Wall clock time and date at job start Tue Mar 31 2020 13:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00609 * 2 1 4 4 H 1.48498 * 109.47469 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46563 * 299.99952 * 3 2 1 6 6 H 1.48498 * 109.46982 * 59.99761 * 3 2 1 7 7 C 1.37884 * 119.99325 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99619 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00317 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99973 * 169.99943 * 10 9 7 12 12 C 1.53243 * 109.33878 * 187.25617 * 11 10 9 13 13 N 1.47080 * 108.51960 * 306.16638 * 12 11 10 14 14 C 1.34773 * 120.88169 * 231.18816 * 13 12 11 15 15 O 1.21584 * 119.99857 * 5.42928 * 14 13 12 16 16 N 1.34772 * 119.99906 * 185.15326 * 14 13 12 17 17 C 1.39406 * 120.00148 * 175.26322 * 16 14 13 18 18 C 1.38980 * 119.69029 * 185.03533 * 17 16 14 19 19 C 1.38505 * 119.08354 * 180.02562 * 18 17 16 20 20 Cl 1.73600 * 120.76551 * 179.97438 * 19 18 17 21 21 C 1.38990 * 118.46727 * 0.02562 * 19 18 17 22 22 C 1.38011 * 119.29545 * 359.97438 * 21 19 18 23 23 N 1.31961 * 120.86450 * 359.72902 * 22 21 19 24 24 C 1.47078 * 118.23295 * 51.46191 * 13 12 11 25 25 C 1.46899 * 111.00273 * 294.30222 * 10 9 7 26 26 H 0.97003 * 119.99617 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47156 * 59.99717 * 9 7 2 28 28 H 1.08997 * 109.47072 * 299.99887 * 9 7 2 29 29 H 1.09000 * 109.49284 * 67.29650 * 11 10 9 30 30 H 1.09003 * 109.49221 * 307.21592 * 11 10 9 31 31 H 1.09000 * 109.62579 * 186.45923 * 12 11 10 32 32 H 1.08996 * 109.62766 * 65.88224 * 12 11 10 33 33 H 0.96994 * 120.00514 * 355.26995 * 16 14 13 34 34 H 1.08001 * 120.46124 * 359.97438 * 18 17 16 35 35 H 1.08000 * 120.35223 * 179.97438 * 21 19 18 36 36 H 1.08002 * 119.56616 * 180.02562 * 22 21 19 37 37 H 1.09003 * 109.62749 * 68.25422 * 24 13 12 38 38 H 1.09005 * 109.62333 * 188.82663 * 24 13 12 39 39 H 1.08995 * 109.49216 * 292.70853 * 25 10 9 40 40 H 1.09000 * 109.49251 * 52.75895 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2053 -3.6158 0.0005 11 6 1.5208 -4.8935 0.2387 12 6 2.5634 -6.0033 0.4116 13 7 3.4612 -5.9864 -0.7533 14 6 3.7114 -7.1125 -1.4502 15 8 3.1176 -8.1387 -1.1808 16 7 4.6158 -7.0997 -2.4493 17 6 4.9472 -8.2847 -3.1047 18 6 5.9553 -8.2834 -4.0614 19 6 6.2740 -9.4676 -4.7052 20 17 7.5251 -9.5157 -5.9078 21 6 5.5683 -10.6162 -4.3671 22 6 4.5793 -10.5432 -3.4072 23 7 4.3020 -9.4014 -2.8065 24 6 4.0834 -4.7092 -1.1338 25 6 2.9765 -3.6493 -1.2493 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 0.8792 -5.1264 -0.6112 30 1 0.9156 -4.8191 1.1422 31 1 2.0627 -6.9695 0.4740 32 1 3.1390 -5.8266 1.3201 33 1 5.0361 -6.2662 -2.7124 34 1 6.4824 -7.3715 -4.3002 35 1 5.7914 -11.5559 -4.8504 36 1 4.0285 -11.4331 -3.1408 37 1 4.8024 -4.4106 -0.3709 38 1 4.5883 -4.8195 -2.0935 39 1 2.3146 -3.8994 -2.0784 40 1 3.4266 -2.6723 -1.4253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601257150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:09 Heat of formation + Delta-G solvation = 17.334750 kcal Electronic energy + Delta-G solvation = -24518.611495 eV Core-core repulsion = 20780.585752 eV Total energy + Delta-G solvation = -3738.025743 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.11601 -40.80418 -39.07652 -37.75635 -36.14592 -35.95844 -34.38413 -33.14022 -32.25360 -31.12984 -29.83514 -27.29687 -25.07800 -24.86421 -24.49413 -23.59675 -22.19743 -20.69719 -19.78080 -18.71556 -18.47158 -17.50004 -17.03109 -16.95120 -16.68571 -16.47856 -16.00526 -15.75316 -15.45989 -15.34436 -15.23849 -15.07298 -14.69128 -14.40778 -14.06441 -13.57621 -13.37265 -13.29002 -13.05050 -12.76526 -12.61482 -12.43924 -12.32900 -12.14052 -12.10155 -11.87709 -11.77672 -11.42351 -11.26028 -10.62186 -10.52548 -10.25746 -9.86444 -9.36640 -9.05361 -8.19674 -6.29974 -0.00612 0.04756 0.80754 1.35616 1.43761 1.45030 1.57894 1.97902 2.41477 2.53948 2.78638 3.12928 3.21742 3.46457 3.79989 3.87903 3.91057 4.00265 4.06271 4.14572 4.23175 4.42636 4.47640 4.51661 4.59546 4.73666 4.83409 4.93732 4.93796 5.00964 5.08396 5.17334 5.22273 5.35806 5.59014 5.64443 5.71217 6.03008 6.25856 6.53253 6.56954 6.86515 7.03868 7.40213 7.43387 8.91965 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.002407 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.907389 B =11631.402067 C =12672.063508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.207 3.793 10 N -0.537 5.537 11 C 0.043 3.957 12 C 0.147 3.853 13 N -0.623 5.623 14 C 0.698 3.302 15 O -0.571 6.571 16 N -0.659 5.659 17 C 0.374 3.626 18 C -0.197 4.197 19 C 0.029 3.971 20 Cl -0.040 7.040 21 C -0.190 4.190 22 C 0.138 3.862 23 N -0.514 5.514 24 C 0.123 3.877 25 C 0.050 3.950 26 H 0.263 0.737 27 H -0.042 1.042 28 H 0.005 0.995 29 H 0.012 0.988 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.428 0.572 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.407 -19.012 -10.305 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.090 0.910 9 C 0.081 3.919 10 N -0.261 5.261 11 C -0.087 4.087 12 C 0.024 3.976 13 N -0.361 5.361 14 C 0.399 3.601 15 O -0.445 6.445 16 N -0.311 5.311 17 C 0.142 3.858 18 C -0.222 4.222 19 C -0.006 4.006 20 Cl -0.011 7.011 21 C -0.212 4.212 22 C -0.020 4.020 23 N -0.230 5.230 24 C 0.000 4.000 25 C -0.079 4.079 26 H 0.072 0.928 27 H -0.025 1.025 28 H 0.023 0.977 29 H 0.030 0.970 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.271 0.729 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.204 0.796 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.031 0.969 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.588 -19.454 -9.108 26.541 hybrid contribution -0.112 1.426 -1.368 1.980 sum 15.476 -18.028 -10.476 25.967 Atomic orbital electron populations 1.70109 1.07945 1.27825 1.51932 1.25961 0.95685 1.03395 0.94879 0.85302 0.79280 0.78421 0.77413 1.17990 1.20776 1.20860 1.21490 0.93902 0.90548 1.49727 0.90977 1.19386 0.90121 0.88995 0.93382 1.62011 1.26983 1.02500 1.34633 1.22464 0.95679 0.90066 1.00442 1.21530 0.90718 0.98300 0.87083 1.47508 1.49563 1.07436 1.31580 1.15977 0.80465 0.83835 0.79803 1.90991 1.52079 1.31842 1.69606 1.42739 1.43681 1.09646 1.35014 1.18251 0.90948 0.86223 0.90343 1.21422 1.00572 1.00492 0.99669 1.21062 0.92321 0.94667 0.92572 1.98410 1.50309 1.98684 1.53655 1.22283 0.98177 0.99555 1.01217 1.23132 0.93618 0.95053 0.90187 1.67669 1.28035 0.99111 1.28156 1.22046 0.94803 0.81007 1.02139 1.22452 0.95568 1.00117 0.89812 0.92795 1.02479 0.97693 0.96951 0.89847 0.89191 0.89570 0.72944 0.81251 0.80998 0.79622 0.88833 0.87488 0.96938 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.60 13.29 21.45 0.28 -55.31 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 3 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.52 -27.90 8.41 25.60 0.22 -27.69 16 8 H 0.07 3.70 7.13 -2.91 -0.02 3.67 16 9 C 0.21 10.73 4.72 85.56 0.40 11.13 16 10 N -0.54 -21.84 4.62 -898.92 -4.15 -25.99 16 11 C 0.04 1.53 5.62 86.39 0.49 2.01 16 12 C 0.15 4.39 6.61 86.35 0.57 4.97 16 13 N -0.62 -17.51 3.00 -835.06 -2.51 -20.02 16 14 C 0.70 20.78 8.27 179.06 1.48 22.26 16 15 O -0.57 -21.32 14.06 -3.98 -0.06 -21.37 16 16 N -0.66 -14.69 5.30 -322.23 -1.71 -16.40 16 17 C 0.37 8.52 7.42 132.89 0.99 9.51 16 18 C -0.20 -3.18 9.76 22.51 0.22 -2.96 16 19 C 0.03 0.43 6.37 22.51 0.14 0.57 16 20 Cl -0.04 -0.50 29.02 -2.72 -0.08 -0.58 16 21 C -0.19 -2.61 9.93 22.40 0.22 -2.39 16 22 C 0.14 2.52 11.17 84.62 0.95 3.47 16 23 N -0.51 -13.68 7.88 -193.09 -1.52 -15.20 16 24 C 0.12 2.95 6.57 86.50 0.57 3.52 16 25 C 0.05 1.69 5.47 86.54 0.47 2.17 16 26 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 27 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 28 H 0.00 0.28 7.97 -2.39 -0.02 0.26 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 2.93 7.99 -2.39 -0.02 2.91 16 31 H 0.09 2.76 7.04 -2.39 -0.02 2.74 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.43 6.37 6.23 -92.71 -0.58 5.80 16 34 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.11 1.71 5.73 -2.38 -0.01 1.70 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 3.22 6.67 -2.39 -0.02 3.21 16 Total: -1.00 -73.59 345.74 -0.04 -73.63 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.50 Total: 9.71 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 7.18 Total: 26.95 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -9.61 Total: -132.92 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -73.59 -0.04 -73.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.961 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds