Wall clock time and date at job start Tue Mar 31 2020 14:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27926 * 126.60340 * 2 1 4 4 N 1.39146 * 113.21402 * 179.91134 * 3 2 1 5 5 C 1.40146 * 124.44238 * 180.12093 * 4 3 2 6 6 C 1.38870 * 120.01939 * 179.69659 * 5 4 3 7 7 C 1.38069 * 119.98121 * 179.74642 * 6 5 4 8 8 C 1.38728 * 120.01877 * 0.55226 * 7 6 5 9 9 O 1.35966 * 119.98426 * 179.72499 * 8 7 6 10 10 C 1.42904 * 117.00108 * 359.97438 * 9 8 7 11 11 F 1.39901 * 109.46841 * 300.00292 * 10 9 8 12 12 F 1.39898 * 109.46789 * 60.00082 * 10 9 8 13 13 C 1.38731 * 120.03471 * 359.70204 * 8 7 6 14 14 C 1.38077 * 120.01245 * 0.02562 * 13 8 7 15 15 C 1.34959 * 111.12293 * 0.09444 * 4 3 2 16 16 O 1.21297 * 127.50306 * 179.97438 * 15 4 3 17 17 C 1.51435 * 126.41782 * 180.02562 * 2 1 3 18 18 H 1.09004 * 110.60564 * 298.66953 * 17 2 1 19 19 C 1.52997 * 110.61192 * 61.48466 * 17 2 1 20 20 C 1.50694 * 109.47460 * 182.84954 * 19 17 2 21 21 H 1.08002 * 120.00179 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00472 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99350 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00608 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00340 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00090 * 24 22 20 27 27 H 1.48498 * 109.47210 * 149.99801 * 24 22 20 28 28 H 1.08995 * 109.47506 * 269.93274 * 1 2 3 29 29 H 1.08996 * 109.47503 * 29.93811 * 1 2 3 30 30 H 1.09006 * 109.46947 * 149.93465 * 1 2 3 31 31 H 1.08000 * 120.00770 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.99077 * 180.27748 * 7 6 5 33 33 H 1.08999 * 109.46878 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.99699 * 179.97438 * 13 8 7 35 35 H 1.08002 * 120.00861 * 179.97438 * 14 13 8 36 36 H 1.09005 * 109.46800 * 62.85425 * 19 17 2 37 37 H 1.08998 * 109.47382 * 302.85224 * 19 17 2 38 38 H 0.97005 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2698 1.0270 0.0000 4 7 3.6234 0.7048 0.0020 5 6 4.6621 1.6456 0.0048 6 6 5.9843 1.2208 0.0130 7 6 7.0070 2.1483 0.0105 8 6 6.7142 3.5043 0.0115 9 8 7.7219 4.4171 0.0147 10 6 9.0575 3.9090 0.0175 11 9 9.2560 3.1258 1.1597 12 9 9.2616 3.1277 -1.1249 13 6 5.3936 3.9295 0.0086 14 6 4.3698 3.0031 0.0054 15 6 3.8050 -0.6326 0.0014 16 8 4.8579 -1.2348 0.0022 17 6 2.4060 -1.2186 -0.0005 18 1 2.2399 -1.8183 0.8944 19 6 2.1756 -2.0573 -1.2592 20 6 3.0304 -3.2970 -1.2003 21 1 3.6740 -3.4693 -0.3503 22 6 2.9917 -4.2109 -2.2320 23 7 2.2083 -4.0008 -3.2673 24 14 4.0518 -5.7472 -2.1594 25 1 5.3694 -5.4695 -2.7855 26 1 4.2510 -6.1444 -0.7424 27 1 3.3777 -6.8488 -2.8923 28 1 -0.3634 -0.0012 1.0276 29 1 -0.3634 0.8905 -0.5128 30 1 -0.3633 -0.8895 -0.5149 31 1 6.2124 0.1651 0.0168 32 1 8.0353 1.8181 0.0124 33 1 9.7625 4.7403 0.0195 34 1 5.1663 4.9853 0.0098 35 1 3.3417 3.3342 0.0036 36 1 2.4436 -1.4728 -2.1394 37 1 1.1254 -2.3427 -1.3185 38 1 2.1814 -4.6435 -3.9934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601939567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:08 Heat of formation + Delta-G solvation = -116.456255 kcal Electronic energy + Delta-G solvation = -26954.188278 eV Core-core repulsion = 22626.271490 eV Total energy + Delta-G solvation = -4327.916788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.32921 -48.33771 -42.76266 -40.93062 -38.78536 -38.59886 -35.85113 -34.57196 -32.36809 -32.22106 -31.10266 -28.91299 -27.98253 -26.75771 -25.05105 -24.04358 -23.28698 -21.60934 -20.89180 -20.09405 -19.25429 -18.89489 -18.82321 -18.36796 -17.40629 -17.19071 -16.58308 -16.41278 -16.05690 -15.72410 -15.64335 -15.27172 -15.01263 -14.94989 -14.68463 -14.67189 -14.44104 -14.35309 -14.19189 -13.92817 -13.85730 -13.54353 -13.33668 -13.22541 -13.07923 -12.83589 -12.65748 -12.54189 -12.18461 -12.09991 -11.61082 -11.34176 -10.69897 -10.64165 -10.48529 -10.24257 -8.85357 -8.26112 -6.33630 -0.03703 0.11484 0.52852 1.13896 1.34907 1.37670 1.47855 1.52854 1.59343 2.37329 2.56139 2.58628 2.79457 3.09323 3.12884 3.47524 3.63816 3.67424 3.73443 3.77196 3.99890 4.17185 4.21667 4.28917 4.49512 4.59802 4.71355 4.84080 4.88962 4.93922 5.05181 5.19310 5.24309 5.29359 5.32262 5.43980 5.55647 5.71568 5.93075 6.09837 6.52075 6.70258 6.77879 7.34438 8.85036 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.003525 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.350678 B = 7940.613506 C = 9516.096253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.138 3.862 3 N -0.265 5.265 4 N -0.427 5.427 5 C 0.131 3.869 6 C -0.142 4.142 7 C -0.166 4.166 8 C 0.079 3.921 9 O -0.317 6.317 10 C 0.402 3.598 11 F -0.213 7.213 12 F -0.214 7.214 13 C -0.098 4.098 14 C -0.097 4.097 15 C 0.493 3.507 16 O -0.508 6.508 17 C -0.134 4.134 18 H 0.142 0.858 19 C 0.066 3.934 20 C -0.534 4.534 21 H 0.053 0.947 22 C 0.012 3.988 23 N -0.925 5.925 24 Si 0.953 3.047 25 H -0.286 1.286 26 H -0.266 1.266 27 H -0.272 1.272 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.243 0.757 34 H 0.177 0.823 35 H 0.161 0.839 36 H -0.015 1.015 37 H 0.048 0.952 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 19.865 8.552 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 N -0.071 5.071 4 N -0.236 5.236 5 C 0.039 3.961 6 C -0.163 4.163 7 C -0.185 4.185 8 C 0.035 3.965 9 O -0.235 6.235 10 C 0.313 3.687 11 F -0.195 7.195 12 F -0.196 7.196 13 C -0.117 4.117 14 C -0.117 4.117 15 C 0.283 3.717 16 O -0.381 6.381 17 C -0.157 4.157 18 H 0.159 0.841 19 C 0.028 3.972 20 C -0.572 4.572 21 H 0.072 0.928 22 C -0.187 4.187 23 N -0.565 5.565 24 Si 0.779 3.221 25 H -0.212 1.212 26 H -0.190 1.190 27 H -0.197 1.197 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.258 0.742 34 H 0.194 0.806 35 H 0.178 0.822 36 H 0.003 0.997 37 H 0.066 0.934 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.850 20.631 8.399 22.797 hybrid contribution 1.176 -2.520 -0.378 2.807 sum 6.026 18.111 8.022 20.704 Atomic orbital electron populations 1.20675 0.80579 1.05861 1.06220 1.26385 0.99316 0.89094 0.90567 1.74769 0.86563 1.26513 1.19236 1.47207 1.03761 1.05265 1.67335 1.17969 0.85423 0.89646 1.03086 1.21198 0.90885 1.01623 1.02568 1.21356 1.00011 0.91953 1.05169 1.18917 0.89086 0.87332 1.01126 1.86603 1.14029 1.34211 1.88626 1.24422 0.85468 0.88113 0.70699 1.93079 1.94765 1.78773 1.52849 1.93084 1.94691 1.78898 1.52957 1.20596 0.87499 1.01820 1.01787 1.20897 1.01364 0.88774 1.00624 1.21941 0.92675 0.82342 0.74781 1.90593 1.32376 1.66619 1.48492 1.22007 0.90325 0.97893 1.05485 0.84097 1.18651 0.98347 0.92248 0.87916 1.21463 1.24550 1.05700 1.05490 0.92843 1.25706 0.96663 1.01338 0.94973 1.70027 1.39663 1.37617 1.09150 0.85622 0.78554 0.79361 0.78592 1.21241 1.19017 1.19676 0.85940 0.87869 0.88564 0.85314 0.84385 0.74193 0.80556 0.82176 0.99663 0.93422 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.49 71.24 0.75 -0.71 16 2 C 0.14 4.29 6.96 46.78 0.33 4.61 16 3 N -0.26 -8.95 11.20 -40.68 -0.46 -9.41 16 4 N -0.43 -17.01 3.73 -302.09 -1.13 -18.14 16 5 C 0.13 4.81 6.66 38.11 0.25 5.06 16 6 C -0.14 -5.37 9.34 22.38 0.21 -5.16 16 7 C -0.17 -5.20 8.25 22.35 0.18 -5.01 16 8 C 0.08 2.06 6.48 22.50 0.15 2.21 16 9 O -0.32 -6.27 10.43 -93.16 -0.97 -7.25 16 10 C 0.40 6.03 5.98 113.37 0.68 6.71 16 11 F -0.21 -4.27 15.58 44.97 0.70 -3.57 16 12 F -0.21 -4.50 15.58 44.97 0.70 -3.80 16 13 C -0.10 -2.30 9.98 22.35 0.22 -2.08 16 14 C -0.10 -2.72 9.61 22.38 0.22 -2.50 16 15 C 0.49 22.64 7.45 87.94 0.65 23.30 16 16 O -0.51 -26.61 14.09 -3.08 -0.04 -26.65 16 17 C -0.13 -5.42 2.98 -11.74 -0.03 -5.46 16 18 H 0.14 5.27 8.14 -2.38 -0.02 5.25 16 19 C 0.07 3.32 4.49 29.85 0.13 3.45 16 20 C -0.53 -30.45 8.39 25.60 0.21 -30.24 16 21 H 0.05 3.12 7.24 -2.91 -0.02 3.10 16 22 C 0.01 0.68 5.46 84.66 0.46 1.15 16 23 N -0.92 -54.83 13.29 21.45 0.28 -54.55 16 24 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 28 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.93 7.50 -2.38 -0.02 1.91 16 31 H 0.13 5.65 5.34 -2.91 -0.02 5.64 16 32 H 0.14 4.14 5.09 -2.91 -0.01 4.12 16 33 H 0.24 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.16 3.94 7.60 -2.91 -0.02 3.92 16 36 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 37 H 0.05 2.29 7.50 -2.39 -0.02 2.27 16 38 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -77.57 334.62 6.65 -70.92 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.12 Total: 9.21 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 4.41 Total: -4.66 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.30 Total: -82.09 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.02 Total: -33.90 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 1.40 Total: -7.37 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.57 6.65 -70.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601939567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.536 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds