Wall clock time and date at job start Tue Mar 31 2020 14:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27926 * 126.60340 * 2 1 4 4 N 1.39146 * 113.21402 * 179.91134 * 3 2 1 5 5 C 1.40146 * 124.44238 * 180.12093 * 4 3 2 6 6 C 1.38870 * 120.01939 * 179.69659 * 5 4 3 7 7 C 1.38069 * 119.98121 * 179.74642 * 6 5 4 8 8 C 1.38728 * 120.01877 * 0.55226 * 7 6 5 9 9 O 1.35966 * 119.98426 * 179.72499 * 8 7 6 10 10 C 1.42904 * 117.00108 * 359.97438 * 9 8 7 11 11 F 1.39901 * 109.46841 * 300.00292 * 10 9 8 12 12 F 1.39898 * 109.46789 * 60.00082 * 10 9 8 13 13 C 1.38731 * 120.03471 * 359.70204 * 8 7 6 14 14 C 1.38077 * 120.01245 * 0.02562 * 13 8 7 15 15 C 1.34959 * 111.12293 * 0.09444 * 4 3 2 16 16 O 1.21297 * 127.50306 * 179.97438 * 15 4 3 17 17 C 1.51435 * 126.41782 * 180.02562 * 2 1 3 18 18 H 1.09004 * 110.60564 * 298.66953 * 17 2 1 19 19 C 1.52997 * 110.61192 * 61.48466 * 17 2 1 20 20 C 1.50694 * 109.47460 * 182.84954 * 19 17 2 21 21 H 1.08002 * 120.00179 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00472 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99350 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00608 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00340 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00090 * 24 22 20 27 27 H 1.48498 * 109.47210 * 149.99801 * 24 22 20 28 28 H 1.08995 * 109.47506 * 269.93274 * 1 2 3 29 29 H 1.08996 * 109.47503 * 29.93811 * 1 2 3 30 30 H 1.09006 * 109.46947 * 149.93465 * 1 2 3 31 31 H 1.08000 * 120.00770 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.99077 * 180.27748 * 7 6 5 33 33 H 1.08999 * 109.46878 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.99699 * 179.97438 * 13 8 7 35 35 H 1.08002 * 120.00861 * 179.97438 * 14 13 8 36 36 H 1.09005 * 109.46800 * 62.85425 * 19 17 2 37 37 H 1.08998 * 109.47382 * 302.85224 * 19 17 2 38 38 H 0.97005 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2698 1.0270 0.0000 4 7 3.6234 0.7048 0.0020 5 6 4.6621 1.6456 0.0048 6 6 5.9843 1.2208 0.0130 7 6 7.0070 2.1483 0.0105 8 6 6.7142 3.5043 0.0115 9 8 7.7219 4.4171 0.0147 10 6 9.0575 3.9090 0.0175 11 9 9.2560 3.1258 1.1597 12 9 9.2616 3.1277 -1.1249 13 6 5.3936 3.9295 0.0086 14 6 4.3698 3.0031 0.0054 15 6 3.8050 -0.6326 0.0014 16 8 4.8579 -1.2348 0.0022 17 6 2.4060 -1.2186 -0.0005 18 1 2.2399 -1.8183 0.8944 19 6 2.1756 -2.0573 -1.2592 20 6 3.0304 -3.2970 -1.2003 21 1 3.6740 -3.4693 -0.3503 22 6 2.9917 -4.2109 -2.2320 23 7 2.2083 -4.0008 -3.2673 24 14 4.0518 -5.7472 -2.1594 25 1 5.3694 -5.4695 -2.7855 26 1 4.2510 -6.1444 -0.7424 27 1 3.3777 -6.8488 -2.8923 28 1 -0.3634 -0.0012 1.0276 29 1 -0.3634 0.8905 -0.5128 30 1 -0.3633 -0.8895 -0.5149 31 1 6.2124 0.1651 0.0168 32 1 8.0353 1.8181 0.0124 33 1 9.7625 4.7403 0.0195 34 1 5.1663 4.9853 0.0098 35 1 3.3417 3.3342 0.0036 36 1 2.4436 -1.4728 -2.1394 37 1 1.1254 -2.3427 -1.3185 38 1 2.1814 -4.6435 -3.9934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601939567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:09 Heat of formation + Delta-G solvation = -94.903627 kcal Electronic energy + Delta-G solvation = -26953.253686 eV Core-core repulsion = 22626.271490 eV Total energy + Delta-G solvation = -4326.982196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.54118 -47.53394 -41.29234 -39.83050 -37.56843 -37.08283 -34.15505 -32.85415 -31.08494 -30.51402 -29.98935 -27.74577 -26.35787 -25.66343 -23.49469 -22.68431 -21.89183 -20.09745 -19.54558 -19.12839 -18.14825 -18.09885 -17.57597 -16.39885 -16.18231 -15.72527 -15.02895 -14.82885 -14.73905 -14.52234 -14.31268 -14.11681 -13.97379 -13.84868 -13.70893 -13.42477 -13.28221 -13.13882 -12.90722 -12.61138 -12.29155 -12.26129 -12.21606 -11.65134 -11.47894 -11.34936 -11.04969 -10.92183 -10.68280 -10.32359 -9.71041 -9.49387 -9.28102 -9.05332 -8.89656 -8.43280 -7.54261 -6.09028 -4.11071 1.20656 1.31821 1.95121 2.37799 2.56370 3.00611 3.26824 3.32545 3.38546 3.43129 3.84005 4.06589 4.20365 4.39669 4.42137 4.56313 4.81046 4.86560 5.12174 5.22198 5.29637 5.35735 5.45372 5.60605 5.68562 5.80481 5.82244 5.94392 6.01965 6.24244 6.30001 6.33381 6.43838 6.64283 6.72859 7.11354 7.31243 7.36436 7.88813 7.95051 8.19459 8.29066 8.94064 9.54155 11.02140 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.003525 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.350678 B = 7940.613506 C = 9516.096253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.119 3.881 3 N -0.262 5.262 4 N -0.425 5.425 5 C 0.167 3.833 6 C -0.120 4.120 7 C -0.158 4.158 8 C 0.070 3.930 9 O -0.322 6.322 10 C 0.411 3.589 11 F -0.200 7.200 12 F -0.199 7.199 13 C -0.110 4.110 14 C -0.107 4.107 15 C 0.510 3.490 16 O -0.465 6.465 17 C -0.131 4.131 18 H 0.129 0.871 19 C 0.054 3.946 20 C -0.519 4.519 21 H 0.065 0.935 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.272 1.272 27 H -0.286 1.286 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.136 0.864 33 H 0.179 0.821 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.021 0.979 37 H 0.041 0.959 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 17.510 7.825 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 N -0.068 5.068 4 N -0.235 5.235 5 C 0.073 3.927 6 C -0.141 4.141 7 C -0.177 4.177 8 C 0.027 3.973 9 O -0.240 6.240 10 C 0.320 3.680 11 F -0.182 7.182 12 F -0.180 7.180 13 C -0.129 4.129 14 C -0.127 4.127 15 C 0.299 3.701 16 O -0.334 6.334 17 C -0.155 4.155 18 H 0.146 0.854 19 C 0.016 3.984 20 C -0.558 4.558 21 H 0.084 0.916 22 C -0.141 4.141 23 N -0.535 5.535 24 Si 0.725 3.275 25 H -0.206 1.206 26 H -0.197 1.197 27 H -0.212 1.212 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.177 0.823 32 H 0.154 0.846 33 H 0.195 0.805 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.039 0.961 37 H 0.060 0.940 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.422 18.238 7.663 20.512 hybrid contribution 0.925 -1.906 -0.161 2.125 sum 6.347 16.331 7.501 19.060 Atomic orbital electron populations 1.20387 0.84623 1.04849 1.03696 1.25738 0.97549 0.91711 0.92239 1.74722 0.87652 1.26616 1.17789 1.47164 1.02566 1.05836 1.67891 1.17664 0.85887 0.88507 1.00593 1.21364 0.89661 1.02518 1.00521 1.21326 1.00526 0.91161 1.04722 1.18785 0.87722 0.87785 1.03039 1.86574 1.13443 1.34886 1.89115 1.23312 0.85828 0.86897 0.71917 1.93103 1.94849 1.78087 1.52114 1.93113 1.94754 1.78144 1.52026 1.20180 0.88438 1.00287 1.03985 1.20678 0.99972 0.90131 1.01940 1.21589 0.92518 0.81098 0.74852 1.90631 1.31016 1.65452 1.46308 1.22122 0.89845 0.96498 1.07020 0.85395 1.18944 0.98865 0.93296 0.87287 1.21157 1.24434 1.04329 1.05831 0.91640 1.24951 0.95469 0.98469 0.95175 1.69948 1.38442 1.36534 1.08595 0.86504 0.80473 0.82287 0.78281 1.20612 1.19694 1.21226 0.89452 0.90038 0.88578 0.82269 0.84599 0.80452 0.84497 0.83781 0.96095 0.94043 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.49 36.01 0.38 -0.48 16 2 C 0.12 1.92 6.96 -78.58 -0.55 1.37 16 3 N -0.26 -4.52 11.20 35.75 0.40 -4.12 16 4 N -0.42 -8.23 3.73 -9.45 -0.04 -8.27 16 5 C 0.17 2.99 6.66 -83.59 -0.56 2.43 16 6 C -0.12 -2.14 9.34 -39.41 -0.37 -2.51 16 7 C -0.16 -2.44 8.25 -39.46 -0.33 -2.76 16 8 C 0.07 0.97 6.48 -39.22 -0.25 0.72 16 9 O -0.32 -3.66 10.43 -19.63 -0.20 -3.86 16 10 C 0.41 3.60 5.98 101.05 0.60 4.20 16 11 F -0.20 -2.14 15.58 2.25 0.04 -2.10 16 12 F -0.20 -2.21 15.58 2.25 0.04 -2.17 16 13 C -0.11 -1.43 9.98 -39.46 -0.39 -1.83 16 14 C -0.11 -1.58 9.61 -39.41 -0.38 -1.96 16 15 C 0.51 11.13 7.45 -10.42 -0.08 11.06 16 16 O -0.47 -11.31 14.09 5.54 0.08 -11.23 16 17 C -0.13 -2.61 2.98 -92.08 -0.27 -2.88 16 18 H 0.13 2.36 8.14 -51.93 -0.42 1.94 16 19 C 0.05 1.31 4.49 -27.89 -0.13 1.18 16 20 C -0.52 -14.35 8.39 -34.44 -0.29 -14.64 16 21 H 0.07 1.84 7.24 -52.49 -0.38 1.46 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 24 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.08 7.50 -51.93 -0.39 0.69 16 31 H 0.16 3.16 5.34 -52.49 -0.28 2.88 16 32 H 0.14 1.97 5.09 -52.48 -0.27 1.70 16 33 H 0.18 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.14 1.95 7.60 -52.49 -0.40 1.55 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.98 7.50 -51.93 -0.39 0.59 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -33.65 334.62 -5.42 -39.06 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -3.78 Total: 0.54 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.71 Total: -4.46 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 1.10 Total: -37.78 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.13 Total: -15.09 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.07 Total: -4.27 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.65 -5.42 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601939567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.839 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds