261 1.04061 1.02993 0.92058 1.23090 0.92679 0.85452 1.00943 1.67672 1.15701 1.22747 1.17068 1.22173 0.97678 0.98057 0.98403 1.20962 0.97384 0.86433 0.93349 0.93999 0.98864 0.91629 0.90416 0.90919 0.92557 0.75144 0.72653 0.80953 0.81152 0.80021 0.91460 0.92582 0.97610 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.07 11.04 21.65 0.24 -54.83 16 2 C -0.05 -2.75 5.06 84.86 0.43 -2.33 16 3 Si 0.97 44.41 29.57 68.60 2.03 46.44 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 8 H 0.07 3.51 7.85 -2.92 -0.02 3.48 16 9 N -0.61 -30.84 2.98 -699.10 -2.09 -32.93 16 10 C 0.18 8.52 5.25 86.36 0.45 8.98 16 11 C -0.13 -4.43 5.55 30.67 0.17 -4.26 16 12 C 0.18 6.17 2.42 45.02 0.11 6.28 16 13 N -0.72 -18.27 5.08 -457.70 -2.33 -20.60 16 14 C 0.69 19.87 8.49 179.06 1.52 21.39 16 15 O -0.57 -22.38 14.27 -3.98 -0.06 -22.44 16 16 N -0.66 -13.12 5.39 -322.23 -1.74 -14.86 16 17 C 0.38 8.25 7.42 132.90 0.99 9.24 16 18 C -0.20 -2.93 9.76 22.51 0.22 -2.71 16 19 C 0.03 0.41 6.37 22.51 0.14 0.55 16 20 Cl -0.04 -0.47 29.02 -2.72 -0.08 -0.55 16 21 C -0.19 -2.71 9.93 22.39 0.22 -2.49 16 22 C 0.14 2.62 11.17 84.62 0.95 3.57 16 23 N -0.52 -14.05 7.88 -193.10 -1.52 -15.57 16 24 C -0.12 -4.43 5.65 30.67 0.17 -4.25 16 25 C 0.14 6.36 6.52 86.36 0.56 6.93 16 26 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.07 3.49 6.11 -2.38 -0.01 3.47 16 29 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.06 2.25 7.57 -2.39 -0.02 2.24 16 32 H 0.41 7.20 8.62 -92.71 -0.80 6.40 16 33 H 0.43 4.54 8.72 -92.71 -0.81 3.73 16 34 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 36 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.01 0.27 8.14 -2.38 -0.02 0.26 16 40 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 Total: -1.00 -74.98 347.86 0.68 -74.30 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -0.52 Total: 13.74 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 6.74 Total: 27.30 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -7.43 Total: -138.79 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -74.98 0.68 -74.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585807358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.618 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds