Wall clock time and date at job start Tue Mar 31 2020 13:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00609 * 2 1 4 4 H 1.48498 * 109.47469 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46563 * 299.99952 * 3 2 1 6 6 H 1.48498 * 109.46982 * 59.99761 * 3 2 1 7 7 C 1.37884 * 119.99325 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99619 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00317 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99973 * 169.99943 * 10 9 7 12 12 C 1.53243 * 109.33878 * 187.25617 * 11 10 9 13 13 N 1.47080 * 108.51960 * 306.16638 * 12 11 10 14 14 C 1.34773 * 120.88169 * 231.18816 * 13 12 11 15 15 O 1.21584 * 119.99857 * 5.42928 * 14 13 12 16 16 N 1.34772 * 119.99906 * 185.15326 * 14 13 12 17 17 C 1.39406 * 120.00148 * 175.26322 * 16 14 13 18 18 C 1.38980 * 119.69029 * 185.03533 * 17 16 14 19 19 C 1.38505 * 119.08354 * 180.02562 * 18 17 16 20 20 Cl 1.73600 * 120.76551 * 179.97438 * 19 18 17 21 21 C 1.38990 * 118.46727 * 0.02562 * 19 18 17 22 22 C 1.38011 * 119.29545 * 359.97438 * 21 19 18 23 23 N 1.31961 * 120.86450 * 359.72902 * 22 21 19 24 24 C 1.47078 * 118.23295 * 51.46191 * 13 12 11 25 25 C 1.46899 * 111.00273 * 294.30222 * 10 9 7 26 26 H 0.97003 * 119.99617 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47156 * 59.99717 * 9 7 2 28 28 H 1.08997 * 109.47072 * 299.99887 * 9 7 2 29 29 H 1.09000 * 109.49284 * 67.29650 * 11 10 9 30 30 H 1.09003 * 109.49221 * 307.21592 * 11 10 9 31 31 H 1.09000 * 109.62579 * 186.45923 * 12 11 10 32 32 H 1.08996 * 109.62766 * 65.88224 * 12 11 10 33 33 H 0.96994 * 120.00514 * 355.26995 * 16 14 13 34 34 H 1.08001 * 120.46124 * 359.97438 * 18 17 16 35 35 H 1.08000 * 120.35223 * 179.97438 * 21 19 18 36 36 H 1.08002 * 119.56616 * 180.02562 * 22 21 19 37 37 H 1.09003 * 109.62749 * 68.25422 * 24 13 12 38 38 H 1.09005 * 109.62333 * 188.82663 * 24 13 12 39 39 H 1.08995 * 109.49216 * 292.70853 * 25 10 9 40 40 H 1.09000 * 109.49251 * 52.75895 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2053 -3.6158 0.0005 11 6 1.5208 -4.8935 0.2387 12 6 2.5634 -6.0033 0.4116 13 7 3.4612 -5.9864 -0.7533 14 6 3.7114 -7.1125 -1.4502 15 8 3.1176 -8.1387 -1.1808 16 7 4.6158 -7.0997 -2.4493 17 6 4.9472 -8.2847 -3.1047 18 6 5.9553 -8.2834 -4.0614 19 6 6.2740 -9.4676 -4.7052 20 17 7.5251 -9.5157 -5.9078 21 6 5.5683 -10.6162 -4.3671 22 6 4.5793 -10.5432 -3.4072 23 7 4.3020 -9.4014 -2.8065 24 6 4.0834 -4.7092 -1.1338 25 6 2.9765 -3.6493 -1.2493 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 0.8792 -5.1264 -0.6112 30 1 0.9156 -4.8191 1.1422 31 1 2.0627 -6.9695 0.4740 32 1 3.1390 -5.8266 1.3201 33 1 5.0361 -6.2662 -2.7124 34 1 6.4824 -7.3715 -4.3002 35 1 5.7914 -11.5559 -4.8504 36 1 4.0285 -11.4331 -3.1408 37 1 4.8024 -4.4106 -0.3709 38 1 4.5883 -4.8195 -2.0935 39 1 2.3146 -3.8994 -2.0784 40 1 3.4266 -2.6723 -1.4253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601257150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:10 Heat of formation + Delta-G solvation = 38.971903 kcal Electronic energy + Delta-G solvation = -24517.673238 eV Core-core repulsion = 20780.585752 eV Total energy + Delta-G solvation = -3737.087486 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16621 -39.80395 -37.73623 -37.07315 -35.12681 -34.44916 -32.50128 -32.37335 -31.02274 -30.16858 -28.17863 -25.66741 -24.19409 -23.82426 -23.25271 -22.03626 -20.85896 -19.55751 -18.77722 -17.67577 -16.70539 -16.42307 -16.24538 -15.84464 -15.46462 -14.97450 -14.62943 -14.53982 -14.46643 -14.10448 -13.98577 -13.78101 -13.63290 -13.12436 -12.75272 -12.53438 -12.33667 -11.96510 -11.50006 -11.34607 -11.13976 -11.05488 -10.96161 -10.81875 -10.70412 -10.56578 -10.31492 -9.92805 -9.82461 -9.35463 -9.31050 -8.74813 -8.52686 -8.38644 -7.38066 -6.10346 -4.12606 0.71353 0.77775 1.49294 2.32903 3.04587 3.25502 3.33455 3.36796 3.52050 3.60933 4.20605 4.34763 4.52337 4.53482 4.65580 4.73930 5.12998 5.14535 5.22312 5.25446 5.31340 5.37687 5.57825 5.58220 5.66986 5.76902 5.87067 5.99365 6.23692 6.28531 6.39082 6.40029 6.52518 6.75248 7.17387 7.23765 7.52166 7.69682 7.90289 7.96645 8.07133 8.42366 8.51612 8.94762 9.52147 11.00472 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.002407 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.907389 B =11631.402067 C =12672.063508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.136 3.864 13 N -0.621 5.621 14 C 0.698 3.302 15 O -0.532 6.532 16 N -0.669 5.669 17 C 0.402 3.598 18 C -0.209 4.209 19 C 0.038 3.962 20 Cl -0.053 7.053 21 C -0.207 4.207 22 C 0.151 3.849 23 N -0.469 5.469 24 C 0.112 3.888 25 C 0.051 3.949 26 H 0.261 0.739 27 H -0.009 1.009 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.168 0.832 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.425 -18.622 -9.169 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.090 4.090 12 C 0.014 3.986 13 N -0.359 5.359 14 C 0.399 3.601 15 O -0.404 6.404 16 N -0.319 5.319 17 C 0.169 3.831 18 C -0.234 4.234 19 C 0.003 3.997 20 Cl -0.024 7.024 21 C -0.230 4.230 22 C -0.007 4.007 23 N -0.184 5.184 24 C -0.011 4.011 25 C -0.078 4.078 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.254 0.746 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.185 0.815 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.551 -19.045 -7.935 24.150 hybrid contribution 0.804 1.432 -1.634 2.317 sum 13.356 -17.613 -9.570 24.087 Atomic orbital electron populations 1.69967 1.06104 1.26792 1.50730 1.25006 0.94868 0.99397 0.95354 0.86440 0.80009 0.83388 0.77560 1.19638 1.21131 1.20972 1.21164 0.93466 0.89842 1.50378 0.91755 1.19736 0.89994 0.87131 0.96307 1.62074 1.28160 1.02826 1.32946 1.22441 0.95011 0.90443 1.01088 1.21699 0.91071 0.99713 0.86150 1.47501 1.49617 1.06940 1.31827 1.15866 0.80342 0.84424 0.79494 1.91020 1.50494 1.30513 1.68370 1.42987 1.44355 1.08721 1.35856 1.18051 0.89598 0.86507 0.88975 1.21255 1.01767 0.99277 1.01088 1.20901 0.91935 0.94562 0.92312 1.98401 1.50956 1.98715 1.54291 1.21997 0.99769 0.98577 1.02618 1.22766 0.92787 0.95365 0.89824 1.67788 1.26457 0.97682 1.26464 1.22028 0.96478 0.83227 0.99402 1.22392 0.95004 0.98816 0.91631 0.92885 0.99091 0.94920 0.95410 0.89864 0.89084 0.90881 0.74584 0.83630 0.83758 0.81452 0.90196 0.91512 0.95614 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.57 8.41 -34.44 -0.29 -13.86 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 9 C 0.19 4.80 4.72 -4.98 -0.02 4.78 16 10 N -0.53 -10.72 4.62 -235.48 -1.09 -11.81 16 11 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 12 C 0.14 2.07 6.61 -3.60 -0.02 2.04 16 13 N -0.62 -9.08 3.00 -177.91 -0.53 -9.61 16 14 C 0.70 10.68 8.27 -86.93 -0.72 9.96 16 15 O -0.53 -9.90 14.06 5.29 0.07 -9.83 16 16 N -0.67 -8.00 5.30 -15.82 -0.08 -8.09 16 17 C 0.40 4.85 7.42 -154.70 -1.15 3.70 16 18 C -0.21 -1.93 9.76 -39.21 -0.38 -2.32 16 19 C 0.04 0.33 6.37 -39.20 -0.25 0.08 16 20 Cl -0.05 -0.40 29.02 -51.86 -1.50 -1.91 16 21 C -0.21 -1.67 9.93 -39.39 -0.39 -2.06 16 22 C 0.15 1.48 11.17 -17.58 -0.20 1.29 16 23 N -0.47 -6.38 7.88 -12.38 -0.10 -6.48 16 24 C 0.11 1.47 6.57 -3.37 -0.02 1.44 16 25 C 0.05 0.88 5.47 -3.47 -0.02 0.86 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 28 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 31 H 0.09 1.39 7.04 -51.93 -0.37 1.02 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.41 3.64 6.23 -40.82 -0.25 3.39 16 34 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.64 5.73 -51.93 -0.30 0.35 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -32.98 345.74 -10.87 -43.85 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.98 Total: 0.10 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -3.58 Total: 8.00 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -1.07 Total: -61.20 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.98 -10.87 -43.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.821 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds